mRNA_Ecto-sp13_S_contig789.19165.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig789.19165.1
Unique NamemRNA_Ecto-sp13_S_contig789.19165.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig789.19165.1 vs. uniprot
Match: D7G647_ECTSI (RTW, Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G647_ECTSI)

HSP 1 Score: 405 bits (1040), Expect = 7.240e-138
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 1 
Query:  349 MSERKTEGKDHMEDGDEDLEDPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNAKLDDGVEVKVDFWDTAGQERFSSMHPSYYYRAHACIMVFDVTRKATYKNLLDWYGELRQYSESIPCLLIANKIDVDYQVTKKSFKFAQQHDLPFFFVSAADGTNVVKAFDEAVKAGMEFKKNGGDFVDEALSLLEGK 954
            MSERKTEGKDHMEDGDEDLEDPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNAKLDDGVEVKVDFWDTAGQERFSSMHPSYYYRAHACIMVFDVTRKATYKNL DWYGELRQYSESIPCLLIANKIDVDYQVTKKSFKFAQQHDLPFFFVSAADGTNVVKAFDEAVKAGMEFKKNGGDFVDEALSLLEGK
Sbjct:    1 MSERKTEGKDHMEDGDEDLEDPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNAKLDDGVEVKVDFWDTAGQERFSSMHPSYYYRAHACIMVFDVTRKATYKNLSDWYGELRQYSESIPCLLIANKIDVDYQVTKKSFKFAQQHDLPFFFVSAADGTNVVKAFDEAVKAGMEFKKNGGDFVDEALSLLEGK 202
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BLAST of mRNA_Ecto-sp13_S_contig789.19165.1 vs. uniprot
Match: A0A835ZG89_9STRA (RTW, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG89_9STRA)

HSP 1 Score: 312 bits (800), Expect = 1.180e-101
Identity = 148/184 (80.43%), Postives = 168/184 (91.30%), Query Frame = 1 
Query:  397 EDLEDPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNAKLDDGVEVKVDFWDTAGQERFSSMHPSYYYRAHACIMVFDVTRKATYKNLLDWYGELRQYSESIPCLLIANKIDVDYQVTKKSFKFAQQHDLPFFFVSAADGTNVVKAFDEAVKAGMEFKKNGGDFVDEALSLLE 948
            +DL DPDLKVILLGDSAVGKSKLVERYLMDEY+PRQLSTFALTLFRKNA L+DG    VDFWDTAGQERF+SMHPSYYYRAHACIMVFDVTRKATYKNL+ WYGELRQ+ ESIPC+L+ANKIDVDY VTKK FKFA QH+LPFFFVSAADG NVV+ F+EA++  +E K++GGDFV++AL+LL+
Sbjct:   13 DDLGDPDLKVILLGDSAVGKSKLVERYLMDEYSPRQLSTFALTLFRKNAVLEDGTRTTVDFWDTAGQERFTSMHPSYYYRAHACIMVFDVTRKATYKNLVQWYGELRQFCESIPCILVANKIDVDYNVTKKCFKFATQHNLPFFFVSAADGANVVQVFEEAIRLAIEHKRSGGDFVEDALTLLD 196
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BLAST of mRNA_Ecto-sp13_S_contig789.19165.1 vs. uniprot
Match: A0A125SEA6_9STRA (RABL2 n=1 Tax=Trachydiscus minutus TaxID=1032745 RepID=A0A125SEA6_9STRA)

HSP 1 Score: 291 bits (746), Expect = 2.490e-93
Identity = 145/205 (70.73%), Postives = 167/205 (81.46%), Query Frame = 1 
Query:  349 MSERKTEGKDHMEDGDE-----DLEDPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNAKLDDGVEVKVDFWDTAGQERFSSMHPSYYYRAHACIMVFDVTRKATYKNLLDWYGELRQYSESIPCLLIANKIDVDYQVTKKSFKFAQQHDLPFFFVSAADGTNVVKAFDEAVKAGMEFKKNGGDFVDEALSLLE 948
