mRNA_Ecto-sp13_S_contig78840.19159.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78840.19159.1
Unique NamemRNA_Ecto-sp13_S_contig78840.19159.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig78840.19159.1 vs. uniprot
Match: D7FP17_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP17_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.430e-26
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 QVLYDPSETKYEDLLTIFFGRHDPTQVNGQGNDKGTQYRAGVYFHDEQQ 147
            QVLYDPSETKY DLLTIFFGRHDPTQVNGQGNDKGTQYRAGVYFHDEQQ
Sbjct:  223 QVLYDPSETKYADLLTIFFGRHDPTQVNGQGNDKGTQYRAGVYFHDEQQ 271
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BLAST of mRNA_Ecto-sp13_S_contig78840.19159.1 vs. uniprot
Match: A0A2M6V5Y6_9BURK (Peptide methionine sulfoxide reductase MsrA n=2 Tax=unclassified Limnohabitans TaxID=2626134 RepID=A0A2M6V5Y6_9BURK)

HSP 1 Score: 79.3 bits (194), Expect = 6.730e-17
Identity = 41/73 (56.16%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    1 QVLYDPSETKYEDLLTIFFGRHDPTQVNGQGNDKGTQYRAGVYFHDE------QQVCGETK--LSGRTLTNAL 195
            QV YDPS+    +LL IFF  HDPT +N QGND GTQYR+G+YFHDE      QQV  E    LSGR +T  L
Sbjct:   69 QVSYDPSQISLRELLEIFFVIHDPTTLNRQGNDVGTQYRSGIYFHDEADRAVSQQVVDEVNQHLSGRVVTEVL 141
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BLAST of mRNA_Ecto-sp13_S_contig78840.19159.1 vs. uniprot
Match: A0A835ZFH4_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFH4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.450e-16
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 QVLYDPSETKYEDLLTIFFGRHDPTQVNGQGNDKGTQYRAGVYFHDEQQ 147
            +VL+DP++T ++ LL +F+GRHDPTQ+NGQGND GTQYR GVY+H E Q
Sbjct:  195 RVLFDPAQTTFDALLDVFWGRHDPTQLNGQGNDLGTQYRGGVYYHSEAQ 243
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BLAST of mRNA_Ecto-sp13_S_contig78840.19159.1 vs. uniprot
Match: A0A5C5Z4J2_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Planctomycetes bacterium CA13 TaxID=2527986 RepID=A0A5C5Z4J2_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 1.930e-15
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 QVLYDPSETKYEDLLTIFFGRHDPTQVNGQGNDKGTQYRAGVYFHDEQQ 147
            +V YDPS   YE++L IFF  HDPT +N QGNDKGTQYR+ +++HDE+Q
Sbjct:   64 EVYYDPSVRSYEEILEIFFKTHDPTSLNRQGNDKGTQYRSAIFYHDEKQ 112
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BLAST of mRNA_Ecto-sp13_S_contig78840.19159.1 vs. uniprot
Match: A0A3L7U7A3_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7U7A3_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 2.090e-15
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 QVLYDPSETKYEDLLTIFFGRHDPTQVNGQGNDKGTQYRAGVYFHDEQQ 147
            Q+ YDP E  YE LL +FF  HDPT +N QG D+GTQYR+GV+FHD+QQ
Sbjct:   69 QIEYDPHEVSYEKLLEVFFSTHDPTTLNRQGADQGTQYRSGVFFHDKQQ 117
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BLAST of mRNA_Ecto-sp13_S_contig78840.19159.1 vs. uniprot
Match: A0A7S3R3S8_DUNTE (Peptidylprolyl isomerase n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R3S8_DUNTE)

HSP 1 Score: 77.4 bits (189), Expect = 2.180e-15
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 QVLYDPSETKYEDLLTIFFGRHDPTQVNGQGNDKGTQYRAGVYFHDEQQ 147
            QV++DP +  YE LL +FF +HDPTQ+N QGND+GTQYR+GVY+H  +Q
Sbjct:  197 QVVFDPQQVSYEQLLELFFDKHDPTQLNQQGNDRGTQYRSGVYYHTPEQ 245
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BLAST of mRNA_Ecto-sp13_S_contig78840.19159.1 vs. uniprot
Match: A0A1J5LYM5_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Bacteroidetes bacterium MedPE-SWsnd-G1 TaxID=1860094 RepID=A0A1J5LYM5_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 2.510e-15
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 QVLYDPSETKYEDLLTIFFGRHDPTQVNGQGNDKGTQYRAGVYFHDEQQVCGETKLSGRTLTNAL 195
            Q+ YDP+   +E+LL IFF  HDPT +N QGND+GTQYR+ V++H+E Q     +L+  T+ NAL
Sbjct:   59 QISYDPTVLSFEELLEIFFNTHDPTTLNRQGNDRGTQYRSAVFYHNEAQ-----QLAANTMINAL 118
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BLAST of mRNA_Ecto-sp13_S_contig78840.19159.1 vs. uniprot
Match: A0A482S626_9ARCH (Peptide-methionine (S)-S-oxide reductase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S626_9ARCH)

