mRNA_Ecto-sp13_S_contig78881.19163.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78881.19163.1
Unique NamemRNA_Ecto-sp13_S_contig78881.19163.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78881.19163.1 vs. uniprot
Match: D7FSI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSI4_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 3.600e-60
Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 1 
Query:    1 VLERGPQDDKEAHALAECVFAVATVAKGHIEAAEESLAAARDETGGKLPAGAFAALLPGVRVAWYLETLQACGFNAFDESLRPQSPFKFQLRLGRAMITEKF 306
            VLERGPQDDKEAHALAECVFAVA+VAKGHIEAAEE LAAAR+ETGGKLPAGAFAALLPGVRVAWYLETLQACGFNAFDESLRPQSPFKFQLRLGRA+ITEKF
Sbjct:  222 VLERGPQDDKEAHALAECVFAVASVAKGHIEAAEEGLAAAREETGGKLPAGAFAALLPGVRVAWYLETLQACGFNAFDESLRPQSPFKFQLRLGRAVITEKF 323
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78881.19163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSI4_ECTSI3.600e-6096.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78881contigEcto-sp13_S_contig78881:23..331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score196.4
Seed ortholog evalue6.4e-48
Seed eggNOG ortholog2880.D7FSI4
Model size309
KEGG koko:K18163
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.mitochondrial respiratory chain complex I assembly
EggNOG OGsCOG1562@1,KOG4411@2759
Cds size309
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464059.6412106-CDS-Ecto-sp13_S_contig78881:22..3311681464059.6412106-CDS-Ecto-sp13_S_contig78881:22..331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78881 23..331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78881.19163.1prot_Ecto-sp13_S_contig78881.19163.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78881 23..331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78881.19163.1

>prot_Ecto-sp13_S_contig78881.19163.1 ID=prot_Ecto-sp13_S_contig78881.19163.1|Name=mRNA_Ecto-sp13_S_contig78881.19163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
VLERGPQDDKEAHALAECVFAVATVAKGHIEAAEESLAAARDETGGKLPA
GAFAALLPGVRVAWYLETLQACGFNAFDESLRPQSPFKFQLRLGRAMITE
KF*
back to top

mRNA from alignment at Ecto-sp13_S_contig78881:23..331+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78881.19163.1 ID=mRNA_Ecto-sp13_S_contig78881.19163.1|Name=mRNA_Ecto-sp13_S_contig78881.19163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78881:23..331+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTGGAGAGGGGGCCGCAGGACGACAAGGAGGCCCATGCGCTCGCCGA
GTGCGTGTTCGCCGTGGCCACTGTCGCGAAGGGGCACATCGAAGCGGCGG
AGGAAAGTCTCGCAGCGGCACGGGACGAGACGGGGGGCAAGCTTCCTGCC
GGAGCGTTCGCGGCTCTGCTGCCGGGAGTTCGGGTGGCGTGGTACCTGGA
AACGCTCCAGGCCTGCGGGTTCAACGCGTTCGACGAGAGCTTGAGACCTC
AGAGCCCGTTCAAGTTCCAGTTGCGCTTGGGTAGGGCTATGATCACGGAG
AAATTTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78881:23..331+

>mRNA_Ecto-sp13_S_contig78881.19163.1 ID=mRNA_Ecto-sp13_S_contig78881.19163.1|Name=mRNA_Ecto-sp13_S_contig78881.19163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78881:23..331+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTGGAGAGGGGGCCGCAGGACGACAAGGAGGCCCATGCGCTCGCCGA
GTGCGTGTTCGCCGTGGCCACTGTCGCGAAGGGGCACATCGAAGCGGCGG
AGGAAAGTCTCGCAGCGGCACGGGACGAGACGGGGGGCAAGCTTCCTGCC
GGAGCGTTCGCGGCTCTGCTGCCGGGAGTTCGGGTGGCGTGGTACCTGGA
AACGCTCCAGGCCTGCGGGTTCAACGCGTTCGACGAGAGCTTGAGACCTC
AGAGCCCGTTCAAGTTCCAGTTGCGCTTGGGTAGGGCTATGATCACGGAG
AAATTTTGA
back to top