            +SE K EGK   E GD      DL DPD K+ILLGDSAVGKSKLVERYLMDEYNPRQLST+ALTL+RK   L++G    +D WDTAGQERF+S+HPSYYY AH CI+VFDVTRK TY++L DWYGELRQY ESIPC+L+ANKIDVDY+VTKKSFKFA Q++LPFFFVSAADGTNVVK F EAV+ G+ FKKN  DF+ E +  L+
Sbjct:    7 LSEGKDEGKTANE-GDNNNNGVDLGDPDCKIILLGDSAVGKSKLVERYLMDEYNPRQLSTYALTLYRKTVVLEEGNTYDIDLWDTAGQERFNSLHPSYYYGAHCCILVFDVTRKVTYQHLSDWYGELRQYCESIPCILVANKIDVDYKVTKKSFKFASQYELPFFFVSAADGTNVVKVFHEAVRLGINFKKNNPDFMTEVIEFLK 210
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BLAST of mRNA_Ecto-sp13_S_contig789.19165.1 vs. uniprot
Match: A0A7S2XUJ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUJ5_9STRA)

HSP 1 Score: 278 bits (711), Expect = 5.200e-88
Identity = 141/217 (64.98%), Postives = 167/217 (76.96%), Query Frame = 1 
Query:  349 MSERKTEGKDHMEDGDEDLEDPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNAKL---------DDGVE------VKVDFWDTAGQERFSSMHPSYYYRAHACIMVFDVTRKATYKNLLDWYGELRQYSESIPCLLIANKIDVDYQVTKKSFKFAQQHDLPFFFVSAADGTNVVKAFDEAVKAGMEFKKNGGDFVDEALSLLEGK 954
            M+E K EG+D       DL DPD KVILLGDSAVGKSKLVERYLM+++NPRQLSTFALTL+RK  +L         DDG +      V +D WDTAGQERF+SMHPSYYYRAHACI+VFDVTRK TY+NL  WY ELR Y E+IP +L ANKID++Y+VTKKSFKFA QH LPFFF SAADGTNVV+ F+ AVK G+ +K+  GDF+++ALS+L  K
Sbjct:    1 MAEEKLEGQD-------DLPDPDCKVILLGDSAVGKSKLVERYLMNDFNPRQLSTFALTLYRKEVQLPEDDGDGGKDDGAKGQGGRTVSIDIWDTAGQERFTSMHPSYYYRAHACILVFDVTRKVTYQNLSTWYSELRNYCENIPVILCANKIDINYEVTKKSFKFASQHQLPFFFASAADGTNVVQIFESAVKMGVHYKETEGDFIEDALSVLGDK 210
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BLAST of mRNA_Ecto-sp13_S_contig789.19165.1 vs. uniprot
Match: A0A8K1CGD5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGD5_PYTOL)

HSP 1 Score: 272 bits (696), Expect = 5.960e-86
Identity = 135/194 (69.59%), Postives = 157/194 (80.93%), Query Frame = 1 
Query:  376 DHMEDGDEDLEDPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNAKLDD----GVEVKVDFWDTAGQERFSSMHPSYYYRAHACIMVFDVTRKATYKNLLDWYGELRQYSESIPCLLIANKIDVDYQVTKKSFKFAQQHDLPFFFVSAADGTNVVKAFDEAVKAGMEFKKNGGDFVDEALSLL 945
            D  E  D+DL +PD+KVILLGDSAVGKSKLVER++M+E+ PRQLSTFALTLFRK  ++ D       +KVDFWDTAGQERFSSMHPSYYY A ACIMVFDVTRK TY+NL  WY ELR+Y E+IPC L+ANKIDVD  VT K FKF++ H+LPF FVSAADGTNVVK F +AVKA  +FKK+GGDF+ + L LL
Sbjct:    3 DAKEKPDDDLGEPDVKVILLGDSAVGKSKLVERFMMNEFQPRQLSTFALTLFRKEVEIPDEKGKSQVIKVDFWDTAGQERFSSMHPSYYYGATACIMVFDVTRKVTYQNLTGWYKELREYCENIPCFLVANKIDVDLNVTSKKFKFSETHNLPFEFVSAADGTNVVKVFQDAVKAAYQFKKDGGDFMADVLDLL 196
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BLAST of mRNA_Ecto-sp13_S_contig789.19165.1 vs. uniprot
Match: A0A6G0WRD6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WRD6_9STRA)

