mRNA_Ecto-sp13_S_contig7873.19147.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7873.19147.1 vs. uniprot
Match: D7FZA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA3_ECTSI) HSP 1 Score: 586 bits (1510), Expect = 1.650e-199 Identity = 298/319 (93.42%), Postives = 306/319 (95.92%), Query Frame = 1
Query: 325 MFDRRPATLGRDVGRMVRSGQDMLSPEIVDLMVSSSTRSTVGSPPPLADTAGVDVFAVIAKAYHRLRRHDLTLQLCEAFEESTGEPLVPSTPQGLVWLLGAIRRRRTTAPHSGRQPGKRDREGEGERGVKEVLRLYEEGGKDVPVAAYTAAVEALAGCHCTVALEMAQEARSKLGNSAEGLGEVYAAVMKQCLEQQEPDVMRDVLEERIQAGGTMAPDARAYELALGCLGKARRMSEALELFGEMLESGVQPNAIAINHMLSGCARDAEKFWRHANTIFEGMEQRWGVAPNVYHYTSLVTCLLKAGQWSEAIAMTDKME 1281
MFDRRPATLGRDVGRMVRSGQD LSPEIVDLMVS+STRSTVGSPP LADTAGVDVFAVIAKAYHRLRRHDLTLQLCEAFEESTGEPLVPSTPQGLVWLLGA+RRR TTAP SGR+PG+ DREGEG R VKEVLR YEEGGKDVPV AY AAVEALAGCHCTVALEMAQEARSKLG+SAEGL EVY AVMKQC+EQQEPDVMRDVLEERIQAGGTMAPDARAYELALGCLGKARRMSEALELFGEMLESGVQPNAIAINHMLSGCARDA+KFWRHANTIFEGM QRWGVAPNVYHYTSLVTCLLKAGQWSEAIA+TDKME
Sbjct: 1 MFDRRPATLGRDVGRMVRSGQDFLSPEIVDLMVSASTRSTVGSPPLLADTAGVDVFAVIAKAYHRLRRHDLTLQLCEAFEESTGEPLVPSTPQGLVWLLGAMRRRSTTAPRSGRRPGRHDREGEGGREVKEVLRRYEEGGKDVPVVAYKAAVEALAGCHCTVALEMAQEARSKLGDSAEGLCEVYVAVMKQCIEQQEPDVMRDVLEERIQAGGTMAPDARAYELALGCLGKARRMSEALELFGEMLESGVQPNAIAINHMLSGCARDADKFWRHANTIFEGMAQRWGVAPNVYHYTSLVTCLLKAGQWSEAIALTDKME 319
BLAST of mRNA_Ecto-sp13_S_contig7873.19147.1 vs. uniprot
Match: A0A6D2I7U4_9BRAS (DYW_deaminase domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I7U4_9BRAS) HSP 1 Score: 67.0 bits (162), Expect = 3.280e-8 Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = 1
Query: 994 LALGCLGKARRMSEALELFGEMLESGVQPNAIAINHMLSGCARDAEKFWRHANTIFEGMEQRWGVAPNVYHYTSLVTCLLKAGQWSEAIAMTDKM 1278
+ LG GKA EALELF EM+ESGV+PNA+A +L+ C+ + A + F+ M + +GV + HY LV L + GQ EA M +KM
Sbjct: 383 VGLGMHGKA---DEALELFKEMVESGVKPNAVAFVGLLNACSHVG--YVEEARSYFDLMVREYGVEREIEHYGCLVDALCRTGQLQEAKTMIEKM 472
BLAST of mRNA_Ecto-sp13_S_contig7873.19147.1 vs. uniprot
Match: A0A7N0VJB4_KALFE (DYW_deaminase domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0VJB4_KALFE) HSP 1 Score: 64.7 bits (156), Expect = 1.760e-7 Identity = 45/146 (30.82%), Postives = 69/146 (47.26%), Query Frame = 1
Query: 871 EVYAAVMKQCLEQQEPDVMRDVLEERIQAGGT----------MAPDARAYELALGCLGKARRMSEALELFGEMLESGVQPNAIAINHMLSGCARDAEKFWRHANTIFEGMEQRWGVAPNVYHYTSLVTCLLKAGQWSEAIAMTDKM 1278
EV+A ++K + P VM VL+ + G D ++ LG + RM E +ELF EM+ SGV P+ + +LSGC+ +F+ ME +G++P HY LV L +AG+ EAI++ M
Sbjct: 298 EVHAQILKSSVPPDVP-VMNSVLDMYAKCGAMEYCIKVFDNMQIKDLTSWNTVLGGYAMSGRMLEGVELFHEMVSSGVNPDDVTFITLLSGCSHSG--LTDIGQQLFDAMEPEYGISPVQEHYACLVDILGRAGRIEEAISVVKTM 440
