mRNA_Ecto-sp13_S_contig78920.19166.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig78920.19166.1
Unique Name	mRNA_Ecto-sp13_S_contig78920.19166.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: D7FZ03_ECTSI (CRC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ03_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 4.290e-32
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1

Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKFKTE 165
            YCQCFAGQLVCSD+C+CENCYNSAEHGVERRAAVRELLCRSPHAFDAKFKTE
Sbjct:    6 YCQCFAGQLVCSDACRCENCYNSAEHGVERRAAVRELLCRSPHAFDAKFKTE 57

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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: A0A6H5K1G5_9PHAE (CRC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G5_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.930e-31
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 1

Query:    1 MGRYCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKFKTE 165
            M RYCQCFAGQLVCSD+C+CENCYNSAEHGVERRAAVRELLCRSPHAFDAKFKTE
Sbjct:    1 MRRYCQCFAGQLVCSDACRCENCYNSAEHGVERRAAVRELLCRSPHAFDAKFKTE 55

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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: UPI001C89BA63 (spexin prohormone 2 isoform X4 n=2 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C89BA63)

HSP 1 Score: 58.5 bits (140), Expect = 1.310e-8
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1

Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKF 156
            YC+CFA    C D+CKC NCYN+AEH +ER  A++  L R+P AF  K 
Sbjct:  147 YCECFANGDAC-DNCKCLNCYNNAEHNLERSQAIKVCLDRNPGAFQRKI 194

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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: UPI001C8A733A (spexin prohormone 2 isoform X3 n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C8A733A)

HSP 1 Score: 58.5 bits (140), Expect = 1.400e-8
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1

Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKF 156
            YC+CFA    C D+CKC NCYN+AEH +ER  A++  L R+P AF  K 
Sbjct:  307 YCECFANGDAC-DNCKCLNCYNNAEHNLERSQAIKVCLDRNPGAFQRKI 354

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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: UPI001C894F53 (spexin prohormone 2 isoform X1 n=2 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C894F53)

HSP 1 Score: 58.5 bits (140), Expect = 1.410e-8
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1

Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKF 156
            YC+CFA    C D+CKC NCYN+AEH +ER  A++  L R+P AF  K 
Sbjct:  307 YCECFANGDAC-DNCKCLNCYNNAEHNLERSQAIKVCLDRNPGAFQRKI 354

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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: A0A8J1JIR6_XENTR (protein lin-54 homolog isoform X3 n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A8J1JIR6_XENTR)

HSP 1 Score: 55.8 bits (133), Expect = 4.880e-8
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1

Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKFK 159
            YC CFA   +C++ C C NCYN+AEH +ER  AV+  L R+P AF  K +
Sbjct:   83 YCDCFANGDLCNN-CNCSNCYNNAEHELERFKAVKACLYRNPDAFQPKIE 131

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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: A0A8J0T2R3_XENTR (protein lin-54 homolog isoform X1 n=2 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A8J0T2R3_XENTR)

HSP 1 Score: 55.8 bits (133), Expect = 8.620e-8
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1

Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKFK 159
            YC CFA   +C++ C C NCYN+AEH +ER  AV+  L R+P AF  K +
Sbjct:   83 YCDCFANGDLCNN-CNCSNCYNNAEHELERFKAVKACLYRNPDAFQPKIE 131

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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: A0BGH5_PARTE (CRC domain-containing protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BGH5_PARTE)

HSP 1 Score: 54.7 bits (130), Expect = 3.180e-7
Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 1

Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKFK 159
            YC+CFA   VCS SC C++C N  ++  ER  A+ E L R+P AF   F+
Sbjct:  203 YCECFANNWVCSQSCNCQDCKNRIDNPQERSKAIEEALLRNPDAFAQCFQ 252

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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: A0A8C5R0Z5_9ANUR (Testis expressed metallothionein like protein n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5R0Z5_9ANUR)

HSP 1 Score: 53.5 bits (127), Expect = 8.200e-7
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 1

Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDAKF 156
            YC CFA    CSD C C NC+N+AEH ++R  AV+  L R+P AF  K 
Sbjct:  269 YCDCFANGDFCSD-CNCNNCFNNAEHELDRFRAVKTCLDRNPEAFLPKI 316

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BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Match: A0DF16_PARTE (CRC domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DF16_PARTE)

HSP 1 Score: 52.4 bits (124), Expect = 2.060e-6
Identity = 22/45 (48.89%), Postives = 27/45 (60.00%), Query Frame = 1

Query:   10 YCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAF 144
            YC+CFA   VCS SC C  C N  ++  ER  A+ E L R+P AF
Sbjct:  175 YCECFANNWVCSQSCNCTECKNRIDNPNERSKAIEEALLRNPEAF 219