HSP 1 Score: 273 bits (697), Expect = 1.290e-85
Identity = 128/187 (68.45%), Postives = 156/187 (83.42%), Query Frame = 1 
Query:  388 DGDEDLEDPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNAKLDDGVEVKVDFWDTAGQERFSSMHPSYYYRAHACIMVFDVTRKATYKNLLDWYGELRQYSESIPCLLIANKIDVDYQVTKKSFKFAQQHDLPFFFVSAADGTNVVKAFDEAVKAGMEFKKNGGDFVDEALSLLE 948
            +GD+ L DPD+K+ILLGDSAVGKSKLVERY+M+EY PRQLSTFALTLFRK+ +L+DG   K+DFWDTAGQERF+SMH SYY+ A ACI+VFDVTRK TY++L DWY ELR+Y ESIPC L ANK+DVD +VT K FKFA+ H+L F FVSAADGTNVVK F++ + A ++ KK GGDF+ + L LL+
Sbjct:    9 EGDDGLGDPDVKIILLGDSAVGKSKLVERYMMNEYQPRQLSTFALTLFRKDFQLEDGTTAKIDFWDTAGQERFNSMHASYYFGASACILVFDVTRKTTYQHLADWYKELREYCESIPCFLAANKVDVDLEVTNKKFKFAETHNLSFSFVSAADGTNVVKLFEDTIHAALKHKKEGGDFMSDVLDLLD 195
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BLAST of mRNA_Ecto-sp13_S_contig789.19165.1 vs. uniprot
Match: A0A024TW89_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TW89_9STRA)

HSP 1 Score: 271 bits (694), Expect = 1.320e-85
Identity = 128/186 (68.82%), Postives = 155/186 (83.33%), Query Frame = 1 
Query:  388 DGDEDLEDPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNAKLDDGVEVKVDFWDTAGQERFSSMHPSYYYRAHACIMVFDVTRKATYKNLLDWYGELRQYSESIPCLLIANKIDVDYQVTKKSFKFAQQHDLPFFFVSAADGTNVVKAFDEAVKAGMEFKKNGGDFVDEALSLL 945
            +GD+ L DPD+K+ILLGDSAVGKSKLVERY+M+EY PRQLSTFALTLFRK+  + DG  VK+DFWDTAGQERF+SMH SYY+ A ACI+VFDVTRK TY++L DWY ELR+Y E++PC L ANK+DVD +VT K FKFA+ H+L F FVSAADGTNVVK F+EA++A ++FK  GGDFV + L  L
Sbjct:    8 EGDDGLGDPDVKIILLGDSAVGKSKLVERYMMNEYQPRQLSTFALTLFRKDFTMPDGKTVKIDFWDTAGQERFNSMHSSYYFGAAACILVFDVTRKTTYQHLADWYKELREYCETVPCFLAANKVDVDVEVTNKKFKFAETHNLGFSFVSAADGTNVVKLFEEAIQAALKFKSEGGDFVSDVLDFL 193
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BLAST of mRNA_Ecto-sp13_S_contig789.19165.1 vs. uniprot
Match: T0R548_SAPDV (Rab family, other n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0R548_SAPDV)

HSP 1 Score: 271 bits (693), Expect = 1.680e-85
Identity = 133/193 (68.91%), Postives = 156/193 (80.83%), Query Frame = 1 
Query:  367 EGKDHMEDGDEDLEDPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNAKLDDGVEVKVDFWDTAGQERFSSMHPSYYYRAHACIMVFDVTRKATYKNLLDWYGELRQYSESIPCLLIANKIDVDYQVTKKSFKFAQQHDLPFFFVSAADGTNVVKAFDEAVKAGMEFKKNGGDFVDEALSLL 945
            E K   EDG   L D DLK+ILLGDSAVGKSKLVER++M+EY PRQLSTFALTLFRK   +DDG   K+D WDTAGQERFSSMHPSYY+ A ACI+VFDVTRK TY++L DWY ELR+Y E++PC L ANKIDVD +VT K FKFA+ H+L F FVSAADGTNVVK F+EA+ AG+++KK GGDF+ + L LL
Sbjct:    6 ESKALQEDG---LGDADLKIILLGDSAVGKSKLVERFMMNEYQPRQLSTFALTLFRKEFPMDDGSTAKIDIWDTAGQERFSSMHPSYYFGASACILVFDVTRKTTYQHLADWYKELREYCENVPCFLAANKIDVDLEVTNKKFKFAETHNLGFHFVSAADGTNVVKIFEEAIHAGLKYKKEGGDFMADVLDLL 195
