prot_Ecto-sp13_S_contig7884.19158.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7884.19158.1
Unique Nameprot_Ecto-sp13_S_contig7884.19158.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length258
Homology
BLAST of mRNA_Ecto-sp13_S_contig7884.19158.1 vs. uniprot
Match: D7FPN8_ECTSI (RecG-like helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN8_ECTSI)

HSP 1 Score: 389 bits (999), Expect = 3.940e-132
Identity = 227/258 (87.98%), Postives = 238/258 (92.25%), Query Frame = 0
Query:    1 MRTAAAARGALLALLLSLLGEGALGTCSRFEGREGGGKFHQLVRNQQPHSSASTASSTRSPPASFVGAGSSMLGQHAWRTAAARRVLTRPSFGLSRLQIVGSGAPKRGSSTSTVAARELRRETSSSGNDASDEIAATGTGDGTAATRGGKKGSGPRQARKAATGVAAARRAGKGAVVNESYAYAETLSYLSSPPENALKGVGPRKAEQLAKLAGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATVLLKVTPVVS 258
            MRTAAAARGALLALLLSLLGEGALGTCSRF GREGG K HQLV NQQP+SSA+TA+ST S  ASFVGAGS MLG HAWRTAAARRVLTRP+FGLSRLQ VGSGAP RGSSTSTVAARELRRETSSSGN+ASD+ A  GTGDGT+ATRGGKKGSGPRQARKAATGVAAARR GKGAVV+ESYAYAETLSYLSSPPE+ALKGVGPRKAEQLAKL GVTTVADLLWHLPTGMVDRRETS VA+LVEGEVAT+LLKV  V S
Sbjct:    1 MRTAAAARGALLALLLSLLGEGALGTCSRFGGREGGRKSHQLVCNQQPNSSATTAASTTSSRASFVGAGS-MLGLHAWRTAAARRVLTRPNFGLSRLQTVGSGAPTRGSSTSTVAARELRRETSSSGNNASDDFADKGTGDGTSATRGGKKGSGPRQARKAATGVAAARRGGKGAVVDESYAYAETLSYLSSPPEDALKGVGPRKAEQLAKL-GVTTVADLLWHLPTGMVDRRETSRVANLVEGEVATLLLKVVKVQS 256          
BLAST of mRNA_Ecto-sp13_S_contig7884.19158.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 3.130e-89
Identity = 169/187 (90.37%), Postives = 175/187 (93.58%), Query Frame = 0
Query:   72 MLGQHAWRTAAARRVLTRPSFGLSRLQIVGSGAPKRGSSTSTVAARELRRETSSSGNDASDEIAATGTGDGTAATRGGKKGSGPRQARKAATGVAAARRAGKGAVVNESYAYAETLSYLSSPPENALKGVGPRKAEQLAKLAGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATVLLKVTPVVS 258
            MLG+HAWRT AARRVLTRP+FGL RLQ VGSGAPKRGSSTSTVAARELRRETSSSGN+ASDE AATGTG GTAATR GKKGSGPRQARKA TGVAAARR GKGAVV+ESYAYAETLSYLSSPPE+ALKGVGPRKAEQLAKL GVTTVADLLWHLPTGMVDRRETSHVADLVEGEVAT+LLKV  V S
Sbjct:    1 MLGRHAWRTTAARRVLTRPNFGLYRLQTVGSGAPKRGSSTSTVAARELRRETSSSGNNASDEFAATGTGYGTAATRDGKKGSGPRQARKATTGVAAARRGGKGAVVDESYAYAETLSYLSSPPEDALKGVGPRKAEQLAKL-GVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATMLLKVVKVQS 186          
BLAST of mRNA_Ecto-sp13_S_contig7884.19158.1 vs. uniprot
Match: A0A2N3EAJ5_9PROT (ATP-dependent DNA helicase RecG (Fragment) n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3EAJ5_9PROT)

