mRNA_Ecto-sp13_S_contig7882.19157.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7882.19157.1
Unique NamemRNA_Ecto-sp13_S_contig7882.19157.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7882.19157.1 vs. uniprot
Match: A0A6H5JKN3_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN3_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 2.780e-79
Identity = 144/151 (95.36%), Postives = 148/151 (98.01%), Query Frame = 2 
Query:  248 MGFFGMVLKPGHKEAVEVPPGWCLQLCTAALEPAKAGVKPRDVSATLWVQVEDSEICDNSYLLGSLQGGGPCAQIPVGHCLTSVDGEIIMEAKGGGTIHLTGFFSREYDPDAENDXXXXXXXXXXXXXXXX-GSNAELRSKLALLLADAEA 697
            MGFFGMVLKPG KEAVEVPPGWCLQLCTAALEPAKAGVKPR+VSATLWVQVEDSEI DNSYLLGSLQGGGPCAQIPVGHCLTSVDGE++MEAKGGGTIHLTGFF+REYDPDAENDXXXXXXXXXXXXXXXX GSNAELRSKLALLLADAEA
Sbjct:    1 MGFFGMVLKPGQKEAVEVPPGWCLQLCTAALEPAKAGVKPRNVSATLWVQVEDSEIGDNSYLLGSLQGGGPCAQIPVGHCLTSVDGEVVMEAKGGGTIHLTGFFNREYDPDAENDXXXXXXXXXXXXXXXXXGSNAELRSKLALLLADAEA 151
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BLAST of mRNA_Ecto-sp13_S_contig7882.19157.1 vs. uniprot
Match: D7FLP0_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLP0_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 7.100e-79
Identity = 142/150 (94.67%), Postives = 143/150 (95.33%), Query Frame = 2 
Query:  248 MGFFGMVLKPGHKEAVEVPPGWCLQLCTAALEPAKAGVKPRDVSATLWVQVEDSEICDNSYLLGSLQGGGPCAQIPVGHCLTSVDGEIIMEAKGGGTIHLTGFFSREYDPDAENDXXXXXXXXXXXXXXXXGSNAELRSKLALLLADAEA 697
            MGFFGMVLKPG KE VEVPPGWCLQLCTAALEPAKAGVKPRDVSATLWVQ EDSEI DNSYLLGSLQGGGPCAQIPVGHCLTSVDGEIIMEAKGGGTIHLTGFF+REYDPDAEND XXXXXXXXXXXXXXX  NAELRSKLALLLADAEA
Sbjct:    1 MGFFGMVLKPGQKETVEVPPGWCLQLCTAALEPAKAGVKPRDVSATLWVQAEDSEIGDNSYLLGSLQGGGPCAQIPVGHCLTSVDGEIIMEAKGGGTIHLTGFFNREYDPDAENDDXXXXXXXXXXXXXXXX-NAELRSKLALLLADAEA 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7882.19157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKN3_9PHAE2.780e-7995.36Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CC... [more]
D7FLP0_ECTSI7.100e-7994.67Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7882contigEcto-sp13_S_contig7882:2437..6455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score253.4
Seed ortholog evalue7.1e-65
Seed eggNOG ortholog2880.D7FLP0
Preferred nameFKBP15
Model size745
KEGG koko:K01802,ko:K07466,ko:K14826,ko:K17478
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000412,GO:0000413,GO:0000414,GO:0000415,GO:0000785,GO:0000792,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006457,GO:0006464,GO:0006807,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009719,GO:0009725,GO:0009755,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010506,GO:0010507,GO:0010563,GO:0010564,GO:0010605,GO:0010639,GO:0010921,GO:0010923,GO:0010948,GO:0016020,GO:0016043,GO:0016241,GO:0016242,GO:0016569,GO:0016570