mRNA_Ecto-sp13_S_contig7886.19161.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7886.19161.1
Unique NamemRNA_Ecto-sp13_S_contig7886.19161.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7886.19161.1 vs. uniprot
Match: D7G521_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G521_ECTSI)

HSP 1 Score: 525 bits (1352), Expect = 1.270e-184
Identity = 337/353 (95.47%), Postives = 339/353 (96.03%), Query Frame = 1 
Query:   28 RTKKAELASSFLEWTSDPIHKSLTDVSGLKGEAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKGLEMTELRGELYVQAMKQLTKNANPASVQRCWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPPAANNTAAAXXXXXXXXXXXXXXXXXXXXXXXGSYGQQAAGANGGGADPAMXXXXXXXXXXXXXXXXPSEPKARVLYDYDPAGQEGMVAVSAGQVVGVTNRDNPDWWMASLDGGVEGWVPANYLEMQ 1086
            R KKAELASSFLEWTSDPIHKSLTDVSGLKGEAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKGLEMTELRGELYVQAMKQLTKNANPASVQRCWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PPA       XXXXXXXXXXXXXXXXXXXXXX G YGQ AAG NGGGADPAMXXXXXXXXXXXXXXXXPSEP+ARVLYDYDPAGQEGMVAVSAGQ+VGVTNRDNPDWWMASLDGGVEGWVPANYLEMQ
Sbjct:   40 RAKKAELASSFLEWTSDPIHKSLTDVSGLKGEAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKGLEMTELRGELYVQAMKQLTKNANPASVQRCWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGYGQPAAGTNGGGADPAMXXXXXXXXXXXXXXXXPSEPQARVLYDYDPAGQEGMVAVSAGQMVGVTNRDNPDWWMASLDGGVEGWVPANYLEMQ 392
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BLAST of mRNA_Ecto-sp13_S_contig7886.19161.1 vs. uniprot
Match: A0A6H5KSK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK5_9PHAE)

HSP 1 Score: 535 bits (1378), Expect = 3.630e-176
Identity = 338/353 (95.75%), Postives = 341/353 (96.60%), Query Frame = 1 
Query:   28 RTKKAELASSFLEWTSDPIHKSLTDVSGLKGEAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKGLEMTELRGELYVQAMKQLTKNANPASVQRCWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPPAANNTAAAXXXXXXXXXXXXXXXXXXXXXXXGSYGQQAAGANGGGADPAMXXXXXXXXXXXXXXXXPSEPKARVLYDYDPAGQEGMVAVSAGQVVGVTNRDNPDWWMASLDGGVEGWVPANYLEMQ 1086
            + KKAELASSFLEWTSDPIHKSLTDVSGLKGEAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKGLEMTELRGELYVQAMKQLTKNANPASVQR WEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXX      XXXXXXXSAPPAAN+TAA XXXXXXXXXXXXXXXXXXXXXXXG YGQQAA  NGGGADPAMXXXXXXXXXXXXXXXXPSEP+ARVLYDYDPAGQEGMVAVSAGQVVGVTNRDNPDWWMASLDGGVEGWVPANYLEMQ
Sbjct: 1033 KAKKAELASSFLEWTSDPIHKSLTDVSGLKGEAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKGLEMTELRGELYVQAMKQLTKNANPASVQRYWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXXGSSNGGXXXXXXXSAPPAANSTAAXXXXXXXXXXXXXXXXXXXXXXXXGGYGQQAAITNGGGADPAMXXXXXXXXXXXXXXXXPSEPQARVLYDYDPAGQEGMVAVSAGQVVGVTNRDNPDWWMASLDGGVEGWVPANYLEMQ 1385