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BLAST of mRNA_Ecto-sp13_S_contig789.19165.1 vs. uniprot
Match: A0A5D6XLH8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLH8_9STRA)

HSP 1 Score: 270 bits (690), Expect = 5.250e-85
Identity = 135/186 (72.58%), Postives = 156/186 (83.87%), Query Frame = 1 
Query:  400 DLEDPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNAKL--DDGVE--VKVDFWDTAGQERFSSMHPSYYYRAHACIMVFDVTRKATYKNLLDWYGELRQYSESIPCLLIANKIDVDYQVTKKSFKFAQQHDLPFFFVSAADGTNVVKAFDEAVKAGMEFKKNGGDFVDEALSLL 945
            DL +PD+K+ILLGDSAVGKSKLVER++M+E+ PRQLSTFALTLFRK  +L  DDG +  VKVDFWDTAGQERFSSMHPSYYY A ACIMVFDVTRK TY+NL +WY ELR+Y E+IPC L+ANKIDVD  VT K FKFA+ H+L F FVSAADGTNVVK F +AVKA ++FKK GGDF+ + L LL
Sbjct:   15 DLGEPDVKIILLGDSAVGKSKLVERFMMNEFQPRQLSTFALTLFRKEVELENDDGKKALVKVDFWDTAGQERFSSMHPSYYYGATACIMVFDVTRKVTYQNLANWYQELREYCENIPCFLVANKIDVDLAVTSKKFKFAETHNLEFEFVSAADGTNVVKVFRDAVKAALKFKKEGGDFMADVLDLL 200
[Close]
BLAST of mRNA_Ecto-sp13_S_contig789.19165.1 vs. uniprot
Match: A0A2D4BD48_PYTIN (Rab family, other n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BD48_PYTIN)

HSP 1 Score: 269 bits (687), Expect = 1.380e-84
Identity = 134/188 (71.28%), Postives = 154/188 (81.91%), Query Frame = 1 
Query:  394 DEDLEDPDLKVILLGDSAVGKSKLVERYLMDEYNPRQLSTFALTLFRKNAKLDDGVE----VKVDFWDTAGQERFSSMHPSYYYRAHACIMVFDVTRKATYKNLLDWYGELRQYSESIPCLLIANKIDVDYQVTKKSFKFAQQHDLPFFFVSAADGTNVVKAFDEAVKAGMEFKKNGGDFVDEALSLL 945
            D+DL +PD+KVILLGDSAVGKSKLVER++MDE+ PRQLSTFALTLFRK  +L+D       VKVDFWDTAGQERFSSMHPSYYY AHACI+VFDVTRK TY+NL +WY ELR+Y E+IPC L+ANKIDVD  VT K FKFA+ H+L F FVSAADGTNVVK F +AV A  +FK +GGDF+   L LL
Sbjct:   11 DDDLGEPDVKVILLGDSAVGKSKLVERFMMDEFQPRQLSTFALTLFRKEVELEDERGKPQIVKVDFWDTAGQERFSSMHPSYYYGAHACILVFDVTRKTTYQNLANWYKELREYCENIPCFLVANKIDVDLAVTNKKFKFAETHNLEFEFVSAADGTNVVKLFKQAVAAACKFKADGGDFMATVLDLL 198
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig789.19165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G647_ECTSI7.240e-13899.50RTW, Ras superfamily GTPase n=2 Tax=Ectocarpus Tax... [more]
A0A835ZG89_9STRA1.180e-10180.43RTW, ras superfamily GTPase n=1 Tax=Tribonema minu... [more]
A0A125SEA6_9STRA2.490e-9370.73RABL2 n=1 Tax=Trachydiscus minutus TaxID=1032745 R... [more]
A0A7S2XUJ5_9STRA5.200e-8864.98Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8K1CGD5_PYTOL5.960e-8669.59Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0WRD6_9STRA1.290e-8568.45Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024TW89_9STRA1.320e-8568.82Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
