mRNA_Ecto-sp13_S_contig78802.19154.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78802.19154.1
Unique NamemRNA_Ecto-sp13_S_contig78802.19154.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig78802.19154.1 vs. uniprot
Match: D8LCF0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCF0_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 6.720e-62
Identity = 104/106 (98.11%), Postives = 106/106 (100.00%), Query Frame = 1 
Query:   16 QAGVVIVVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEGSLGKAGIICVEDLI 333
            +AGVVIVVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEG+LGKAGIICVEDLI
Sbjct:   85 EAGVVIVVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEGTLGKAGIICVEDLI 190
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BLAST of mRNA_Ecto-sp13_S_contig78802.19154.1 vs. uniprot
Match: A0A836CG85_9STRA (Ribosomal protein L30, ferredoxin-like fold domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG85_9STRA)

HSP 1 Score: 171 bits (432), Expect = 2.160e-51
Identity = 85/106 (80.19%), Postives = 98/106 (92.45%), Query Frame = 1 
Query:   16 QAGVVIVVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEGSLGKAGIICVEDLI 333
            +A + +V+RIRGIIGV PKVRKILQLLRLRQINN+VFVKLNAAT+KMLRLVEPY+AYGYPNLKT+++L+YKRGFGKV K RIPISDNSVIEG LGK GI+ V+DLI
Sbjct:   77 EAKLAVVIRIRGIIGVGPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTIKQLVYKRGFGKVRKSRIPISDNSVIEGVLGKYGIVGVDDLI 182
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BLAST of mRNA_Ecto-sp13_S_contig78802.19154.1 vs. uniprot
Match: A0A6V2QDA7_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2QDA7_HETAK)

HSP 1 Score: 169 bits (429), Expect = 1.120e-50
Identity = 85/106 (80.19%), Postives = 98/106 (92.45%), Query Frame = 1 
Query:   16 QAGVVIVVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEGSLGKAGIICVEDLI 333
            +A V  V+RIRGIIGVSPKVRKILQLLRLRQI+N VFVKLNAAT+KMLRLVEP++AYGYPNLK+V++L+YKRGFGKVN QRIP+S NSV+EG+LG  GIICVEDLI
Sbjct:   78 EAKVAFVIRIRGIIGVSPKVRKILQLLRLRQIHNGVFVKLNAATIKMLRLVEPFIAYGYPNLKSVKDLVYKRGFGKVNGQRIPLSCNSVVEGTLGDKGIICVEDLI 183
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BLAST of mRNA_Ecto-sp13_S_contig78802.19154.1 vs. uniprot
Match: A0A7S1G5B0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5B0_9STRA)

HSP 1 Score: 165 bits (417), Expect = 4.150e-49
Identity = 82/106 (77.36%), Postives = 96/106 (90.57%), Query Frame = 1 
Query:   16 QAGVVIVVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEGSLGKAGIICVEDLI 333
            +  + +VVRIRGI+GVSPKVRKILQLLRLRQINN+VFV++N AT  ML +VEPY+A+GYPNLKTVREL+YKRGFGKVNKQRIP++DNSVIEG LGK  IICVEDL+
Sbjct:   78 EGKLALVVRIRGIMGVSPKVRKILQLLRLRQINNAVFVRINKATRNMLTIVEPYIAWGYPNLKTVRELVYKRGFGKVNKQRIPLTDNSVIEGVLGKKDIICVEDLV 183
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BLAST of mRNA_Ecto-sp13_S_contig78802.19154.1 vs. uniprot
Match: A0A7S2WW50_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW50_9STRA)

HSP 1 Score: 164 bits (416), Expect = 9.260e-49
Identity = 86/100 (86.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:   34 VVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEGSLGKAGIICVEDLI 333
            VVRIRGIIGVSPKVRKILQLLRLRQI+N VFVKLN+AT+KMLRLVEPY+AYGYPNLK+ REL+ KRGFGKVNKQRI ISDNSVIE  LGK  IICVEDLI
Sbjct:  100 VVRIRGIIGVSPKVRKILQLLRLRQIHNGVFVKLNSATIKMLRLVEPYIAYGYPNLKSTRELVLKRGFGKVNKQRIAISDNSVIEQVLGKYDIICVEDLI 199
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BLAST of mRNA_Ecto-sp13_S_contig78802.19154.1 vs. uniprot
Match: A0A7S3V109_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V109_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.150e-48
Identity = 82/106 (77.36%), Postives = 96/106 (90.57%), Query Frame = 1 
Query:   16 QAGVVIVVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEGSLGKAGIICVEDLI 333
            ++ +++  RIRGIIG+SPKVRKILQLLRLRQI+N+VF+K N AT+ MLRLVEP+VAYGYP+LKTVREL+YKRGFGKVNKQRIPI+DNSVIE  LGK  IICVEDLI
Sbjct:   77 ESKLIVATRIRGIIGISPKVRKILQLLRLRQIHNTVFLKANKATINMLRLVEPFVAYGYPSLKTVRELVYKRGFGKVNKQRIPIADNSVIEEVLGKKDIICVEDLI 182
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BLAST of mRNA_Ecto-sp13_S_contig78802.19154.1 vs. uniprot
Match: A0A5A8DMV8_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DMV8_CAFRO)