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BLAST of mRNA_Ecto-sp13_S_contig7886.19161.1 vs. uniprot
Match: A0A836C908_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C908_9STRA)

HSP 1 Score: 283 bits (725), Expect = 1.850e-82
Identity = 191/352 (54.26%), Postives = 221/352 (62.78%), Query Frame = 1 
Query:   28 RTKKAELASSFLEWTSDPIHKSLTDVSGLKGEAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKGLEMTELRGELYVQAMKQLTKNANPASVQRCWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPPAANNTAAAXXXXXXXXXXXXXXXXXXXXXXXGSYGQQAAGANGGGADPAMXXXXXXXXXXXXXXXXPSEPKARVLYDYDPAGQEGMVAVSAGQVVGVTNRDNPDWWMASLDGGVEGWVPANYLEM 1083
            +  KA+LA  FL  T++PIHKSL  VSGLKGEA KQFKN+LGY GDRKYQYPDPL+ +IVAKGLE+  LR ELYVQAMKQLT N NP S QRCWEV+ +LL  FPPP+D+ENYVH FVR  AP   R+K KLAVHMSV +G K  AP  +EIP +L  FF+R I  RYNIE+DVVS  P      R GW AAXXXXXXXXXXXXXXXX                     N  AAA                         YG               XXXXX  XXXXXXXXX S P AR LYDYDPAGQ GM+A+  GQ + + +R+  DWWMA  +G  +GWVPA+Y+++
Sbjct: 1145 KKSKADLARGFLSHTTEPIHKSLLRVSGLKGEALKQFKNLLGYAGDRKYQYPDPLLHEIVAKGLEVPTLRSELYVQAMKQLTDNPNPQSEQRCWEVLMLLLHTFPPPEDVENYVHAFVRARAPAGQRDKLKLAVHMSVVEGAKAAAPPEREIPAILGAFFDRAIEPRYNIEQDVVSAAPPPRRAERAGWGAAXXXXXXXXXXXXXXXXYQ-------------------NGAAAAATP----------------------YGAXXXXXX------XXXXXXXPLXXXXXXXXXXSAPTARALYDYDPAGQAGMLALRMGQALVIKDREGADWWMAETEGQ-QGWVPASYVQL 1448
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BLAST of mRNA_Ecto-sp13_S_contig7886.19161.1 vs. uniprot
Match: A0A7S1U0W2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0W2_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.020e-35
Identity = 82/194 (42.27%), Postives = 120/194 (61.86%), Query Frame = 1 
Query:   16 FGVFRTKKAELASSFLEWTSDPIHKSLTDVSGLKGE--AKKQFKNMLGYCGDRKYQYPDPLIRDIVAKGLE-MTELRGELYVQAMKQLTKNANPASVQRCWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRP 588
            FG+   KK ++A+  L  T+ PIH  LTD+        A +QF++++ Y GDR Y YPD LI + +  GL   +ELR E Y+Q MKQL  N +  S ++ WEV+  +L+ FPPP+ +EN+V  F+R  APE  ++KF +A+H S Y G +    S+ E P +LS F+E+E+SA+Y   +D VSV+  RP  S P
Sbjct:  726 FGLAFNKK-DVAAGMLNHTAKPIHACLTDLEAEDERKLATRQFRSLMAYMGDRAYSYPDQLIAEYLELGLRGKSELRAEFYIQVMKQLRNNPSTESAKKGWEVMIFMLSSFPPPESVENFVALFLRQMAPEGQKDKFSIALHASTYGGGRSAPISLPEFPQILSKFYEQEMSAKYG-SDDYVSVR-GRPVSSTP 916
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BLAST of mRNA_Ecto-sp13_S_contig7886.19161.1 vs. uniprot
Match: A0A7S2WRB6_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WRB6_9STRA)

