mRNA_Ecto-sp13_S_contig7894.19169.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7894.19169.1
Unique NamemRNA_Ecto-sp13_S_contig7894.19169.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7894.19169.1 vs. uniprot
Match: D7FVK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK9_ECTSI)

HSP 1 Score: 533 bits (1374), Expect = 1.520e-185
Identity = 338/388 (87.11%), Postives = 353/388 (90.98%), Query Frame = 1 
Query:    4 AQEISSKAYSGPQMASKYTFDNGDAPFSSSWTSPAPPNTNGGASTESGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPIDTRKAGAPPAWSFGDNYNDRGESPTGAAAGPPRKGNDNLRRTTGSRSHRNLGNSAPDTVTPPSATATGSSVAAASVRGHGTPGAFPRPAGAAAAPAENTAVDTERSSNTKVGGGSDIFSSAPGPFAARASKAGAVSRDRPRGGGSDGGVSSGDTKGNGRAEVAVRKLSLEVAELRTLLGINRSALARVETMSKSATAPQPTTGGRGTASNNEEQRRDTAVRKLARDVAELRAQLSTVVDKISDSSVTTPSGRGGDSEVVQTMKREMAELRSQLDNARKETALTRSALRRLQGQVDVLQKKSAGRR 1167
            AQEI+SKAY+GPQMASKYT+DNGDAPFSSSWTSP PP TNG        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPIDTR+AGAP  WS+GDN NDRGESPTGA+AGP RKGN NLR TTGS SHRNLGNSAPDTV+PPSATATGS+VAAAS RG G PGAFPR A  AAAPA+NT VDT+RSSN KVGGGSD FS APGPFAARASK GAVSRDRPRGGGSDGGVSSG+TKGN RAEVAVRKLSLEVAELRTLLGINRSALARVETMSKSA APQPTT GRG ASNNE+QRRDTAVRKLARDVAELRAQLSTVVDK+SDS+VT PSGRGGDSEVVQTMKREMAELRSQLDNARKET LTRSALRRLQG+VDVLQKK AGRR
Sbjct:  135 AQEITSKAYAGPQMASKYTYDNGDAPFSSSWTSPVPPKTNGXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPIDTRRAGAPSTWSYGDNDNDRGESPTGASAGPLRKGNGNLRSTTGSGSHRNLGNSAPDTVSPPSATATGSTVAAASFRGDGVPGAFPRAAATAAAPADNTVVDTKRSSNAKVGGGSDNFSRAPGPFAARASKGGAVSRDRPRGGGSDGGVSSGETKGNDRAEVAVRKLSLEVAELRTLLGINRSALARVETMSKSAKAPQPTTEGRGAASNNEDQRRDTAVRKLARDVAELRAQLSTVVDKVSDSAVTPPSGRGGDSEVVQTMKREMAELRSQLDNARKETTLTRSALRRLQGEVDVLQKKFAGRR 521
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BLAST of mRNA_Ecto-sp13_S_contig7894.19169.1 vs. uniprot
Match: A0A6H5KHJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ1_9PHAE)

HSP 1 Score: 528 bits (1361), Expect = 5.250e-181
Identity = 324/388 (83.51%), Postives = 339/388 (87.37%), Query Frame = 1 
Query:    4 AQEISSKAYSGPQMASKYTFDNGDAPFSSSWTSPAPPNTNGGASTESGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPIDTRKAGAPPAWSFGDNYNDRGESPTGAAAGPPRKGNDNLRRTTGSRSHRNLGNSAPDTVTPPSATATGSSVAAASVRGHGTPGAFPRPAGAAAAPAENTAVDTERSSNTKVGGGSDIFSSAPGPFAARASKAGAVSRDRPRGGGSDGGVSSGDTKGNGRAEVAVRKLSLEVAELRTLLGINRSALARVETMSKSATAPQPTTGGRGTASNNEEQRRDTAVRKLARDVAELRAQLSTVVDKISDSSVTTPSGRGGDSEVVQTMKREMAELRSQLDNARKETALTRSALRRLQGQVDVLQKKSAGRR 1167
            AQ+ISSKAY+GPQMASKYT+DNGDAPFSSSWTSP PP+TNGGASTESGK            XXXXXXXXXXXXXXXXXX+APID R+A  PP+W  GDN NDRGE+PTGAA GP RKGN NLR TTGSRSHRNLGNSAPD +TPPSATATGS+VAAASVR HGTPGA PRP  AAAAPAENTAVD++RSSNTKVGGGSDI S APGPFAARASK GAVSRDRPRGGGSDG VS GDTKGNGRAEVAVRKLSLEVAELRTLLGINRS LARVETMSKSATAPQ TT GRGTASNNE QRRDTAV+KLARDVAELRAQLSTVVDK+SDSSVT P GRGGDSEVVQTM          LDNARKETALTRSALRRLQG+VDVLQKKSAGRR