BLAST of mRNA_Ecto-sp13_S_contig7873.19147.1 vs. uniprot
Match: A0A1J3E2L4_NOCCA (Pentatricopeptide repeat-containing protein (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3E2L4_NOCCA) HSP 1 Score: 62.8 bits (151), Expect = 6.690e-7 Identity = 33/106 (31.13%), Postives = 56/106 (52.83%), Query Frame = 1
Query: 961 GTMAPDARAYELALGCLGKARRMSEALELFGEMLESGVQPNAIAINHMLSGCARDAEKFWRHANTIFEGMEQRWGVAPNVYHYTSLVTCLLKAGQWSEAIAMTDKM 1278
G + D ++ L C + E + LFG M+ESGV+P+ I + SGC+ + ++FE M+ + V+P + HY LV L +AG+ EA+ + ++M
Sbjct: 360 GMSSKDLTSWNTMLNCYAINGDIEEEINLFGSMIESGVEPDGITFVALFSGCSDTG--LTEYGLSLFERMKSEFRVSPALEHYACLVDILGRAGKIEEAVKVVERM 463
BLAST of mRNA_Ecto-sp13_S_contig7873.19147.1 vs. uniprot
Match: A0A8J5LB63_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LB63_ZINOF) HSP 1 Score: 61.6 bits (148), Expect = 1.670e-6 Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 1033 EALELFGEMLESGVQPNAIAINHMLSGCARDAEKFWRHANTIFEGMEQRWGVAPNVYHYTSLVTCLLKAGQWSEAIAMTDKM 1278
EALELF +M + G++PN+I +LS C+ R +F ME ++G+ PNV HYT LV L ++G+ EA+ + + M
Sbjct: 471 EALELFYQMQKEGIRPNSITFLILLSACSHSG--LVREGCALFNCMENKFGIEPNVSHYTCLVDLLGRSGKLHEALDVINNM 550
BLAST of mRNA_Ecto-sp13_S_contig7873.19147.1 vs. uniprot
Match: A0A1S2XD25_CICAR (pentatricopeptide repeat-containing protein At1g03540-like n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2XD25_CICAR) HSP 1 Score: 60.5 bits (145), Expect = 1.800e-6 Identity = 32/98 (32.65%), Postives = 48/98 (48.98%), Query Frame = 1
Query: 988 YELALGCLGKARRMSEALELFGEMLESGVQPNAIAINHMLSGCARDAEKFWRHANTIFEGMEQRWGVAPNVYHYTSLVTCLLKAGQWSEAIAMTDKME 1281
+ + C G R E E+FG M+E G +P+ + +LS C+ F FE ME R+GV P + HYT +V L + G EA + +M+
Sbjct: 178 WSTMMSCYGMHGRFEEVFEMFGRMVEEGKKPDGVTFTAVLSACSHGG--FVEKGREYFEMMEVRFGVKPELRHYTCMVDMLGRVGLVEEAEKLILRMD 273
BLAST of mRNA_Ecto-sp13_S_contig7873.19147.1 vs. uniprot
Match: A0A2K1X8B2_POPTR (Uncharacterized protein n=3 Tax=Populus TaxID=3689 RepID=A0A2K1X8B2_POPTR) HSP 1 Score: 60.8 bits (146), Expect = 2.550e-6 Identity = 34/83 (40.96%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 1030 SEALELFGEMLESGVQPNAIAINHMLSGCARDAEKFWRHANTIFEGMEQRWGVAPNVYHYTSLVTCLLKAGQWSEAIAMTDKM 1278
+ ALE+F +MLESGV PN + +LSGC+ AN +F GM Q +G P + HY +V L +AG EA + D M
Sbjct: 318 NHALEVFYDMLESGVIPNDVTFLLVLSGCSHSG--LLVEANKLFNGMIQCYGFEPKIEHYGCMVDLLCRAGLLEEAKELIDNM 398
BLAST of mRNA_Ecto-sp13_S_contig7873.19147.1 vs. uniprot
Match: A0A6A5MTT2_LUPAL (Putative tetratricopeptide-like helical domain, DYW domain-containing protein n=2 Tax=Lupinus TaxID=3869 RepID=A0A6A5MTT2_LUPAL) HSP 1 Score: 60.8 bits (146), Expect = 2.650e-6 Identity = 33/94 (35.11%), Postives = 48/94 (51.06%), Query Frame = 1