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig78920.19166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
D7FZ03_ECTSI	4.290e-32	96.15	CRC domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5K1G5_9PHAE	3.930e-31	94.55	CRC domain-containing protein n=1 Tax=Ectocarpus s...	[more]
UPI001C89BA63	1.310e-8	53.06	spexin prohormone 2 isoform X4 n=2 Tax=Puntigrus t...	[more]
UPI001C8A733A	1.400e-8	53.06	spexin prohormone 2 isoform X3 n=1 Tax=Puntigrus t...	[more]
UPI001C894F53	1.410e-8	53.06	spexin prohormone 2 isoform X1 n=2 Tax=Puntigrus t...	[more]
A0A8J1JIR6_XENTR	4.880e-8	50.00	protein lin-54 homolog isoform X3 n=1 Tax=Xenopus ...	[more]
A0A8J0T2R3_XENTR	8.620e-8	50.00	protein lin-54 homolog isoform X1 n=2 Tax=Xenopus ...	[more]
A0BGH5_PARTE	3.180e-7	46.00	CRC domain-containing protein n=2 Tax=Paramecium t...	[more]
A0A8C5R0Z5_9ANUR	8.200e-7	51.02	Testis expressed metallothionein like protein n=1 ...	[more]
A0DF16_PARTE	2.060e-6	48.89	CRC domain-containing protein n=1 Tax=Paramecium t...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig78920	contig	Ecto-sp13_S_contig78920:443..613 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	113.6
Seed ortholog evalue	3e-23
Seed eggNOG ortholog	2880.D7FZ03
Model size	171
KEGG ko	ko:K21776
KEGG Pathway	ko04218,map04218
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0000003,GO:0001067,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007275,GO:0008150,GO:0009653,GO:0009791,GO:0009889,GO:0009908,GO:0009934,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0022414,GO:0022603,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044212,GO:0044424,GO:0044464,GO:0048367,GO:0048437,GO:0048444,GO:0048509,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051252,GO:0051302,GO:0060255,GO:0061458,GO:0065007,GO:0080090,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0097159,GO:0099402,GO:0140110,GO:1901363,GO:1903506,GO:1905392,GO:2000112,GO:2001141
Exons	1
EggNOG free text desc.	DNA-binding transcription factor activity
EggNOG OGs	KOG1171@1,KOG1171@2759
Ec32 ortholog description	CRC domain
Ec32 ortholog	Ec-06_002100.1
Cds size	171
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464060.0862741-CDS-Ecto-sp13_S_contig78920:442..613	1681464060.0862741-CDS-Ecto-sp13_S_contig78920:442..613	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig78920 443..613 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig78920.19166.1	prot_Ecto-sp13_S_contig78920.19166.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig78920 443..613 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig78920:443..613+
coding sequence from alignment at Ecto-sp13_S_contig78920:443..613+

protein sequence of mRNA_Ecto-sp13_S_contig78920.19166.1

>prot_Ecto-sp13_S_contig78920.19166.1 ID=prot_Ecto-sp13_S_contig78920.19166.1|Name=mRNA_Ecto-sp13_S_contig78920.19166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
MGRYCQCFAGQLVCSDSCKCENCYNSAEHGVERRAAVRELLCRSPHAFDA
KFKTEVR

mRNA from alignment at Ecto-sp13_S_contig78920:443..613+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig78920.19166.1 ID=mRNA_Ecto-sp13_S_contig78920.19166.1|Name=mRNA_Ecto-sp13_S_contig78920.19166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78920:443..613+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTAGGTACTGCCAGTGCTTCGCGGGCCAGTTGGTCTGCTCCGACTC
CTGCAAGTGCGAGAACTGCTACAACTCCGCGGAGCACGGTGTGGAGCGGC
GAGCCGCCGTCCGGGAGCTTCTTTGTCGCAGCCCTCACGCCTTCGACGCC
AAGTTTAAGACGGAGGTGAGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78920:443..613+

>mRNA_Ecto-sp13_S_contig78920.19166.1 ID=mRNA_Ecto-sp13_S_contig78920.19166.1|Name=mRNA_Ecto-sp13_S_contig78920.19166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78920:443..613+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTAGGTACTGCCAGTGCTTCGCGGGCCAGTTGGTCTGCTCCGACTC
CTGCAAGTGCGAGAACTGCTACAACTCCGCGGAGCACGGTGTGGAGCGGC
GAGCCGCCGTCCGGGAGCTTCTTTGTCGCAGCCCTCACGCCTTCGACGCC
AAGTTTAAGACGGAGGTGAGA