T0R548_SAPDV1.680e-8568.91Rab family, other n=2 Tax=Saprolegniaceae TaxID=47... [more]
A0A5D6XLH8_9STRA5.250e-8572.58Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4BD48_PYTIN1.380e-8471.28Rab family, other n=1 Tax=Pythium insidiosum TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig789contigEcto-sp13_S_contig789:14375..17030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score407.1
Seed ortholog evalue4.7e-111
Seed eggNOG ortholog2880.D7G647
Preferred nameRABL2B
Model size1531
KEGG koko:K07883,ko:K07931,ko:K07976,ko:K17977
Hectar predicted targeting categoryother localisation
GOsGO:0000001,GO:0000003,GO:0000131,GO:0000166,GO:0000242,GO:0000902,GO:0000904,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0005929,GO:0005933,GO:0005934,GO:0005935,GO:0006810,GO:0006928,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007029,GO:0007030,GO:0007275,GO:0007338,GO:0007399,GO:0008150,GO:0008594,GO:0009566,GO:0009653,GO:0009987,GO:0010256,GO:0010970,GO:0012505,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019953,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030317,GO:0030427,GO:0030705,GO:0030990,GO:0030992,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032989,GO:0032991,GO:0035639,GO:0036064,GO:0036094,GO:0036126,GO:0040011,GO:0042073,GO:0042461,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0046530,GO:0046907,GO:0048308,GO:0048309,GO:0048311,GO:0048313,GO:0048468,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051649,GO:0051674,GO:0051704,GO:0060271,GO:0070925,GO:0071840,GO:0097159,GO:0097223,GO:0097225,GO:0097367,GO:0097722,GO:0097729,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901265,GO:1901363
Exons4
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0087@2759
Ec32 ortholog descriptionRTW, Ras superfamily GTPase
Ec32 orthologEc-11_005150.1
Cds size609
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04031,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig789.19165.1prot_Ecto-sp13_S_contig789.19165.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig789 14723..16456 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464059.9800014-UTR-Ecto-sp13_S_contig789:14374..147221681464059.9800014-UTR-Ecto-sp13_S_contig789:14374..14722Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig789 14375..14722 +
1681464060.0454123-UTR-Ecto-sp13_S_contig789:16456..170301681464060.0454123-UTR-Ecto-sp13_S_contig789:16456..17030Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig789 16457..17030 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464059.993666-CDS-Ecto-sp13_S_contig789:14722..147971681464059.993666-CDS-Ecto-sp13_S_contig789:14722..14797Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig789 14723..14797 +