Query: 976 DARAYELALGCLGKARRMSEALELFGEMLESGVQPNAIAINHMLSGCARDAEKFWRHANTIFEGMEQRWGVAPNVYHYTSLVTCLLKAGQWSEA 1257
D A+ +G L E LELFGEM+ GV+PNA+ +LS C R N F+ M + +G++P + HY +V +AGQ +A
Sbjct: 255 DVVAWSAMIGALAMHGCSEECLELFGEMINDGVRPNAVTCLGVLSACVHGG--LVREGNEYFKRMMKDYGISPLIQHYGCMVDLYSRAGQIEDA 346
BLAST of mRNA_Ecto-sp13_S_contig7873.19147.1 vs. uniprot
Match: A0A2G5DBK2_AQUCA (Uncharacterized protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5DBK2_AQUCA) HSP 1 Score: 60.5 bits (145), Expect = 3.720e-6 Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 1033 EALELFGEMLESGVQPNAIAINHMLSGCARDAEKFWRHANTIFEGMEQRWGVAPNVYHYTSLVTCLLKAGQWSEAIAMTDKM 1278
EAL+LF M++ GV+PN+I I +LS C+ F A +FE M R+G+ P++ HYT +V L ++G+ +A M + M
Sbjct: 420 EALQLFNCMVDEGVEPNSITILSILSACSHSG--FVTEACKVFEYMTGRFGIKPDLNHYTCMVDLLGRSGELCKAREMIENM 499
BLAST of mRNA_Ecto-sp13_S_contig7873.19147.1 vs. uniprot
Match: UPI00109FED9A (pentatricopeptide repeat-containing protein At3g26782, mitochondrial isoform X3 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI00109FED9A) HSP 1 Score: 60.1 bits (144), Expect = 4.120e-6 Identity = 34/95 (35.79%), Postives = 53/95 (55.79%), Query Frame = 1
Query: 997 ALGCLGKARRMSEALELFGEMLESGVQPNAIAINHMLSGCARDAEKFWRHANTIFEGMEQRWGVAPNVYHYTSLVTCLLKAGQWSEAIAMTDKME 1281
A G G+ R EAL+LF +ML+SG++PN I +LS C+ F ME+ + V +V HYT +V L +AG+ E + +T++M+
Sbjct: 178 AYGVHGRGR---EALQLFPQMLQSGIRPNRITFVSILSACSHSG--LIEEGRQFFNSMERDYFVESDVKHYTCMVDLLGRAGRLDEVLELTERMK 267 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7873.19147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7873.19147.1 >prot_Ecto-sp13_S_contig7873.19147.1 ID=prot_Ecto-sp13_S_contig7873.19147.1|Name=mRNA_Ecto-sp13_S_contig7873.19147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=427bp MCPCVIELTCDFHCSLRCLAQAMIHYAARRAYTTSLRQGGGGLNRWRAPGback to top mRNA from alignment at Ecto-sp13_S_contig7873:1965..7207+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7873.19147.1 ID=mRNA_Ecto-sp13_S_contig7873.19147.1|Name=mRNA_Ecto-sp13_S_contig7873.19147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7873:1965..7207+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7873:1965..7207+ >mRNA_Ecto-sp13_S_contig7873.19147.1 ID=mRNA_Ecto-sp13_S_contig7873.19147.1|Name=mRNA_Ecto-sp13_S_contig7873.19147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1281bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7873:1965..7207+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |