mRNA_Ecto-sp13_S_contig78760.19150.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78760.19150.1
Unique NamemRNA_Ecto-sp13_S_contig78760.19150.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig78760.19150.1 vs. uniprot
Match: A0A6H5K984_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K984_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.720e-23
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 3 
Query:  159 WGKATPGKKGIRWDKVEEKIWKEVGDEEETLDTEGFGGFKKKVKEML 299
            WGKATPGKKGIRWDKV E++WKE+GDEEETLDTEGFGGFKKKVKEML
Sbjct:   25 WGKATPGKKGIRWDKVVERVWKEIGDEEETLDTEGFGGFKKKVKEML 71
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BLAST of mRNA_Ecto-sp13_S_contig78760.19150.1 vs. uniprot
Match: A0A6H5K8S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8S6_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.070e-22
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 3 
Query:  159 WGKATPGKKGIRWDKVEEKIWKEVGDEEETLDTEGFGGFKKKVKEML 299
            WGKATPGKKGIRWDKV E++WKE+GDEEETLDTEGFGGFKKKVKEML
Sbjct:   36 WGKATPGKKGIRWDKVVERVWKEIGDEEETLDTEGFGGFKKKVKEML 82
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BLAST of mRNA_Ecto-sp13_S_contig78760.19150.1 vs. uniprot
Match: A0A6H5KVE0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.460e-22
Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = 3 
Query:   54 LGRNKPHGVTQIVAQIGLKCPCPRATPRCCTTPHRWGKATPGKKGIRWDKVEEKIWKEVGDEEETLDTEGFGGFKKKVKEML 299
            LG +     T + A++G+     + T +       WGKATPGKKGIRWDKV E++WKE+GDEEETLDTEGFGGFKKKVKEML
Sbjct:  436 LGCSSTTSNTVLRAELGMYSLKQKETCKAMVDKAAWGKATPGKKGIRWDKVVERVWKEIGDEEETLDTEGFGGFKKKVKEML 517
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BLAST of mRNA_Ecto-sp13_S_contig78760.19150.1 vs. uniprot
Match: A0A6H5JWP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP1_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.950e-22
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 3 
Query:  159 WGKATPGKKGIRWDKVEEKIWKEVGDEEETLDTEGFGGFKKKVKEML 299
            WGKATPGKKGIRWDKV E++WKE+GDEEETLDTEGFGGFKKKVKEML
Sbjct:   60 WGKATPGKKGIRWDKVVERVWKEIGDEEETLDTEGFGGFKKKVKEML 106
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BLAST of mRNA_Ecto-sp13_S_contig78760.19150.1 vs. uniprot
Match: A0A6H5KZF0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF0_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.690e-22
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 3 
Query:  159 WGKATPGKKGIRWDKVEEKIWKEVGDEEETLDTEGFGGFKKKVKEML 299
            WGKATPGKKGIRWDKV E++WKE+GDEEETLDTEGFGGFKKKVKEML
Sbjct:  145 WGKATPGKKGIRWDKVVERVWKEIGDEEETLDTEGFGGFKKKVKEML 191
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BLAST of mRNA_Ecto-sp13_S_contig78760.19150.1 vs. uniprot
Match: A0A6H5KJB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB4_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 7.190e-22
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 3 
Query:  159 WGKATPGKKGIRWDKVEEKIWKEVGDEEETLDTEGFGGFKKKVK 290
            WGKATPGKKGIRWDKV E++WKE+GDEEETLDTEGFGGFKKKVK
Sbjct:   36 WGKATPGKKGIRWDKVVERVWKEIGDEEETLDTEGFGGFKKKVK 79
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BLAST of mRNA_Ecto-sp13_S_contig78760.19150.1 vs. uniprot
Match: A0A6H5JQG7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG7_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.010e-21
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 3 
Query:  159 WGKATPGKKGIRWDKVEEKIWKEVGDEEETLDTEGFGGFKKKVKEML 299
            WGKATPGKKGIRWDKV E++WKE+GDEEETLDTEGFGGFKKKVKEML
Sbjct:  314 WGKATPGKKGIRWDKVVERVWKEIGDEEETLDTEGFGGFKKKVKEML 360
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BLAST of mRNA_Ecto-sp13_S_contig78760.19150.1 vs. uniprot
Match: A0A6H5L5G8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5G8_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.100e-21
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 3 
Query:  159 WGKATPGKKGIRWDKVEEKIWKEVGDEEETLDTEGFGGFKKKVKEML 299
            WGKATPGKKGIRWDKV E++WKE+GDEEETLDTEGFGGFKKKVKEML
Sbjct:  352 WGKATPGKKGIRWDKVVERVWKEIGDEEETLDTEGFGGFKKKVKEML 398
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78760.19150.1 vs. uniprot
Match: A0A6H5K3U9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3U9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.870e-21