1681464060.0051403-CDS-Ecto-sp13_S_contig789:15117..152681681464060.0051403-CDS-Ecto-sp13_S_contig789:15117..15268Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig789 15118..15268 +
1681464060.0161617-CDS-Ecto-sp13_S_contig789:15688..158911681464060.0161617-CDS-Ecto-sp13_S_contig789:15688..15891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig789 15689..15891 +
1681464060.0266192-CDS-Ecto-sp13_S_contig789:16276..164561681464060.0266192-CDS-Ecto-sp13_S_contig789:16276..16456Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig789 16277..16456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig789.19165.1

>prot_Ecto-sp13_S_contig789.19165.1 ID=prot_Ecto-sp13_S_contig789.19165.1|Name=mRNA_Ecto-sp13_S_contig789.19165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=203bp
MSERKTEGKDHMEDGDEDLEDPDLKVILLGDSAVGKSKLVERYLMDEYNP
RQLSTFALTLFRKNAKLDDGVEVKVDFWDTAGQERFSSMHPSYYYRAHAC
IMVFDVTRKATYKNLLDWYGELRQYSESIPCLLIANKIDVDYQVTKKSFK
FAQQHDLPFFFVSAADGTNVVKAFDEAVKAGMEFKKNGGDFVDEALSLLE
GK*
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mRNA from alignment at Ecto-sp13_S_contig789:14375..17030+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig789.19165.1 ID=mRNA_Ecto-sp13_S_contig789.19165.1|Name=mRNA_Ecto-sp13_S_contig789.19165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2656bp|location=Sequence derived from alignment at Ecto-sp13_S_contig789:14375..17030+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCAATGTTGCAGTGCTTTAGACACAGACACAAGCCAGCAACCCCGAGC
CGGGAGGGGGGTGGTTACATCCACGAGACCCCCCGATTTGCGGCGTGATC
TCGTGATCTCGTCTACGTCAGACGTGCGACTGCTATCAGAAGTACATCCC
ATCGTGATCTCGTGCAACCTCGAGCCACCTACCCCGCAAGCTTTTCGACA
TCGCTATTGCAAGAAAACCTTTTACGTGTAGTGCACGATCCCTCTTGCTA
CCGGAGGCGAAAACCCAGCGCACAAACCCGTCGAGCGGGGCACCCAATTT
GAACGATATCTTCGGTGAAAAAAGGCGTACGGGGGCGGATCCAAAGCAAT
GTCTGAACGAAAAACGGAGGGTAAGGACCACATGGAGGATGGTGATGAGG
ACCTAGAGGACCCGGATCTGAAGGTGCGGAGGGAGGGGTTTCTCTCGGCT
GTTGCTATCGATGTCATGGCCGCTGGCCGTTGATGGCGCATCTGTAGTCT
TCGTGGTCGTTGGTATACTGCCGCCTGGTTGGTCCGTTCACTGCAAAGCG
TACATCGAGCGCGTGGCAAAAGGTTCTCTCAGGCCCGGTATCTACTCCTG
AATCTACTGCTTCCTGAAGGCCGATGATGTGACATGTTATAACGTAGCAG
CACTTCTGCAGGACGCCCTGGAACTTCCAGACTGAATCGTAGGCAAACGA
TGATGTTATTTTGTTCCTGTGTGTCGTGTGGTGTGTACACAAGGTTATCC
TCCTGGGAGACTCTGCCGTGGGGAAGTCAAAGCTGGTGGAGCGGTATCTC
ATGGACGAATACAACCCCCGGCAGCTGTCTACATTCGCGCTGACGTTATT
CCGGAAGAATGCTAAGCTGGATGACGGCGTCGAGGTCAAAGTTGGTGAAG
AGGACAAAGAATTTGTTGGCCGACTGTGCTGTACTACAGTAGCTGGACAG
GAGCAGTGTAGTCTACACTACTGTACCTTTTTACAGCAGTGCTCTCTTCC
GTGATGATTTTTTTGGTAGTGTAGTGGTAGACGGCTGTGGCGATCAGAGT