HSP 1 Score: 73.2 bits (178), Expect = 2.840e-15
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 QVLYDPSETKYEDLLTIFFGRHDPTQVNGQGNDKGTQYRAGVYFHDEQQVCGETK 165
            QV +DPS   Y DLLT+FF   DPT VNGQGND G+QYR GVY+H   Q    T+
Sbjct:   32 QVTFDPSNLPYSDLLTVFFDIIDPTTVNGQGNDFGSQYRTGVYYHSSAQEAAATE 86
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BLAST of mRNA_Ecto-sp13_S_contig78840.19159.1 vs. uniprot
Match: A0A250XJL5_9CHLO (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XJL5_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 2.880e-15
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 QVLYDPSETKYEDLLTIFFGRHDPTQVNGQGNDKGTQYRAGVYFHDEQQ 147
            Q+ YD  E +YE LL +FF R DPT +N QGND GTQYR+G+Y+HDEQQ
Sbjct:   83 QMTYDEKEVQYEQLLDLFFSRVDPTTLNRQGNDSGTQYRSGIYYHDEQQ 131
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BLAST of mRNA_Ecto-sp13_S_contig78840.19159.1 vs. uniprot
Match: A0A3P3Y856_PLABS (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y856_PLABS)

HSP 1 Score: 76.3 bits (186), Expect = 3.040e-15
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 QVLYDPSETKYEDLLTIFFGRHDPTQVNGQGNDKGTQYRAGVYFHDEQQ 147
            QVLYDPS+  Y DLL +F+  HDPTQ N QGND+GTQYR+G+Y+ DE Q
Sbjct:   92 QVLYDPSKISYSDLLRLFWESHDPTQGNCQGNDRGTQYRSGIYYSDEDQ 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78840.19159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP17_ECTSI1.430e-2697.96Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A2M6V5Y6_9BURK6.730e-1756.16Peptide methionine sulfoxide reductase MsrA n=2 Ta... [more]
A0A835ZFH4_9STRA1.450e-1665.31Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A5C5Z4J2_9BACT1.930e-1561.22Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
A0A3L7U7A3_9BACT2.090e-1563.27Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
A0A7S3R3S8_DUNTE2.180e-1561.22Peptidylprolyl isomerase n=1 Tax=Dunaliella tertio... [more]
A0A1J5LYM5_9BACT2.510e-1550.77Peptide methionine sulfoxide reductase MsrA n=1 Ta... [more]
A0A482S626_9ARCH2.840e-1558.18Peptide-methionine (S)-S-oxide reductase n=1 Tax=a... [more]
A0A250XJL5_9CHLO2.880e-1563.27Peptide-methionine (S)-S-oxide reductase n=1 Tax=C... [more]
A0A3P3Y856_PLABS3.040e-1565.31Peptide-methionine (S)-S-oxide reductase n=2 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78840contigEcto-sp13_S_contig78840:318..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score108.6
Seed ortholog evalue1.1e-21
Seed eggNOG ortholog2880.D7FP17
Preferred nameMSRA4
Model size195
KEGG koko:K02214,ko:K07304,ko:K14442,ko:K16914
KEGG Pathwayko03018,ko04110,ko04111,ko04113,map03018,map04110,map04111,map04113
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0008113,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0031967,GO:0031975,GO:0033554,GO:0033744,GO:0034599,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0080167,GO:1901564
Exons1
EggNOG free text desc.peptide-methionine (S)-S-oxide reductase activity
EggNOG OGsCOG0225@1,KOG1635@2759
EC1.14.11.27,1.8.4.11,2.7.11.1,3.6.4.13
Cds size195
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464059.2464192-CDS-Ecto-sp13_S_contig78840:317..5121681464059.2464192-CDS-Ecto-sp13_S_contig78840:317..512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78840 318..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78840.19159.1prot_Ecto-sp13_S_contig78840.19159.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78840 318..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78840.19159.1

>prot_Ecto-sp13_S_contig78840.19159.1 ID=prot_Ecto-sp13_S_contig78840.19159.1|Name=mRNA_Ecto-sp13_S_contig78840.19159.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
QVLYDPSETKYEDLLTIFFGRHDPTQVNGQGNDKGTQYRAGVYFHDEQQV
CGETKLSGRTLTNAL
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mRNA from alignment at Ecto-sp13_S_contig78840:318..512-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78840.19159.1 ID=mRNA_Ecto-sp13_S_contig78840.19159.1|Name=mRNA_Ecto-sp13_S_contig78840.19159.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78840:318..512- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCTGTACGACCCTTCCGAGACAAAGTACGAGGATCTTCTGACAAT
CTTCTTCGGCAGGCATGACCCGACCCAGGTTAACGGACAGGGCAACGACA
AGGGCACCCAGTACAGGGCCGGGGTGTATTTCCACGACGAGCAACAGGTG
TGCGGGGAAACTAAATTGTCGGGGCGTACGCTAACAAACGCTTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78840:318..512-

>mRNA_Ecto-sp13_S_contig78840.19159.1 ID=mRNA_Ecto-sp13_S_contig78840.19159.1|Name=mRNA_Ecto-sp13_S_contig78840.19159.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78840:318..512- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCTGTACGACCCTTCCGAGACAAAGTACGAGGATCTTCTGACAAT
CTTCTTCGGCAGGCATGACCCGACCCAGGTTAACGGACAGGGCAACGACA
AGGGCACCCAGTACAGGGCCGGGGTGTATTTCCACGACGAGCAACAGGTG
TGCGGGGAAACTAAATTGTCGGGGCGTACGCTAACAAACGCTTTG
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