mRNA_Ecto-sp13_S_contig78920.19166.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78920.19166.1
Unique NamemRNA_Ecto-sp13_S_contig78920.19166.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: D7FZ03_ECTSI (CRC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ03_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 4.290e-32
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKFKTE 165
            YCQCFAGQLVCSD+C+CENCYNSAEHGVERRAAVRELLCRSPHAFDAKFKTE
Sbjct:    6 YCQCFAGQLVCSDACRCENCYNSAEHGVERRAAVRELLCRSPHAFDAKFKTE 57
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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: A0A6H5K1G5_9PHAE (CRC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G5_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.930e-31
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 MGRYCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKFKTE 165
            M RYCQCFAGQLVCSD+C+CENCYNSAEHGVERRAAVRELLCRSPHAFDAKFKTE
Sbjct:    1 MRRYCQCFAGQLVCSDACRCENCYNSAEHGVERRAAVRELLCRSPHAFDAKFKTE 55
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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: UPI001C89BA63 (spexin prohormone 2 isoform X4 n=2 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C89BA63)

HSP 1 Score: 58.5 bits (140), Expect = 1.310e-8
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKF 156
            YC+CFA    C D+CKC NCYN+AEH +ER  A++  L R+P AF  K 
Sbjct:  147 YCECFANGDAC-DNCKCLNCYNNAEHNLERSQAIKVCLDRNPGAFQRKI 194
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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: UPI001C8A733A (spexin prohormone 2 isoform X3 n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C8A733A)

HSP 1 Score: 58.5 bits (140), Expect = 1.400e-8
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKF 156
            YC+CFA    C D+CKC NCYN+AEH +ER  A++  L R+P AF  K 
Sbjct:  307 YCECFANGDAC-DNCKCLNCYNNAEHNLERSQAIKVCLDRNPGAFQRKI 354
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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: UPI001C894F53 (spexin prohormone 2 isoform X1 n=2 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C894F53)

HSP 1 Score: 58.5 bits (140), Expect = 1.410e-8
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKF 156
            YC+CFA    C D+CKC NCYN+AEH +ER  A++  L R+P AF  K 
Sbjct:  307 YCECFANGDAC-DNCKCLNCYNNAEHNLERSQAIKVCLDRNPGAFQRKI 354
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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: A0A8J1JIR6_XENTR (protein lin-54 homolog isoform X3 n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A8J1JIR6_XENTR)

HSP 1 Score: 55.8 bits (133), Expect = 4.880e-8
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKFK 159
            YC CFA   +C++ C C NCYN+AEH +ER  AV+  L R+P AF  K +
Sbjct:   83 YCDCFANGDLCNN-CNCSNCYNNAEHELERFKAVKACLYRNPDAFQPKIE 131
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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: A0A8J0T2R3_XENTR (protein lin-54 homolog isoform X1 n=2 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A8J0T2R3_XENTR)

HSP 1 Score: 55.8 bits (133), Expect = 8.620e-8
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKFK 159
            YC CFA   +C++ C C NCYN+AEH +ER  AV+  L R+P AF  K +
Sbjct:   83 YCDCFANGDLCNN-CNCSNCYNNAEHELERFKAVKACLYRNPDAFQPKIE 131
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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: A0BGH5_PARTE (CRC domain-containing protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BGH5_PARTE)

HSP 1 Score: 54.7 bits (130), Expect = 3.180e-7
Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKFK 159
            YC+CFA   VCS SC C++C N  ++  ER  A+ E L R+P AF   F+
Sbjct:  203 YCECFANNWVCSQSCNCQDCKNRIDNPQERSKAIEEALLRNPDAFAQCFQ 252
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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: A0A8C5R0Z5_9ANUR (Testis expressed metallothionein like protein n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5R0Z5_9ANUR)

HSP 1 Score: 53.5 bits (127), Expect = 8.200e-7
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKF 156
            YC CFA    CSD C C NC+N+AEH ++R  AV+  L R+P AF  K 
Sbjct:  269 YCDCFANGDFCSD-CNCNNCFNNAEHELDRFRAVKTCLDRNPEAFLPKI 316
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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: A0DF16_PARTE (CRC domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DF16_PARTE)