,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019220,GO:0019222,GO:0019538,GO:0022402,GO:0022414,GO:0022607,GO:0023052,GO:0030522,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031399,GO:0031400,GO:0031497,GO:0031974,GO:0031976,GO:0031981,GO:0031984,GO:0032268,GO:0032269,GO:0032870,GO:0033043,GO:0033044,GO:0033313,GO:0034357,GO:0034622,GO:0034728,GO:0035303,GO:0035305,GO:0035626,GO:0036211,GO:0040020,GO:0042221,GO:0042393,GO:0042651,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045786,GO:0045835,GO:0045936,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051276,GO:0051321,GO:0051336,GO:0051346,GO:0051445,GO:0051447,GO:0051598,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0055035,GO:0060255,GO:0061077,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070594,GO:0070887,GO:0071103,GO:0071310,GO:0071495,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1902275,GO:1903046,GO:1905268,GO:1990837,GO:2000241,GO:2000242,GO:2001251
Exons5
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
EC5.2.1.8
Cds size498
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03000,ko03009,ko03032,ko03110,ko03400,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7882.19157.1prot_Ecto-sp13_S_contig7882.19157.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7882 2437..6208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464059.0876684-CDS-Ecto-sp13_S_contig7882:2436..25911681464059.0876684-CDS-Ecto-sp13_S_contig7882:2436..2591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7882 2437..2591 -
1681464059.1017523-CDS-Ecto-sp13_S_contig7882:3148..32181681464059.1017523-CDS-Ecto-sp13_S_contig7882:3148..3218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7882 3149..3218 -
1681464059.1119716-CDS-Ecto-sp13_S_contig7882:4628..47001681464059.1119716-CDS-Ecto-sp13_S_contig7882:4628..4700Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7882 4629..4700 -
1681464059.121194-CDS-Ecto-sp13_S_contig7882:5195..52791681464059.121194-CDS-Ecto-sp13_S_contig7882:5195..5279Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7882 5196..5279 -
1681464059.130929-CDS-Ecto-sp13_S_contig7882:6091..62081681464059.130929-CDS-Ecto-sp13_S_contig7882:6091..6208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7882 6092..6208 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464059.1477642-UTR-Ecto-sp13_S_contig7882:6208..64551681464059.1477642-UTR-Ecto-sp13_S_contig7882:6208..6455Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7882 6209..6455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7882.19157.1

>prot_Ecto-sp13_S_contig7882.19157.1 ID=prot_Ecto-sp13_S_contig7882.19157.1|Name=mRNA_Ecto-sp13_S_contig7882.19157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
MGFFGMVLKPGHKEAVEVPPGWCLQLCTAALEPAKAGVKPRDVSATLWVQ