HSP 1 Score: 164 bits (415), Expect = 4.810e-48
Identity = 81/106 (76.42%), Postives = 99/106 (93.40%), Query Frame = 1 
Query:   16 QAGVVIVVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEGSLGKAGIICVEDLI 333
            +A + +VVRIRGI+GVSPKVRKI+QLLRLRQINN+VFV+LN AT++ML++V PYVA+GYPN+KTVRE+IYKRGFGK+NKQRIP+SDNSV+E +LGK  IICVEDLI
Sbjct:  142 EAKLAVVVRIRGIMGVSPKVRKIMQLLRLRQINNAVFVRLNRATLQMLQMVVPYVAWGYPNVKTVREIIYKRGFGKINKQRIPLSDNSVVEEALGKHDIICVEDLI 247
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BLAST of mRNA_Ecto-sp13_S_contig78802.19154.1 vs. uniprot
Match: A0A7R9U1M8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1M8_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.760e-47
Identity = 81/100 (81.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:   34 VVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEGSLGKAGIICVEDLI 333
            V+RIRGIIGVSPKVRKILQLLRLRQI+N VF++L  AT KML LVEPY+AYGYPNLK+VRELIYKRGFGKVN+QRIP+S+NSVI G+LGK GI C+EDLI
Sbjct:   81 VIRIRGIIGVSPKVRKILQLLRLRQIHNGVFLRLTGATRKMLTLVEPYIAYGYPNLKSVRELIYKRGFGKVNRQRIPLSENSVIAGTLGKYGIDCIEDLI 180
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BLAST of mRNA_Ecto-sp13_S_contig78802.19154.1 vs. uniprot
Match: A0A6G0WJZ8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJZ8_9STRA)

HSP 1 Score: 161 bits (408), Expect = 3.130e-47
Identity = 83/106 (78.30%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:   16 QAGVVIVVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEGSLGKAGIICVEDLI 333
            +A V  VVRIRGIIGVSPKVRKIL+L RL QI N VFVKLN AT+ MLRLVEP+VAYGYPNLK+VRELIYKRGFGK+NKQRI ++DNS+IE  LGK GIIC+EDLI
Sbjct:  121 EAKVAFVVRIRGIIGVSPKVRKILKLFRLTQIQNGVFVKLNKATINMLRLVEPFVAYGYPNLKSVRELIYKRGFGKINKQRIALTDNSLIEKVLGKFGIICIEDLI 226
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BLAST of mRNA_Ecto-sp13_S_contig78802.19154.1 vs. uniprot
Match: B3SD15_TRIAD (Uncharacterized protein n=3 Tax=Placozoa TaxID=10226 RepID=B3SD15_TRIAD)