Sbjct:  314 AQDISSKAYAGPQMASKYTYDNGDAPFSSSWTSPGPPSTNGGASTESGKTAEVLPQKLSEEXXXXXXXXXXXXXXXXXXSAPIDPRRADPPPSWPSGDNDNDRGEAPTGAA-GPLRKGNGNLRSTTGSRSHRNLGNSAPDAITPPSATATGSTVAAASVRRHGTPGALPRPTAAAAAPAENTAVDSKRSSNTKVGGGSDIISPAPGPFAARASKGGAVSRDRPRGGGSDGDVSLGDTKGNGRAEVAVRKLSLEVAELRTLLGINRSTLARVETMSKSATAPQTTTEGRGTASNNEVQRRDTAVQKLARDVAELRAQLSTVVDKVSDSSVTPPRGRGGDSEVVQTMXXXXXXXXXXLDNARKETALTRSALRRLQGEVDVLQKKSAGRR 700
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7894.19169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVK9_ECTSI1.520e-18587.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHJ1_9PHAE5.250e-18183.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7894contigEcto-sp13_S_contig7894:5567..6736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1170
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003680.1
Cds size1170
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464060.297447-CDS-Ecto-sp13_S_contig7894:5566..67361681464060.297447-CDS-Ecto-sp13_S_contig7894:5566..6736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7894 5567..6736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7894.19169.1prot_Ecto-sp13_S_contig7894.19169.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7894 5567..6736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7894.19169.1

>prot_Ecto-sp13_S_contig7894.19169.1 ID=prot_Ecto-sp13_S_contig7894.19169.1|Name=mRNA_Ecto-sp13_S_contig7894.19169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=390bp
QAQEISSKAYSGPQMASKYTFDNGDAPFSSSWTSPAPPNTNGGASTESGK
AAKVLPPKRSEQQSSSSGPRSSDQRRPPPPAAPIDTRKAGAPPAWSFGDN
YNDRGESPTGAAAGPPRKGNDNLRRTTGSRSHRNLGNSAPDTVTPPSATA
TGSSVAAASVRGHGTPGAFPRPAGAAAAPAENTAVDTERSSNTKVGGGSD
IFSSAPGPFAARASKAGAVSRDRPRGGGSDGGVSSGDTKGNGRAEVAVRK
LSLEVAELRTLLGINRSALARVETMSKSATAPQPTTGGRGTASNNEEQRR
DTAVRKLARDVAELRAQLSTVVDKISDSSVTTPSGRGGDSEVVQTMKREM
AELRSQLDNARKETALTRSALRRLQGQVDVLQKKSAGRR*
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mRNA from alignment at Ecto-sp13_S_contig7894:5567..6736-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7894.19169.1 ID=mRNA_Ecto-sp13_S_contig7894.19169.1|Name=mRNA_Ecto-sp13_S_contig7894.19169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1170bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7894:5567..6736- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGCAAGAAATCTCATCAAAGGCGTACTCCGGTCCGCAAATGGCGAG
CAAGTATACCTTCGACAACGGCGACGCCCCTTTCAGTTCCTCTTGGACGT
CGCCGGCGCCCCCAAACACGAATGGCGGGGCATCCACCGAAAGTGGGAAG