VEDSEICDNSYLLGSLQGGGPCAQIPVGHCLTSVDGEIIMEAKGGGTIHL
TGFFSREYDPDAENDDDSSEEEESSEEGSEEGSNAELRSKLALLLADAEA
EDSDDDDDEEEEEEGG
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mRNA from alignment at Ecto-sp13_S_contig7882:2437..6455-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7882.19157.1 ID=mRNA_Ecto-sp13_S_contig7882.19157.1|Name=mRNA_Ecto-sp13_S_contig7882.19157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4019bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7882:2437..6455- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGATGATGCTGTTTGCAGCGACGATAATGTGCCCTGCACAGCGCTCACT
GCAGCCCTTGCACCGTCCACGCGGTCCCGCGGTCACCGAGAGAATCAAAA
TTCCAGGTACGTTAAAACCCCGGGGATAATCCCCCACTATCCCCGGGTGT
CAAACAATTCACGGCCACATGCGGTAAATTACCGTCTTCCCCCAACACGC
ACTTGCACGATAGACACAGCTCCCAAAGACGCTGGCCATCCGTAGCTATG
GGCTTCTTCGGGATGGTGCTTAAGCCTGGACACAAGGAGGCCGTCGAGGT
CCCCCCCGGTTGGTGTCTCCAGCTTTGCACGGCAGCTCTTGAGCCAGCGA
AAGCAGGCGTAAAGGTACGTATGATCGCTACTGCTGTACCTTGCTGCTGT
ACGGCGGAGCTGTAGATGACACCCACACCACACCCTAACATGTTGATTGA
AAACTTGGGTGCCTGTATTTGAGGTGAATGGCTGTCAAGCCTGATTTCGA
CTCCCGTGTATGTACATATGCGGCGCTGAAGAGACCAGACGCCAAAAACT
AAAAAAAACACACTCGCGCTGACTCTATTTGCTCGGTGGTCGACGCTCCG
CTTGACGGCACACCTCACAAGCCGTCGATGATACCGTATATACCCCATGC
ACATTCGTGACGAGAGCGCTTGTGCGGTCGAAGCACAACATAGTTTTGTC
ATTGTGTGGTACAGTCAGTAAAAGCGCCGAGACTAACAGCGACTGTGCGT
GTGTTTTCGTCCCATTGTAACGGCATTTCGTAGAGCATTTAGACTGTACG
TAGGTTGCATGAAGTGTCACACACCCTGGGCCGATTTTCAGAGCTTGATT
GCTCGGCAAGGAAAGAAGTGACGATGTTGAAAAGGGCGGAGTTGGAACCG
TCCCGTTGAGGGCTTTCCGAACACGTATCCCTTGCCTTCGGCACCCTCTT
GGTCGTGGAGTAATCGAGCCTTGAAAATCGGTCCTGGGGGTGTGGTATCT
TACGCAACCTACGGTATGCTGTTGATCTGTTGGGACCCGTTTGAATTGTC
GCCCAATGACTACCAGCAGTGATGTTTACTCACCTGTAGGCTTAAACCTA
AGAATCGCCCTATACGTGTTAATTTTTTCTCTGCTTGTTTCTGCCACCGT
CACATCTTTTACCGACGATGCTACAGCCCCGGGATGTGTCCGCGACTTTG
TGGGTCCAGGTGGAGGATAGCGAGATCTGTGACAACTCATACCTGCTTGG
CAGCCTCCAGGTGAGGCGGACAGGCCACCGATGTGGATTGGCCATCCAGT
TTTTCCTTTTGGCCGAGTCATGGGTGGGTTTTGGAAGAGAAGGTCTATCT
ACAACAGGATGAGTCTTGCCTAGGTGGCACACATCCTATCTTGGCCGGCG
GTCTTGTAAGTCTGACTGCTTGGGTGATTTCTGACCGGTAGCCTGGTTCT
TGTTGACTGCTCCGACACGGGTTGCGCCAAAGGTGCGATGAGAAGTTGCG
CCTCTCTCTCTCTCGCTCGCTCGCTCTCTGTACGGAACTGCGTCAACATA
ATGCTCCGTCCTGTCGAGGACGAGTGGTCTAACTTCTCAAGGCATTACAA
ACACGAGTACGCCCCGCCCCTGCATCTAAGCTTGCGACGGCAGTGCAAGT
ATGTAAATGTGGTGGTGAAATTGTGAGCGACCGGCCCCGGATTCTCCCGC
CCGCCCTTCCTTTGACCGACCGTCCGTCCGACCTCCGCCTGTGTGTCGTG
CTAAGGGTGGCGGACCCTGCGCTCAAATCCCAGTGGGGCACTGCCTGACA
AGCGTAGACGGGGAAATCATCATGGAGGTAAGGCGCAGCGCGATGAGTAC
CAACGTACAGTGCGCACCGAGTTTTGGGCACCGTCGGTGACACAAGATAT
CACACTACCTAACCGATTTTAACAGCTCGAAAACGTGACGACGAGAAGAA
TGAGTACGTGTCAATTCGGATTGCCCTTGACGAGACGGTTCTAATGACGC
CACAAGTCTTTCTACCGTGGAGCAATCGGGCTTTAAAAATCACTTCCAAG
GGGTTGTGATGTCTTGTGTCACCTAGGGTAGAACTCTGGCATACCTGACG
GTCAAGTTCCACCGTAGACAAGGAGGCCGCGCTTGAACGCTGGCGGGTGG