HSP 1 Score: 62.8 bits (151), Expect = 1.130e-7
Identity = 28/56 (50.00%), Postives = 42/56 (75.00%), Query Frame = 0
Query:  194 PENALKGVGPRKAEQLAKLAGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATV 249
            P  +L G+GPR  + + KLAG T V DLLWHLP+G++DRR    +A++++GE+AT+
Sbjct:   12 PARSLPGIGPRPEKLVEKLAG-TKVIDLLWHLPSGLIDRRARPKIAEVLDGEIATI 66          
BLAST of mRNA_Ecto-sp13_S_contig7884.19158.1 vs. uniprot
Match: A0A364NZP4_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Magnetospirillum kuznetsovii TaxID=2053833 RepID=A0A364NZP4_9PROT)

HSP 1 Score: 62.4 bits (150), Expect = 1.910e-7
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 0
Query:  194 PENALKGVGPRKAEQLAKLAGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATVLLKV 253
            P  AL GVGPR A    KLAG   V DLLWHLP+G++DRR    VAD  +G+VAT++++V
Sbjct:   12 PVTALPGVGPRMAPLYEKLAGAKVV-DLLWHLPSGVIDRRYCPKVADAPDGKVATLVVEV 70          
BLAST of mRNA_Ecto-sp13_S_contig7884.19158.1 vs. uniprot
Match: A0A1G7A333_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Rhodospira trueperi TaxID=69960 RepID=A0A1G7A333_9PROT)

HSP 1 Score: 61.6 bits (148), Expect = 3.460e-7
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 0
Query:  187 LSYLSSPPENALKGVGPRKAEQLAKLAGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATVLLKV 253
            L Y    P  +LKGVG R A  + KLAG   V D+LWHLPTG++DRR    VA+ V G +AT++L V
Sbjct:    5 LLYPLFQPITSLKGVGGRVAPLIEKLAG-PKVVDVLWHLPTGVIDRRHRPKVAEAVPGRIATLVLTV 70          
BLAST of mRNA_Ecto-sp13_S_contig7884.19158.1 vs. uniprot
Match: A0A5M6IDF6_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Roseospira marina TaxID=140057 RepID=A0A5M6IDF6_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 4.650e-7
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 0
Query:  187 LSYLSSPPENALKGVGPRKAEQLAKLAGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATVLLKV 253
            L Y    P ++LKGVG R A  + KLAG   V D+LWHLPTG++DRR    VA+ + G+VAT++L V
Sbjct:    5 LLYPLFQPVDSLKGVGSRVAPLVHKLAG-PKVVDVLWHLPTGVIDRRYRPTVAEAIPGKVATLVLTV 70          
BLAST of mRNA_Ecto-sp13_S_contig7884.19158.1 vs. uniprot
Match: A0A7X1ZCS1_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Roseospira navarrensis TaxID=140058 RepID=A0A7X1ZCS1_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 4.650e-7
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 0
Query:  187 LSYLSSPPENALKGVGPRKAEQLAKLAGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATVLLKV 253
            L Y    P  +LKGVG R A    KLAG   V D+LWHLPTG++DRR+   VA+ + G+VAT++L +
Sbjct:    5 LLYPLFQPVESLKGVGARVAPLFHKLAG-PKVVDMLWHLPTGVIDRRDRPTVAEAMPGKVATLVLTI 70          
BLAST of mRNA_Ecto-sp13_S_contig7884.19158.1 vs. uniprot
Match: A0A6L7ZYW1_9PROT (DNA helicase (Fragment) n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6L7ZYW1_9PROT)

HSP 1 Score: 59.3 bits (142), Expect = 5.750e-7
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 0
Query:  197 ALKGVGPRKAEQLAKLAGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATVLLKV 253
            AL G+GPR  E +A++AG   + DLLW LPTG+VDRR    VA+ V GE+AT+ +++
Sbjct:   15 ALPGIGPRLKELVARVAG-PRIVDLLWTLPTGLVDRRHAPKVAEAVIGEIATITVRI 70          
BLAST of mRNA_Ecto-sp13_S_contig7884.19158.1 vs. uniprot
Match: A0A178M5B6_9PROT (ATP-dependent DNA helicase RecG n=1 Tax=Magnetospirillum marisnigri TaxID=1285242 RepID=A0A178M5B6_9PROT)