ACGCAAACAATGCTCCACCACTCGTCTCTCGGATATGCCCCCTCCTCACG
GATACGTTTTCTGTGTACCTTGGACAACGGGGTAACCAGGAAAACCGTGT
GCGTCTGTCAAACGTGCAAAAAGCTGAGCCACGCCCTGAGTTCGTCCTAG
GGCAGTTTACGAACGCTTGCATGAAGCAACCTAAAAACACGCAGATCTAA
TCGCACCGGGTCTGTTTTTTGCCGGCCTGTTTATTTTGGCGCGGCGGGCG
GTGGGCGGGCGCAGATTTCTGGGACACAGCGGGACAGGAACGGTTCAGCA
GCATGCACCCTTCGTACTACTACCGGGCGCATGCTTGCATCATGGTTTTC
GACGTGACTCGAAAGGCGACGTACAAGAACCTTTTGGACTGGTACGGGGA
ACTACGGCAGTATTCGGAGAGCATCCCTTGCCTGCTCATCGCCAACAAGA
TAGATGTTGACTACCAGGTGGGGCCAATGGAGGAGTGTATCGGCTCGAAC
CGTGTCGCTAATGCTCCTTCGTAATTACACAAAATTCTCAACACATGATG
ATTGCACGCCGCGCCAACAGAATTAGCGCCTCAACATTACGAGGTGGTTT
TGCGGAAACCGAGGATCTCACCTGACTAGCGTAAATTCGTACCTACGTGA
CGAGCACGCGTATCACGATAATACTTGTACAGTACTTCGAAGTATTCGAC
GAAATCCCCGGTGGTAGTCTTCAAAACATCGTCGTCACGGCCACCTGCTC
CCAACAATGTTTAACCTGCGCCATTCATTAAGGCTGGCATAACCGTGAAC
ATAACGCCCCTGCTCGACCCACGCCGCCAACGTAAACGCACCCTAAGCAC
AGGTGACGAAGAAGAGCTTCAAGTTCGCCCAGCAGCATGATCTCCCTTTT
TTCTTCGTCTCCGCGGCCGACGGGACGAATGTGGTGAAGGCGTTCGACGA
GGCCGTCAAGGCCGGCATGGAGTTCAAGAAGAACGGAGGCGACTTCGTGG
ACGAGGCCCTGTCCCTATTAGAGGGAAAATGAACTGCTGCTGTGGAATAG
AGGGTCGAGTGTAGCGAGCTTGGTGGTTCTCGACTTGTTGTTTGAGAGTT
CCATGTCGGTCCCCCTTCCTACTGTATTCGGTAGGCAGTAAATAACACTG
TAGGTCTTGCGTGTGAACTGAACGAGGAAAGCGCAGAAAGCAATGGCTGA
GGCATGGCCCACACTCAAGCTGGTTGCATGCCCAGCGTTTTTACCGAGGA
ATGTATTTGTGTATGTGTGTATTAGGCGGAAAGCAACATGTTGAGCTTGT
TCGACTTAGCTGACAGGTACTGTTTCTCTTTGACGCACACAGCAGTACTC
TTGGTGCAAAATATTGTGTTCGAAAGTGTGAAATCAATCATGAACGCGGA
ATATTCCTGCGCGCACCTGTTGAGGGTCAACAGGAAGTCATTCTACCGTA
GAGAGAGATAAGCTAACTTGATTGCAACAGAGGCCATGTGGCTGTTTAAT
GCCCCCCCTAACATGTGATACAGATTACGTTGGAATCACCACTTAGAGCC
CTCAACGCACGACGATTTTCGTTCACTCTGTGTGGAGTAACACTGATAAA
TAGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig789:14375..17030+

>mRNA_Ecto-sp13_S_contig789.19165.1 ID=mRNA_Ecto-sp13_S_contig789.19165.1|Name=mRNA_Ecto-sp13_S_contig789.19165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig789:14375..17030+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGAACGAAAAACGGAGGGTAAGGACCACATGGAGGATGGTGATGA
GGACCTAGAGGACCCGGATCTGAAGGTTATCCTCCTGGGAGACTCTGCCG
TGGGGAAGTCAAAGCTGGTGGAGCGGTATCTCATGGACGAATACAACCCC
CGGCAGCTGTCTACATTCGCGCTGACGTTATTCCGGAAGAATGCTAAGCT
GGATGACGGCGTCGAGGTCAAAGTTGATTTCTGGGACACAGCGGGACAGG
AACGGTTCAGCAGCATGCACCCTTCGTACTACTACCGGGCGCATGCTTGC
ATCATGGTTTTCGACGTGACTCGAAAGGCGACGTACAAGAACCTTTTGGA
CTGGTACGGGGAACTACGGCAGTATTCGGAGAGCATCCCTTGCCTGCTCA
TCGCCAACAAGATAGATGTTGACTACCAGGTGACGAAGAAGAGCTTCAAG
TTCGCCCAGCAGCATGATCTCCCTTTTTTCTTCGTCTCCGCGGCCGACGG
GACGAATGTGGTGAAGGCGTTCGACGAGGCCGTCAAGGCCGGCATGGAGT
TCAAGAAGAACGGAGGCGACTTCGTGGACGAGGCCCTGTCCCTATTAGAG
GGAAAATGA
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