HSP 1 Score: 120 bits (300), Expect = 6.100e-26
Identity = 60/157 (38.22%), Postives = 96/157 (61.15%), Query Frame = 1 
Query:   34 KKAELASSFLEWTSDPIHKSLTDVSG-LKGEAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKGLEMTE-LRGELYVQAMKQLTKNANPASVQRCWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLS 498
            K+ ELA + L+W    I  SLT +   L   A +  K +LG+CGD+    P+ L ++IV+ G++ +E LR E+Y Q +K LT+N +P S+ + W++  + +  FPP  D+ NY+H F+R NAP   ++ +K  ++   YDG K  AP+V +IP L+S
Sbjct: 1217 KREELARNMLKWQKGGIKTSLTQMDPTLAKNAVRIHKAILGWCGDKTNPSPNSLAQEIVSSGIQQSEKLRDEIYCQILKHLTENPDPQSLSQAWKLFALCIQYFPPSTDLGNYLHIFIRNNAPPHLKDSYKQYLYSIEYDGAKPVAPAVDQIPSLVS 1373
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BLAST of mRNA_Ecto-sp13_S_contig7886.19161.1 vs. uniprot
Match: A0A7S3YT57_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YT57_9EUKA)

HSP 1 Score: 115 bits (289), Expect = 1.730e-24
Identity = 52/164 (31.71%), Postives = 99/164 (60.37%), Query Frame = 1 
Query:   16 FGVFRTKKAELASSFLEWTSDPIHKSLTDVSGLKG-EAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKGLEMTELRGELYVQAMKQLTKNANPASVQRCWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDT-REKFKLAVHMSVYDGVKETAPSVKEIPPLLSG 501
            F +F + + EL  +   WT  PIH SL ++ G  G +A + F+N+LG+ GDR+Y +P+ L+++I+ +G++   LR EL+ Q +KQ+T+N +  S  + W  + + L  FPP  + ENY   ++R N  ++  R ++   +H +++ G ++  PS  ++  +++G
Sbjct: 1189 FTLFSSTREELQRTMFRWTKSPIHASLIELPGRLGKDATRMFRNLLGFMGDRQYNFPELLLKEILEQGIQNPPLRDELFAQIIKQITQNPDNQSSHKGWSAMAVCLESFPPQPEFENYFEVWIRKNIKDEAKRTRYLTLLHQAIFCGARQFPPSEGDMKRIMAG 1352
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BLAST of mRNA_Ecto-sp13_S_contig7886.19161.1 vs. uniprot
Match: A0A7S4IN46_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IN46_9EUKA)

HSP 1 Score: 109 bits (272), Expect = 2.680e-22
Identity = 51/150 (34.00%), Postives = 89/150 (59.33%), Query Frame = 1 
Query:   37 KAELASSFLEWTSDPIHKSLTDVSGL-KGEAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKGLEMTELRGELYVQAMKQLTKNANPASVQRCWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEI 483
            K ++    + W+  PIH  LT +  L + ++   FKN++G+ GDR   +P+ L R+++ KG++  ELR E+Y+Q +KQ+T N NP+S ++ ++++ M L CFPP  + ENY+  + R N  +      + A+H  V+ G     PS ++I
Sbjct: 1275 KDKVKEQMMNWSKHPIHAPLTRIPNLFQKDSVLSFKNIMGFMGDRVMSFPNMLAREVLEKGIQQPELRDEIYIQLIKQVTVNPNPSSTEKGYKMMNMCLHCFPPSTEFENYLEIYFR-NKGDSKSNDLRKALHQIVWSGPVAVPPSPEQI 1423
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BLAST of mRNA_Ecto-sp13_S_contig7886.19161.1 vs. uniprot
Match: A0A6B2KWF1_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KWF1_9EUKA)