HSP 1 Score: 60.5 bits (145), Expect = 8.370e-7
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 0
Query:  194 PENALKGVGPRKAEQLAKLAGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATVLLKV 253
            P   L GVGPR A    KLAG   V DLLWHLP+G++DRR +  VAD  +G+VAT++++V
Sbjct:   12 PVTTLAGVGPRLAPLYEKLAG-GKVVDLLWHLPSGVIDRRFSPKVADAPDGKVATLVVRV 70          
BLAST of mRNA_Ecto-sp13_S_contig7884.19158.1 vs. uniprot
Match: A0A8J7N4H3_9PROT (DNA helicase n=1 Tax=Candidatus Odyssella sp. TaxID=2589116 RepID=A0A8J7N4H3_9PROT)

HSP 1 Score: 58.9 bits (141), Expect = 1.050e-6
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 0
Query:  194 PENALKGVGPRKAEQLAKLAGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATVLLKV 253
            P   L GVGPR  E +A+ AG   + DLLWHLP+G+VDRR +  V +   GE+AT+ +KV
Sbjct:   12 PVTRLAGVGPRIGELIARAAG-EKIVDLLWHLPSGIVDRRHSPAVGEAKPGEIATLTVKV 70          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7884.19158.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPN8_ECTSI3.940e-13287.98RecG-like helicase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JXY9_9PHAE3.130e-8990.37ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A2N3EAJ5_9PROT1.130e-750.00ATP-dependent DNA helicase RecG (Fragment) n=1 Tax... [more]
A0A364NZP4_9PROT1.910e-755.00ATP-dependent DNA helicase RecG n=1 Tax=Magnetospi... [more]
A0A1G7A333_9PROT3.460e-750.75ATP-dependent DNA helicase RecG n=1 Tax=Rhodospira... [more]
A0A5M6IDF6_9PROT4.650e-750.75ATP-dependent DNA helicase RecG n=1 Tax=Roseospira... [more]
A0A7X1ZCS1_9PROT4.650e-749.25ATP-dependent DNA helicase RecG n=1 Tax=Roseospira... [more]
A0A6L7ZYW1_9PROT5.750e-750.88DNA helicase (Fragment) n=1 Tax=Rhodospirillaceae ... [more]
A0A178M5B6_9PROT8.370e-753.33ATP-dependent DNA helicase RecG n=1 Tax=Magnetospi... [more]
A0A8J7N4H3_9PROT1.050e-650.00DNA helicase n=1 Tax=Candidatus Odyssella sp. TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033454RecG, wedge domainPFAMPF17191RecG_wedgecoord: 198..253
e-value: 7.5E-7
score: 28.9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..258
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.833
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 196..254

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7884contigEcto-sp13_S_contig7884:3998..6837 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7884.19158.1mRNA_Ecto-sp13_S_contig7884.19158.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7884 3998..6837 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7884.19158.1 ID=prot_Ecto-sp13_S_contig7884.19158.1|Name=mRNA_Ecto-sp13_S_contig7884.19158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=258bp
MRTAAAARGALLALLLSLLGEGALGTCSRFEGREGGGKFHQLVRNQQPHS
SASTASSTRSPPASFVGAGSSMLGQHAWRTAAARRVLTRPSFGLSRLQIV
GSGAPKRGSSTSTVAARELRRETSSSGNDASDEIAATGTGDGTAATRGGK
KGSGPRQARKAATGVAAARRAGKGAVVNESYAYAETLSYLSSPPENALKG
VGPRKAEQLAKLAGVTTVADLLWHLPTGMVDRRETSHVADLVEGEVATVL
LKVTPVVS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033454RecG_wedge
IPR012340NA-bd_OB-fold