CTCGGTGGATGCCTGAGACGCCGTTAGCGGTGGTAGATCCTTGCTACTCG
TTAGTTTCTCTCTCGATGATGGGATCCGGCTGCTACCTATTTCGTACTGC
GCGCGGCAACCCTCTCCCGTTTGGCGATAGCGCGACGTTTTCGCGACAAC
TGTACGTGTGCACAGGTCGCAGGCTTACAGGGCGAAGGTTTGACCTGTTC
TTTCTTTTGTCTCCCCTGAAAAAGCTAAGCTTACCCCTTGGCCGCGTCCG
TTTCTTCGGCAATGAACTTGCGGGCACCTTTTTGTTGTTTTCGCAGCAGC
GATAGCATGTGCTTGTCGAGACATTCGACGGAGCCCCCACCCTCGTCTCT
TTCCCTTCTCCGCCACGGCAGGGACCCCTTGATACCTGATGGGGTGAACA
CACCTCAAAATGTTCACGAGTCTGAAGCAGCCATCCGCACACACTGGCAT
TATTTTCATTGTTCAGCCGGTTTGAAGGGCCAATGCCAACGAAAGAATCA
CACACACGCACAGACTCAACCTACCCTCACTTATCAGGAAACCTTGCTGC
GCTAAGCTATCGTGCACTCCACGGCTGGTACAGCACCCGCTTGTTCCCCC
GGTAGGCTGTTGCCCGACACGCCCGTCCGCCTTTGTTTCCAATATGATTG
TGTGATTGGAGGATTTGCACAGCAGTTATTGTTGCTCGTGTCCCTCAAGA
AACAAGGAGATTGCTGCTGGGGCAGGGAAAGAGATTCGGTCGTGTTTTTT
GTTTTTTCTTTATCGTCAGCGAGAGAGCACAACCCCCCGACAGATATCGT
CCATGCGAAGGAAGGCTGGCGAGATGCGTTTTTTTTGGCATGACTCGGGC
ATTTTTTTTCGTCTCTTCTCCTGTTGGTGTATCTTTTATCTATTGGCGAG
GCATCCTCCGGCGGTGATTAGGAAGCCCAAGGCGTACGCCCATGCGTTGA
CGCCCTCCACCCTCAAGGCTCGTTGGACCGTCCCACGCACGGAGAATAGC
TTCCACTGCAACAGATGAGAATCCCGAGTTAAAGTGGTGTCAAATAAATA
ATCGGACCCGTGGTACGTATCCATGTTTTTTTGTCAGGCGAAGGGCGGGG
GTACTATTCACCTCACGGGCTTCTTCAGCAGGGAATACGACCCAGATGCT
GAGAACGGTAAGAGCGTCAACAAACTTGAACAACGAGAAACCTCAGCTCC
GAAGCGGGCTCCGAATCTGAGGAAGCACGTCTGGCAATATCTCACGGTGT
TCTCCTTCGTTGCCCTTGAGCGCTGCGCGGTAGCAGCTCCTCAAGGACAG
GTTTACCCGAGAGGGCGGATACACCAGCACAGAGGAACATTGGTCTCGTC
ATTTTTCCAGTACAGGTTTATCAGGGAAGACATACTCAAGTGCAAAACAA
CAATCAATTGTCTTAGTCCTGTCGTTTTGCGCACCTACCCCATATCGCTG
CTGTCGAACGCCGAAGTTGGGTCGTCGGGCGACTCGTGTCAGCTGCGACG
ATGATGTTCAGATTTCGCGGGGGATGGGGCTGGCTCGATCGATCGATGAA
CGGCGTTGTGCCAGTGCTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGC
TGCTACTGCTGTCGTGATGGTGGTGGCGTTCTAGTTATGATCGGGTTGGA
TGCCGAACTTGTGCTACAGCGTTATCGAACTTGTGAGACGCGTAACTTGG
TGTTGGGTGCGCAGACGACGACTCTAGCGAGGAGGAGGAATCGTCCGAGG
AAGGTTCCGAGGAAGGTTCCAATGCCGAGCTGCGCTCAAAGCTGGCCTTG
CTCCTGGCAGATGCGGAGGCGGAGGATAGTGACGATGACGATGACGAGGA
AGAAGAAGAAGAAGGAGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7882:2437..6455-

>mRNA_Ecto-sp13_S_contig7882.19157.1 ID=mRNA_Ecto-sp13_S_contig7882.19157.1|Name=mRNA_Ecto-sp13_S_contig7882.19157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7882:2437..6455- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCTTCTTCGGGATGGTGCTTAAGCCTGGACACAAGGAGGCCGTCGA
GGTCCCCCCCGGTTGGTGTCTCCAGCTTTGCACGGCAGCTCTTGAGCCAG
CGAAAGCAGGCGTAAAGCCCCGGGATGTGTCCGCGACTTTGTGGGTCCAG
GTGGAGGATAGCGAGATCTGTGACAACTCATACCTGCTTGGCAGCCTCCA
GGGTGGCGGACCCTGCGCTCAAATCCCAGTGGGGCACTGCCTGACAAGCG
TAGACGGGGAAATCATCATGGAGGCGAAGGGCGGGGGTACTATTCACCTC
ACGGGCTTCTTCAGCAGGGAATACGACCCAGATGCTGAGAACGACGACGA
CTCTAGCGAGGAGGAGGAATCGTCCGAGGAAGGTTCCGAGGAAGGTTCCA
ATGCCGAGCTGCGCTCAAAGCTGGCCTTGCTCCTGGCAGATGCGGAGGCG
GAGGATAGTGACGATGACGATGACGAGGAAGAAGAAGAAGAAGGAGGA
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