HSP 1 Score: 100 bits (248), Expect = 3.320e-19
Identity = 56/155 (36.13%), Postives = 92/155 (59.35%), Query Frame = 1 
Query:   37 KAELASSFLEWTSDPIHKSLTDVSG--LKGEAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKGLEMTELRGELYVQAMKQLTKNANPASVQRCWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLL 495
            K ++ +S L+W+ + I  SLT +    L  EA + FKN++G+ GD++ QYP  + R++V KG ++  LR E+YVQ +KQLT N N  S Q+ W+++ + L  FPP    E+Y+  F+R N   + R      +H +  +GV +  PS ++I  L+
Sbjct: 1163 KDKVKNSMLQWSKETIPTSLTTIEDKLLLKEAVRNFKNIMGWSGDKQVQYPQMVAREVVEKGCQLPALRDEIYVQIIKQLTDNPNNESTQKLWQLMQLCLLHFPPTNMFEHYLESFLR-NKGGEPRWYTIRTLHDTQENGV-QPVPSGEQIDVLI 1315
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BLAST of mRNA_Ecto-sp13_S_contig7886.19161.1 vs. uniprot
Match: A0A7S3LM69_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LM69_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 6.890e-19
Identity = 59/180 (32.78%), Postives = 90/180 (50.00%), Query Frame = 1 
Query:   34 KKAELASSFLEWTSDPIHKSLTDVSG--LKGEAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKGLEMT---------------------ELRGELYVQAMKQLTKNANPASVQRCWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGF 504
            K+ E A++ L WT   I  SL D  G      A K  K +LG+CGD+   +P+ L R+IVA  L ++                     ++R E++   MK  T N +  SV + W++  + +  F   +D+ NYVH F+R NAP   ++K   A++   Y+G K   PSV +IP L+S F
Sbjct:  669 KREEFATNMLCWTKYTILASLLDAEGPYFSKTAIKLHKAILGFCGDKNNPHPNSLAREIVATALTISADTGSSNQRGSIRYGSTNIGIDVRDEIFCLLMKHTTANPSAHSVSQAWKLFGLCIQFFSAGEDLSNYVHIFIRRNAPSHLKQKLIDAMYTREYEGSKTVPPSVDQIPLLISNF 848
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BLAST of mRNA_Ecto-sp13_S_contig7886.19161.1 vs. uniprot
Match: A0A5A8CSV2_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CSV2_CAFRO)

HSP 1 Score: 91.7 bits (226), Expect = 2.370e-16
Identity = 60/176 (34.09%), Postives = 92/176 (52.27%), Query Frame = 1 
Query:   10 VLFGVFRTKKAELASSFLEWTSDPIHKSLTDVSG--LKGEAKKQFKNMLGYCGDRKYQYPDPLIRDIVAKGLEMTELRGELYVQAMKQLTKNANPASVQRCWEVVTMLLTCFPPPKDMENYVHYFVRCNAPE----DTREKFKLA-VHMSVYDGVKETAPSVKEI------PPLLS 498
            V+FG     K  L ++ L W S  I++SL ++    L   A +  KN+LGYCGD++  +P  L +DI+ KGL+  ELR E+Y+  +KQLT N    S  RCW+++ M +  FPP  + E  +  F+  +           ++ L  +  SV  G     PSV+EI      PP+L+
Sbjct: 1566 VMFG-----KKRLMANQLTWQSTTINRSLLELPNKPLNKMATRLHKNILGYCGDKQMSFPAMLAQDILQKGLDEAELRDEIYLLVLKQLTGNTVKTSEMRCWQLICMCVGTFPPTHEFEYCLLNFLLSHRESMGTVGNYARYALRRLEGSVTAGASAFVPSVEEILAYKDRPPILA 1736