HSP 1 Score: 160 bits (404), Expect = 4.420e-47
Identity = 80/106 (75.47%), Postives = 97/106 (91.51%), Query Frame = 1 
Query:   16 QAGVVIVVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEGSLGKAGIICVEDLI 333
            +A +  VVRIRGI GVSPKVRKIL+LLRLRQI+N VFVKLN AT+ ML+LV+PY+A+GYPNLK+VRELIYKRGFGKV+K+RI +SDN++IE SLGK+GIIC+EDLI
Sbjct:   83 EAKLAFVVRIRGINGVSPKVRKILRLLRLRQIHNGVFVKLNKATINMLKLVDPYIAWGYPNLKSVRELIYKRGFGKVDKKRIALSDNAIIENSLGKSGIICMEDLI 188
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78802.19154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCF0_ECTSI6.720e-6298.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CG85_9STRA2.160e-5180.19Ribosomal protein L30, ferredoxin-like fold domain... [more]
A0A6V2QDA7_HETAK1.120e-5080.19Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S1G5B0_9STRA4.150e-4977.36Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2WW50_9STRA9.260e-4986.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3V109_9STRA1.150e-4877.36Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A5A8DMV8_CAFRO4.810e-4876.42Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A7R9U1M8_9STRA1.760e-4781.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6G0WJZ8_9STRA3.130e-4778.30Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
B3SD15_TRIAD4.420e-4775.47Uncharacterized protein n=3 Tax=Placozoa TaxID=102... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78802contigEcto-sp13_S_contig78802:21..625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score197.2
Seed ortholog evalue4e-48
Seed eggNOG ortholog2880.D8LCF0
Preferred nameRPL7
Model size333
KEGG koko:K02937,ko:K08819,ko:K19933
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categorysignal peptide
GOsGO:0000172,GO:0000184,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0001889,GO:0002165,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008033,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009791,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030312,GO:0030490,GO:0030684,GO:0030687,GO:0031090,GO:0031099,GO:0031100,GO:0031672,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035073,GO:0035210,GO:0042254,GO:0042273,GO:0042274,GO:0042788,GO:0042802,GO:0042803,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0046983,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061008,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097421,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1905267,GO:1990904
Exons2
EggNOG free text desc.maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsCOG1841@1,KOG3184@2759
EC2.7.11.22,2.7.11.23
Cds size333
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464058.9146354-CDS-Ecto-sp13_S_contig78802:20..2631681464058.9146354-CDS-Ecto-sp13_S_contig78802:20..263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78802 21..263 +
1681464058.94507-CDS-Ecto-sp13_S_contig78802:535..6251681464058.94507-CDS-Ecto-sp13_S_contig78802:535..625Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78802 536..625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78802.19154.1prot_Ecto-sp13_S_contig78802.19154.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78802 21..625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78802.19154.1

>prot_Ecto-sp13_S_contig78802.19154.1 ID=prot_Ecto-sp13_S_contig78802.19154.1|Name=mRNA_Ecto-sp13_S_contig78802.19154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
FFFFFQAGVVIVVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATV
KMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEGSLG
KAGIICVEDLI
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mRNA from alignment at Ecto-sp13_S_contig78802:21..625+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78802.19154.1 ID=mRNA_Ecto-sp13_S_contig78802.19154.1|Name=mRNA_Ecto-sp13_S_contig78802.19154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=605bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78802:21..625+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTTTTTTTTTTTTCAGGCCGGTGTGGTGATCGTCGTCCGCATCCGCGG
TATCATCGGCGTGTCCCCCAAGGTGCGCAAGATCCTGCAGCTCCTCCGCC
TGCGCCAGATCAACAACTCGGTCTTCGTCAAGCTCAACGCCGCGACCGTC
AAGATGCTGCGCCTCGTGGAGCCCTACGTGGCGTACGGGTACCCCAACCT
GAAGACGGTCCGCGAGCTTATCTACAAGCGCGGGTTCGGCAAGGTGCGTG
AAAGAGGGCAACCTCACGCGTGTTTTAAAAGATTTTTCACAACCACAGCA
AGGCTTAAATACCCCTTGAGGCGAACACTACAGCAGTCGAAGCATGAATC
ATACGACGTGTGTTGCCGTTACTGCGAGTGCCGTCTCCTAGTGATCAACT
CGATCCGGTTCGTCCTTTTCGTAGTACAGATTCAAGGCGCCCACCGATTT
AAGTGTGATGATGCATACGCTGGCCACCTCATGCTCAGGTGTCTCCCCCG
ATCTCTTTGCCGCAGGTGAACAAGCAGCGCATCCCCATCTCGGACAACTC
CGTGATCGAGGGCAGCCTCGGCAAGGCCGGCATCATCTGCGTGGAGGACC
TGATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78802:21..625+

>mRNA_Ecto-sp13_S_contig78802.19154.1 ID=mRNA_Ecto-sp13_S_contig78802.19154.1|Name=mRNA_Ecto-sp13_S_contig78802.19154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78802:21..625+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTTTTTTTTTTTTCAGGCCGGTGTGGTGATCGTCGTCCGCATCCGCGG
TATCATCGGCGTGTCCCCCAAGGTGCGCAAGATCCTGCAGCTCCTCCGCC
TGCGCCAGATCAACAACTCGGTCTTCGTCAAGCTCAACGCCGCGACCGTC
AAGATGCTGCGCCTCGTGGAGCCCTACGTGGCGTACGGGTACCCCAACCT
GAAGACGGTCCGCGAGCTTATCTACAAGCGCGGGTTCGGCAAGGTGAACA
AGCAGCGCATCCCCATCTCGGACAACTCCGTGATCGAGGGCAGCCTCGGC
AAGGCCGGCATCATCTGCGTGGAGGACCTGATC
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