GCTGCTAAAGTCTTACCCCCGAAGCGGAGTGAACAGCAGTCGTCCTCTTC
GGGCCCGCGATCTTCCGACCAAAGACGACCGCCACCTCCAGCAGCGCCGA
TCGACACCAGGAAAGCCGGAGCTCCCCCCGCCTGGTCTTTCGGCGACAAC
TACAACGATCGAGGTGAGTCACCAACGGGAGCGGCCGCGGGGCCCCCTCG
TAAAGGCAACGACAACCTTCGGAGAACCACAGGCAGCCGCAGCCACCGCA
ACCTCGGAAACTCTGCACCAGATACGGTCACGCCACCTTCGGCGACCGCG
ACGGGGTCATCGGTGGCAGCAGCGTCTGTTCGGGGTCATGGAACTCCCGG
GGCGTTTCCGCGCCCCGCAGGGGCAGCCGCTGCACCAGCAGAAAATACGG
CGGTGGACACCGAGAGATCATCCAACACTAAGGTTGGTGGAGGGAGTGAT
ATTTTTTCAAGCGCGCCCGGACCTTTCGCCGCGCGCGCCAGCAAAGCCGG
CGCGGTGTCAAGGGATCGACCCCGGGGTGGCGGCAGCGACGGCGGCGTCA
GTTCGGGCGACACGAAGGGCAACGGTCGCGCCGAAGTTGCCGTGAGAAAG
CTGTCGCTCGAGGTGGCCGAACTCCGAACCCTGCTCGGGATCAACCGTTC
GGCACTTGCGAGAGTGGAAACTATGAGCAAGTCGGCCACAGCGCCACAAC
CGACTACGGGGGGGAGGGGGACGGCTAGCAATAACGAAGAGCAACGGCGA
GATACCGCCGTGCGGAAGTTGGCTCGGGACGTGGCCGAGCTGAGGGCGCA
GCTTTCCACCGTCGTGGACAAGATTTCGGACTCTTCCGTTACGACTCCTA
GTGGGCGAGGCGGGGACAGTGAGGTAGTCCAGACCATGAAGAGGGAGATG
GCGGAGCTGCGCTCACAGCTGGACAACGCCCGCAAGGAGACTGCCCTGAC
GCGATCAGCGCTGAGGAGGCTGCAAGGCCAAGTCGACGTCTTGCAGAAGA
AGTCCGCTGGTCGACGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7894:5567..6736-

>mRNA_Ecto-sp13_S_contig7894.19169.1 ID=mRNA_Ecto-sp13_S_contig7894.19169.1|Name=mRNA_Ecto-sp13_S_contig7894.19169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1170bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7894:5567..6736- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGCAAGAAATCTCATCAAAGGCGTACTCCGGTCCGCAAATGGCGAG
CAAGTATACCTTCGACAACGGCGACGCCCCTTTCAGTTCCTCTTGGACGT
CGCCGGCGCCCCCAAACACGAATGGCGGGGCATCCACCGAAAGTGGGAAG
GCTGCTAAAGTCTTACCCCCGAAGCGGAGTGAACAGCAGTCGTCCTCTTC
GGGCCCGCGATCTTCCGACCAAAGACGACCGCCACCTCCAGCAGCGCCGA
TCGACACCAGGAAAGCCGGAGCTCCCCCCGCCTGGTCTTTCGGCGACAAC
TACAACGATCGAGGTGAGTCACCAACGGGAGCGGCCGCGGGGCCCCCTCG
TAAAGGCAACGACAACCTTCGGAGAACCACAGGCAGCCGCAGCCACCGCA
ACCTCGGAAACTCTGCACCAGATACGGTCACGCCACCTTCGGCGACCGCG
ACGGGGTCATCGGTGGCAGCAGCGTCTGTTCGGGGTCATGGAACTCCCGG
GGCGTTTCCGCGCCCCGCAGGGGCAGCCGCTGCACCAGCAGAAAATACGG
CGGTGGACACCGAGAGATCATCCAACACTAAGGTTGGTGGAGGGAGTGAT
ATTTTTTCAAGCGCGCCCGGACCTTTCGCCGCGCGCGCCAGCAAAGCCGG
CGCGGTGTCAAGGGATCGACCCCGGGGTGGCGGCAGCGACGGCGGCGTCA
GTTCGGGCGACACGAAGGGCAACGGTCGCGCCGAAGTTGCCGTGAGAAAG
CTGTCGCTCGAGGTGGCCGAACTCCGAACCCTGCTCGGGATCAACCGTTC
GGCACTTGCGAGAGTGGAAACTATGAGCAAGTCGGCCACAGCGCCACAAC
CGACTACGGGGGGGAGGGGGACGGCTAGCAATAACGAAGAGCAACGGCGA
GATACCGCCGTGCGGAAGTTGGCTCGGGACGTGGCCGAGCTGAGGGCGCA
GCTTTCCACCGTCGTGGACAAGATTTCGGACTCTTCCGTTACGACTCCTA
GTGGGCGAGGCGGGGACAGTGAGGTAGTCCAGACCATGAAGAGGGAGATG
GCGGAGCTGCGCTCACAGCTGGACAACGCCCGCAAGGAGACTGCCCTGAC
GCGATCAGCGCTGAGGAGGCTGCAAGGCCAAGTCGACGTCTTGCAGAAGA
AGTCCGCTGGTCGACGATGA
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