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7886.19161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G521_ECTSI1.270e-18495.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSK5_9PHAE3.630e-17695.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C908_9STRA1.850e-8254.26P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S1U0W2_9STRA2.020e-3542.27Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WRB6_9STRA6.100e-2638.22Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S3YT57_9EUKA1.730e-2431.71Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S4IN46_9EUKA2.680e-2234.00Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A6B2KWF1_9EUKA3.320e-1936.13Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A7S3LM69_9STRA6.890e-1932.78Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A5A8CSV2_CAFRO2.370e-1634.09Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7886contigEcto-sp13_S_contig7886:1529..6476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score109.0
Seed ortholog evalue4.7e-21
Seed eggNOG ortholog227086.JGI_V11_140911
Model size1089
KEGG koko:K10357,ko:K21868
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0015629,GO:0016459,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
Exons6
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
Ec32 ortholog descriptionMyTH4 domain
Ec32 orthologEc-00_008190.1
Cds size1089
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7886.19161.1prot_Ecto-sp13_S_contig7886.19161.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7886 1529..6476 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464059.456084-CDS-Ecto-sp13_S_contig7886:1528..16301681464059.456084-CDS-Ecto-sp13_S_contig7886:1528..1630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7886 1529..1630 -
1681464059.4722798-CDS-Ecto-sp13_S_contig7886:2498..29581681464059.4722798-CDS-Ecto-sp13_S_contig7886:2498..2958Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7886 2499..2958 -
1681464059.4832242-CDS-Ecto-sp13_S_contig7886:3288..33921681464059.4832242-CDS-Ecto-sp13_S_contig7886:3288..3392Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7886 3289..3392 -
1681464059.4944353-CDS-Ecto-sp13_S_contig7886:4445..45171681464059.4944353-CDS-Ecto-sp13_S_contig7886:4445..4517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7886 4446..4517 -
1681464059.508605-CDS-Ecto-sp13_S_contig7886:5099..52361681464059.508605-CDS-Ecto-sp13_S_contig7886:5099..5236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7886 5100..5236 -