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 3 
Query:  159 WGKATPGKKGIRWDKVEEKIWKEVGDEEETLDTEGFGGFKKKVKEML 299
            WGKATPGKKGIRWDKV E++WKEVGDEEETLDTEGFGGFKKKVKEML
Sbjct:  509 WGKATPGKKGIRWDKVVERVWKEVGDEEETLDTEGFGGFKKKVKEML 555
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78760.19150.1 vs. uniprot
Match: A0A6H5KF79_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF79_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.690e-21
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 3 
Query:  159 WGKATPGKKGIRWDKVEEKIWKEVGDEEETLDTEGFGGFKKKVKEML 299
            WGKATPGKKGIRWDKV E++WKE+GDEEETLDTEGFGGFKKKVKEML
Sbjct:  323 WGKATPGKKGIRWDKVVERVWKEIGDEEETLDTEGFGGFKKKVKEML 369
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78760.19150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K984_9PHAE3.720e-2391.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8S6_9PHAE1.070e-2291.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVE0_9PHAE3.460e-2259.76Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWP1_9PHAE3.950e-2291.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZF0_9PHAE4.690e-2291.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KJB4_9PHAE7.190e-2290.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQG7_9PHAE2.010e-2191.49Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L5G8_9PHAE2.100e-2191.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K3U9_9PHAE2.870e-2193.62Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KF79_9PHAE3.690e-2191.49Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78760contigEcto-sp13_S_contig78760:326..624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score97.1
Seed ortholog evalue4.7e-18
Seed eggNOG ortholog2880.D7G873
Model size301
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.SET domain
EggNOG OGsCOG0553@1,COG2940@1,COG5076@1,KOG0383@2759,KOG0384@2759,KOG1075@1,KOG1075@2759,KOG1081@2759,KOG1474@2759
EC2.1.1.43,2.3.1.15,3.6.4.12
Cds size276
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464058.4483113-UTR-Ecto-sp13_S_contig78760:325..3481681464058.4483113-UTR-Ecto-sp13_S_contig78760:325..348Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig78760 326..348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464058.465669-CDS-Ecto-sp13_S_contig78760:348..6241681464058.465669-CDS-Ecto-sp13_S_contig78760:348..624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78760 349..624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78760.19150.1prot_Ecto-sp13_S_contig78760.19150.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78760 349..624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78760.19150.1

>prot_Ecto-sp13_S_contig78760.19150.1 ID=prot_Ecto-sp13_S_contig78760.19150.1|Name=mRNA_Ecto-sp13_S_contig78760.19150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MHGVYTLRYALGRNKPHGVTQIVAQIGLKCPCPRATPRCCTTPHRWGKAT
PGKKGIRWDKVEEKIWKEVGDEEETLDTEGFGGFKKKVKEML
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mRNA from alignment at Ecto-sp13_S_contig78760:326..624+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78760.19150.1 ID=mRNA_Ecto-sp13_S_contig78760.19150.1|Name=mRNA_Ecto-sp13_S_contig78760.19150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=299bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78760:326..624+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCGTGCCCCCTCCTGTTTTGTATGCATGGGGTTTACACTCTTCGATAC
GCTCTTGGGCGTAATAAACCACACGGAGTCACACAGATTGTCGCACAAAT
TGGACTCAAGTGCCCTTGCCCGCGAGCCACCCCTCGCTGCTGTACCACCC
CCCACCGATGGGGAAAAGCGACTCCAGGGAAGAAGGGAATCAGATGGGAC
AAGGTGGAAGAGAAGATTTGGAAGGAGGTAGGAGACGAGGAGGAGACGTT
GGACACAGAAGGGTTCGGGGGGTTCAAGAAGAAAGTCAAGGAGATGCTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78760:326..624+

>mRNA_Ecto-sp13_S_contig78760.19150.1 ID=mRNA_Ecto-sp13_S_contig78760.19150.1|Name=mRNA_Ecto-sp13_S_contig78760.19150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78760:326..624+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATGGGGTTTACACTCTTCGATACGCTCTTGGGCGTAATAAACCACA
CGGAGTCACACAGATTGTCGCACAAATTGGACTCAAGTGCCCTTGCCCGC
GAGCCACCCCTCGCTGCTGTACCACCCCCCACCGATGGGGAAAAGCGACT
CCAGGGAAGAAGGGAATCAGATGGGACAAGGTGGAAGAGAAGATTTGGAA
GGAGGTAGGAGACGAGGAGGAGACGTTGGACACAGAAGGGTTCGGGGGGT
TCAAGAAGAAAGTCAAGGAGATGCTA
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