HSP 1 Score: 52.4 bits (124), Expect = 2.060e-6
Identity = 22/45 (48.89%), Postives = 27/45 (60.00%), Query Frame = 1 
Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAF 144
            YC+CFA   VCS SC C  C N  ++  ER  A+ E L R+P AF
Sbjct:  175 YCECFANNWVCSQSCNCTECKNRIDNPNERSKAIEEALLRNPEAF 219
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FZ03_ECTSI4.290e-3296.15CRC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K1G5_9PHAE3.930e-3194.55CRC domain-containing protein n=1 Tax=Ectocarpus s... [more]
UPI001C89BA631.310e-853.06spexin prohormone 2 isoform X4 n=2 Tax=Puntigrus t... [more]
UPI001C8A733A1.400e-853.06spexin prohormone 2 isoform X3 n=1 Tax=Puntigrus t... [more]
UPI001C894F531.410e-853.06spexin prohormone 2 isoform X1 n=2 Tax=Puntigrus t... [more]
A0A8J1JIR6_XENTR4.880e-850.00protein lin-54 homolog isoform X3 n=1 Tax=Xenopus ... [more]
A0A8J0T2R3_XENTR8.620e-850.00protein lin-54 homolog isoform X1 n=2 Tax=Xenopus ... [more]
A0BGH5_PARTE3.180e-746.00CRC domain-containing protein n=2 Tax=Paramecium t... [more]
A0A8C5R0Z5_9ANUR8.200e-751.02Testis expressed metallothionein like protein n=1 ... [more]
A0DF16_PARTE2.060e-648.89CRC domain-containing protein n=1 Tax=Paramecium t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78920contigEcto-sp13_S_contig78920:443..613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score113.6
Seed ortholog evalue3e-23
Seed eggNOG ortholog2880.D7FZ03
Model size171
KEGG koko:K21776
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0001067,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007275,GO:0008150,GO:0009653,GO:0009791,GO:0009889,GO:0009908,GO:0009934,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0022414,GO:0022603,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044212,GO:0044424,GO:0044464,GO:0048367,GO:0048437,GO:0048444,GO:0048509,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051252,GO:0051302,GO:0060255,GO:0061458,GO:0065007,GO:0080090,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0097159,GO:0099402,GO:0140110,GO:1901363,GO:1903506,GO:1905392,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.DNA-binding transcription factor activity
EggNOG OGsKOG1171@1,KOG1171@2759
Ec32 ortholog descriptionCRC domain
Ec32 orthologEc-06_002100.1
Cds size171
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464060.0862741-CDS-Ecto-sp13_S_contig78920:442..6131681464060.0862741-CDS-Ecto-sp13_S_contig78920:442..613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78920 443..613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78920.19166.1prot_Ecto-sp13_S_contig78920.19166.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78920 443..613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78920.19166.1

>prot_Ecto-sp13_S_contig78920.19166.1 ID=prot_Ecto-sp13_S_contig78920.19166.1|Name=mRNA_Ecto-sp13_S_contig78920.19166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
MGRYCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDA
KFKTEVR
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mRNA from alignment at Ecto-sp13_S_contig78920:443..613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78920.19166.1 ID=mRNA_Ecto-sp13_S_contig78920.19166.1|Name=mRNA_Ecto-sp13_S_contig78920.19166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78920:443..613+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTAGGTACTGCCAGTGCTTCGCGGGCCAGTTGGTCTGCTCCGACTC
CTGCAAGTGCGAGAACTGCTACAACTCCGCGGAGCACGGTGTGGAGCGGC
GAGCCGCCGTCCGGGAGCTTCTTTGTCGCAGCCCTCACGCCTTCGACGCC
AAGTTTAAGACGGAGGTGAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78920:443..613+

>mRNA_Ecto-sp13_S_contig78920.19166.1 ID=mRNA_Ecto-sp13_S_contig78920.19166.1|Name=mRNA_Ecto-sp13_S_contig78920.19166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78920:443..613+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTAGGTACTGCCAGTGCTTCGCGGGCCAGTTGGTCTGCTCCGACTC
CTGCAAGTGCGAGAACTGCTACAACTCCGCGGAGCACGGTGTGGAGCGGC
GAGCCGCCGTCCGGGAGCTTCTTTGTCGCAGCCCTCACGCCTTCGACGCC
AAGTTTAAGACGGAGGTGAGA
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