1681464059.5188956-CDS-Ecto-sp13_S_contig7886:6262..64761681464059.5188956-CDS-Ecto-sp13_S_contig7886:6262..6476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7886 6263..6476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7886.19161.1

>prot_Ecto-sp13_S_contig7886.19161.1 ID=prot_Ecto-sp13_S_contig7886.19161.1|Name=mRNA_Ecto-sp13_S_contig7886.19161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=363bp
MVFVLFGVFRTKKAELASSFLEWTSDPIHKSLTDVSGLKGEAKKQFKNML
GYCGDRKYQYPDPLIRDIVAKGLEMTELRGELYVQAMKQLTKNANPASVQ
RCWEVVTMLLTCFPPPKDMENYVHYFVRCNAPEDTREKFKLAVHMSVYDG
VKETAPSVKEIPPLLSGFFEREISARYNIEEDVVSVKPTRPPPSRPGWAA
AAASAAAASASAAPASATAGSSNGGYGGYGGYSAPPAANNTAAAGGYGGY
SAPAAATPAAAAGGYAGGSYGQQAAGANGGGADPAMPAMPSMAAPPLPPK
PKPSEPKARVLYDYDPAGQEGMVAVSAGQVVGVTNRDNPDWWMASLDGGV
EGWVPANYLEMQ*
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mRNA from alignment at Ecto-sp13_S_contig7886:1529..6476-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7886.19161.1 ID=mRNA_Ecto-sp13_S_contig7886.19161.1|Name=mRNA_Ecto-sp13_S_contig7886.19161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4948bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7886:1529..6476- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTTTGTTCTATTCGGGGTTTTCAGGACCAAGAAGGCGGAGCTGGC
GAGCTCTTTCCTGGAGTGGACGTCCGACCCTATCCACAAGTCCCTCACCG
ACGTGTCGGGCCTCAAGGGGGAGGCCAAGAAGCAGTTCAAGAACATGCTG
GGCTACTGCGGGGACCGCAAGTACCAGTACCCGGACCCTCTCATCAGAGA
CATCGTGGCGAAGGGTAAGCTTATCATAGCTTACTCCCCACCCCCCATCC
CACCCTGTTTCTTCCCTCTTCTCTCACCAAAGTTGTTTGAAAAACTTGCG
TCGAAAAAATGGCGTGGTGTACAAGTGATCCCTCTGGAGTGGGCTCATGA
GAGCACAGGAGTGGCGCCAAGGGGTGCGGAAAGCAAAATGGAAATATTCG
CAGGCAGCAGGACTAACAACCCAGTAGCTGCATCCAGCTGCGGTGTGATG
GTTCCCAAGTTGAACAGCTCACGCCCAGATCGAAGAGCTCGCCGAACCTG
AACGGGGCAAAAATATATTTATTCTCATCTATTACTACACGTCTTGTGTC
GAGAGGCTTGGAGGCGGGCGGCTTCTCCCGTGCGTCGCGTTCCTGCCGTG
TGCCGCGTTCTTTGCCCACCCGCTCGCGTTCCGCCTACCCGCCCCCTCGC
AATCTGAAAGTAGCTTCGAAGTTGATGGCGTTCAACGTCAACCGGACATT
CCAGCAGGACGTGCCACACGTGCTGCTGGAACGTCCGTCACGTCGCTGCT
GAAATGTCCGGGTTGATGTTGAACGCCATCAACTTCGAAGCTACTTTCAG
ATTGCGAGGGGGCGGGGAGGGTTCGCGAGCGGGGGGGCAAATAATACAAT
TTTTGTTGATGTACCAATACATAACAGCAAATGATGATTATTCGAGATTT
TGTGCTTTGAGTTTTGCCGCGTACTGGCAGCAGAGGACCAAGTGTTGATT
GAGAACTACAGGTTGATCGTCGCAGGGCACAACCTATTACACCCGTGCAC
GTTCACGAGGAGGCATTGCTTTGGATGTGCCCTGGTTTACGCATGACAAA
TGTACGTCCCTACCGATATGCACATGAAACTTTGTGTTGGCATGTTTTTT
TACCCCGTACGCGTAATCACCCCCTCCCGGCCCTTGTTCTGTGTGCAACC
CCCTCGCCTCTGTCTGTCTTTGTCTCGCTGTCTCGCTTTCTCTTTGTCTC
TCTGTCGATCTACCTCTGTGCCTCTTTCTCGTTCTGTCAGGGTTGGAAAT
GACCGAGCTACGAGGGGAGCTTTACGTGCAGGCGATGAAGCAGCTGACGA
AGAACGCCAACCCAGCCTCCGTGCAGCGGTGCTGGGAGGTGGTGACAATG
CTCCTTACGTGCTTCCCCCCACCCAAGGTCAGTCACTCATCGCTCATCGC
CCAGACATGTACTTCGCCGAAGCGGTTCTAACTTCCTTCTTGTCTGTGCG
TTTTTTCTTGTTCTAGCGTTACTAATTACTACTGAAGTACAAGTAGATAT
TTCTACATTGGAAGTTATTTTAGAATGTTCTTCCTTCCTGTCTGGTGATT
TCCAGAGACGGTCTTCTGGAACCTGAAACCGCTTCGTTTCCTCTTTGAGC
AGAGCAATCCTCCGGACTTCACTCCAGAATTCCTGCGTGTTTTCGTTCTT
CCCCCTAGTAATCTAGCTCTTCCCCTCCCGCTGGCCCTTTCCATGTCCGT
GCTCCTGTACTTACCCCTTGAATTATTTCTCTCCGCGTGTTTGCGCCCTA
GCTCTACGTTGTGCACGGGGGCTCCCGTGGATCATAACCCCTCCTATGTC
CTGTTTCAATCCCGTCTCTTGTCCCCTCCCTCTCGTCGCTGTCTTTTCTC
CGGGTTGGTTTTGAGCCGCGGTCCAACGAGCTACAAACTAAATCAGCCCT
TACCCCCCCTCTCCCCCTCTCGCGGTCGTTGCCGTTACGAATCCGGCCGG
CCCTTCCAGGACATGGAAAACTACGTGCACTACTTCGTGCGGTGCAACGC
TCCGGAAGACACTCGCGAGAAGTTCAAGCTGGTGAGAACCGTCCACGACA
TTTTTTATTGTTTTCTTTCTCTTGTTCCTTGGTCAGTTGTGTTTATTGTT
GGAAGCCTAGGCTACGCTAGGCTACCTCTCTGTTGGTTTGTCGGTTTTGT
TTGTTGTTGGAAGGCCTAGTTGAAGGAGCCCCAGCTGTTGGTAGCAGCTG
CGGATTAAGGTAAAGAAAAAGGTACAGTCACTTGATACCCTGCACTGCCT
CCATGATTGTGTAGAAATGGGATGTTGCCTGAAATGAGCGAGCGAGCGAG
AGAGGTCTGGTTGAGGTGGGTGATCCACCTTTCAACCAGGGAGCACACAG
ATAGCTGAGTACTGATTTGTGTTTGGTCCCTCAGAGGTATACCTCCCGGC
CAGGCCGCAGCAACGACGGCGCAAAAGTTGGCGGCGTTGGAACCGTCTCG
TCGAGAGCTTTAAACGTACCGGTCAAATTGTTTTGGCGTCCTCTGCATCG
CAGACTATTCGAGCTTTGAAAATCGGCCAGGGGGGTATGGTATCTTACGC
AATCTTCGGCACGCTCGACGTTGTCGTTGTTTTTTGCTGCTGCTGCTGCT
GCTGCTGCTGTTGTTCGAGAAAGCGGTTGTTGTTGTTGTTGTTGTTGTCA
TGCTGAAACCCGTTACGATCTCTTCACCTATTTAGTACCTTCATCTGTCC
GTACTGATCGAACACTTGACAGAGCGATCCCCGTGGTCACAGGCTCACCT
AATAATGGGGTGTAATGATAGTATCTTATTAAACTTACGGTATTATCGAC
ATTTTCGTTGTTGCTGTTTTTTTATGTATTTGGATCGTCGCCCTTCCGTG
GTCCCTCTGGCGTACGTGTGAGCTTTTGCGAGCCTTGTCTATCTCACTTC
ATTGCCGCTCGCGTACATATGCGTCGCCATCCTCCCGTCATCGAATCCAC
CCCGACGAAGAAAGAAACACTGACGGACTCTTGTGCAAACCCCCCGTCGC
TTGCACACGTTTCGCGATTCCTGTCTCTCTTGGGGCGCACGCGCGCGTGT
GTGTGTGTGCTTCTTTCTTGGTTACGTCCGGTAGGCCGTGCACATGTCCG
TGTACGACGGTGTTAAGGAAACAGCCCCGAGCGTTAAGGAAATCCCCCCG
CTGCTGTCCGGCTTCTTCGAAAGGGAGATCAGCGCCAGGTTAGCAGGAAG
AACCAGGGGGCGACGGGCGGCGGGTGGGGGGTGGGGGTCTGGGGGCTGTG
TCATTGGTTGTGCTGCGTGTGGTGCTCTTGCTGTTCCATTCTACGATGAC
ATGCCACCTTTCACAGGGGCTTGGAGGGTACAAGCGTTTTTCTAAGGTAG
CCCAACTGCGCCGACTCATATTTTTTTGTTTTGGAACTCGTGGATTGATG
GGTTTTTTTTTGTGCGACACACACGGCAGGGCTCGTAGATCTATTGGTTG
TTAGCTGTGCGTGTTCTCACGAAACAACCTCATTTCCCATCATCCTCTTG
CATACATATAACGCCCAGGTACAACATTGAGGAAGACGTGGTCAGCGTCA
AGCCGACGCGGCCCCCGCCGTCGCGCCCGGGCTGGGCCGCCGCCGCCGCC
TCCGCCGCCGCTGCCTCGGCGTCCGCCGCACCCGCCAGCGCCACCGCCGG
GAGCTCCAACGGAGGCTACGGCGGCTACGGCGGCTACTCGGCGCCACCGG
CTGCTAACAACACAGCGGCGGCGGGAGGTTACGGGGGATACTCCGCCCCC
GCGGCGGCGACGCCAGCAGCAGCTGCGGGGGGGTACGCGGGGGGGAGTTA
CGGGCAGCAGGCGGCGGGAGCGAACGGCGGCGGGGCGGACCCCGCGATGC
CGGCCATGCCGTCGATGGCGGCGCCGCCGCTGCCGCCGAAACCCAAGCCT
TCCGAGCCGAAGGCCAGGGTTTTGTACGACTATGATCCGGCGGGGCAGGA
GGGGATGGTGGCCGTTTCCGCTGGCCAGGTGCGTTGCTTTCGTTGGCTAG
CCGCCTTAGCTAGGATGTTGAGCGCTATATTATATGTGAAATAGAGAGCG
GGGTTTCGTTACGGCTACCCTAACCCCTAACCCCACTAAGAACCACGCTT
AACATTCTCGCGAAGGCTTCTGGTTTCATTCGTCGTTGATTTTTTTTTTT
TTTCGGTTGTACCTCTGTATTTGGTAATTCCTGGTGGGTTTTCCTAGCAT
GATGGCCGGCGGTGGTGTGGTTGGTGATTGCGAAGGGGTGGTGTGTGCAC
AGGTAATGATGGTGGTGATGGTGATGGTGCTGATGCTGGTGCTGTTGCTG
ATGCTGCTGCTGCTGCGGCGGTGGCGGCAAGTGTTGCCTTCCCACGGGAA
CGCTTGTCACGCAAAGTGTTGTTATGTAAGCATGTCGATCTAGATATGAT
TCACGGGGGTATGAAGTAAGTTAGAGTAGCTGCAGGGCCCCGTTCCTGAT
GGGTGAATTTCTTCTTCTCTTTCTGTTTTGTCTCTGTAAGAGATACGCGG
GAGTCGAGTTAGTTGCCTAGCAGCCCGGCCGGACCTTGGGTTCCCCCTGT
GTGTGCGTCAAAAGCACGATAGAAGGAGCTTAGAGCGGGGCGTAGAACCC
AGGATTCATGCGCTGGGTGGCCTCTTCGTATGTACTCCTGTCACCAGCTA
CCACCGCCGTAGTTGCCGCTCGCTCGCTCTTGAATAGGCTTGCTTGAGAG
CGGCGAAACCGTCGCCACAAGTCGATTGGTACGGCGTTCACGTACGGTCG
GGCTACAACAACCTGCTGTGTCTCCGCACAATGCACCAAGACGTGTTTGT
GTTTGTTCATTTTTACTTTTTCTGTCCCCCCGCATCGCACGCACAGGTGG
TCGGGGTAACCAACCGGGATAACCCAGACTGGTGGATGGCGTCATTGGAC
GGCGGCGTAGAAGGATGGGTGCCCGCGAACTACCTCGAGATGCAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7886:1529..6476-

>mRNA_Ecto-sp13_S_contig7886.19161.1 ID=mRNA_Ecto-sp13_S_contig7886.19161.1|Name=mRNA_Ecto-sp13_S_contig7886.19161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1089bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7886:1529..6476- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTTTGTTCTATTCGGGGTTTTCAGGACCAAGAAGGCGGAGCTGGC
GAGCTCTTTCCTGGAGTGGACGTCCGACCCTATCCACAAGTCCCTCACCG
ACGTGTCGGGCCTCAAGGGGGAGGCCAAGAAGCAGTTCAAGAACATGCTG
GGCTACTGCGGGGACCGCAAGTACCAGTACCCGGACCCTCTCATCAGAGA
CATCGTGGCGAAGGGGTTGGAAATGACCGAGCTACGAGGGGAGCTTTACG
TGCAGGCGATGAAGCAGCTGACGAAGAACGCCAACCCAGCCTCCGTGCAG
CGGTGCTGGGAGGTGGTGACAATGCTCCTTACGTGCTTCCCCCCACCCAA
GGACATGGAAAACTACGTGCACTACTTCGTGCGGTGCAACGCTCCGGAAG
ACACTCGCGAGAAGTTCAAGCTGGCCGTGCACATGTCCGTGTACGACGGT
GTTAAGGAAACAGCCCCGAGCGTTAAGGAAATCCCCCCGCTGCTGTCCGG
CTTCTTCGAAAGGGAGATCAGCGCCAGGTACAACATTGAGGAAGACGTGG
TCAGCGTCAAGCCGACGCGGCCCCCGCCGTCGCGCCCGGGCTGGGCCGCC
GCCGCCGCCTCCGCCGCCGCTGCCTCGGCGTCCGCCGCACCCGCCAGCGC
CACCGCCGGGAGCTCCAACGGAGGCTACGGCGGCTACGGCGGCTACTCGG
CGCCACCGGCTGCTAACAACACAGCGGCGGCGGGAGGTTACGGGGGATAC
TCCGCCCCCGCGGCGGCGACGCCAGCAGCAGCTGCGGGGGGGTACGCGGG
GGGGAGTTACGGGCAGCAGGCGGCGGGAGCGAACGGCGGCGGGGCGGACC
CCGCGATGCCGGCCATGCCGTCGATGGCGGCGCCGCCGCTGCCGCCGAAA
CCCAAGCCTTCCGAGCCGAAGGCCAGGGTTTTGTACGACTATGATCCGGC
GGGGCAGGAGGGGATGGTGGCCGTTTCCGCTGGCCAGGTGGTCGGGGTAA
CCAACCGGGATAACCCAGACTGGTGGATGGCGTCATTGGACGGCGGCGTA
GAAGGATGGGTGCCCGCGAACTACCTCGAGATGCAGTAA
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