mRNA_Ecto-sp13_S_contig7871.19144.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7871.19144.1
Unique NamemRNA_Ecto-sp13_S_contig7871.19144.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7871.19144.1 vs. uniprot
Match: A0A6H5KLK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLK1_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 9.820e-51
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 IRCVCAQEHKDMPYAFNEPGLQSEVAPYTAEDFWAEMGDPKRGAHHMGPIALPVLPPKPSVDERVVLIAHSAGGWMSRIYLSEA 252
            IRCVCAQEHKDMPYAFNEPGLQSEVAPYTAEDFWAEMGDPKRGAHHMGPIALPVLPPKPS+DERV+LIAHSAGGWMSRIYLSEA
Sbjct:  242 IRCVCAQEHKDMPYAFNEPGLQSEVAPYTAEDFWAEMGDPKRGAHHMGPIALPVLPPKPSIDERVILIAHSAGGWMSRIYLSEA 325
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7871.19144.1 vs. uniprot
Match: D7FRU2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRU2_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 7.040e-50
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 1 
Query:    1 IRCVCAQEHKDMPYAFNEPGLQSEVAPYTAEDFWAEMGDPKRGAHHMGPIALPVLPPKPSVDERVVLIAHSAGGWMSRIYLSEA 252
            IRCVCAQEHKDMPYAFNEPGLQSEVAPYTAEDFWAEMGDPKRGAHHMGPI LPVLP KPSVDERVVLIAHSAGGWMSRIYLSEA
Sbjct:   96 IRCVCAQEHKDMPYAFNEPGLQSEVAPYTAEDFWAEMGDPKRGAHHMGPIDLPVLPSKPSVDERVVLIAHSAGGWMSRIYLSEA 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7871.19144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLK1_9PHAE9.820e-5197.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRU2_ECTSI7.040e-5097.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7871contigEcto-sp13_S_contig7871:3345..4696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score152.5
Seed ortholog evalue7.7e-35
Seed eggNOG ortholog2880.D7FRU2
Model size657
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.PGAP1-like protein
EggNOG OGs2RZXS@2759,COG1075@1
Ec32 ortholog descriptionGPI inositol-deacylase PGAP1-like
Ec32 orthologEc-25_000390.1
Cds size225
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464057.9871633-UTR-Ecto-sp13_S_contig7871:3344..33771681464057.9871633-UTR-Ecto-sp13_S_contig7871:3344..3377Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7871 3345..3377 +
1681464058.0199916-UTR-Ecto-sp13_S_contig7871:4297..46961681464058.0199916-UTR-Ecto-sp13_S_contig7871:4297..4696Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7871 4298..4696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464057.9998155-CDS-Ecto-sp13_S_contig7871:3377..34671681464057.9998155-CDS-Ecto-sp13_S_contig7871:3377..3467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7871 3378..3467 +
1681464058.009815-CDS-Ecto-sp13_S_contig7871:4162..42971681464058.009815-CDS-Ecto-sp13_S_contig7871:4162..4297Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7871 4163..4297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7871.19144.1prot_Ecto-sp13_S_contig7871.19144.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7871 3378..4297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7871.19144.1

>prot_Ecto-sp13_S_contig7871.19144.1 ID=prot_Ecto-sp13_S_contig7871.19144.1|Name=mRNA_Ecto-sp13_S_contig7871.19144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
MPYAFNEPGLQSEVAPYTAEDFWAEMGDPKRGAHHMGPIALPVLPPKPSV
DERVVLIAHSAGGWMSRIYLSEAW*
back to top

mRNA from alignment at Ecto-sp13_S_contig7871:3345..4696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7871.19144.1 ID=mRNA_Ecto-sp13_S_contig7871.19144.1|Name=mRNA_Ecto-sp13_S_contig7871.19144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1352bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7871:3345..4696+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAGGTGTGTCTGTGCCCAGGAGCACAAAGACATGCCGTACGCGTTCAA
CGAGCCCGGCCTGCAGAGCGAGGTCGCGCCGTACACGGCCGAGGATTTCT
GGGCGGAGATGGGCGATCCCAAGGTGCCTCTTTGTGTGTCAAAGTACCAT
TTATTGTGATCATGTTTTATGAAGAGTGCGTCCATCTCCATCTTACCCGG
CAGAAGTGCTGGGACAAGTGAGCGCTGATTCATTGTGATGGACAAAAATA
AATCTCAACGCGACCAGGTGTGTCATGTGCTCCATTGTTTGGAGCAAGGC
CATGATGATAGTAAGAGGGAGCGCGAAAAAAAGAAGGAAGCAAGCCTACC
CATCTGTAGTTACCAGTGAGAGCGCACTCCCCGTACCCTCGTGTTTTCTG
GTACCAGGTGCTTGGTAGTTGTCATTTTAGTTAGTTCAGTGAAAAAGAAG
AACAAAACGTTGTTGTGTTGCGTTTGGGAAAGACACATTTCCCCGCGTCC
GTTTATAGCACCCGCTGTGGAATCTACCAACGTTGTCGCACATCACCTGT
CTTTCTTTATGCCCCCTTGGCCCCCTGTCACATTTGAATGGGTCTCTCAA
GACTTGTTTTTTATGACACACCTGTCCAAAAGAAAAACAGAGTTCGGTAT
TGCGCGTCTTCAAGAGCCGAATATTCAGTGCCATGTACCGCGAACGCTCA
CTCGGTTCAAGGGCATCCCATGTACCACGATTTGTTTTATTCGGAATGTT
GAGCCGGTTCAAATGCATCCCGTGTACCACGATTGTGTGTCGTCCGGCTC
GATCCTGTCTCCTTTCAGCGTGGGGCACATCACATGGGACCCATCGCCCT
TCCCGTTCTGCCGCCGAAGCCATCGGTAGACGAGCGCGTGGTCTTAATCG
CGCACTCCGCCGGAGGCTGGATGTCTAGAATATACCTCTCCGAGGCCTGG
TAGGGTATGTACTGTAGGGTAGACCGCAATACATAGCAGACCCGCAAACA
CATACCGTAGGTGACGCTAGGTACCACACTCCCTGCATCGATTTTTGAAC
ATGTACAAATCACACGACGCGTTGTCGGAAAGTTCTGGACGAGACGGTTC
CAACGCCGCCGAAACCGCCACCCTCTGGCAGTATTAAGCTTTGAGATTCG
ATACAGGGAGTGTATAATCTAATTTAGTGTCACCTGCGGTACAAACACTT
ACCGTTGCCGATTTTTTGCTACTGCTGTGGTTGTCGTTGCTACGCCTTGT
TCCCTCGCCTGCGCCACCGCAAGATGACTCTGCTGCCATAGGCACCGCAA
GGTCTGCCTATAGGTTACACCCATTACTTGCTGTCCTTGAGTGACAAAAC
AG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7871:3345..4696+

>mRNA_Ecto-sp13_S_contig7871.19144.1 ID=mRNA_Ecto-sp13_S_contig7871.19144.1|Name=mRNA_Ecto-sp13_S_contig7871.19144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7871:3345..4696+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTACGCGTTCAACGAGCCCGGCCTGCAGAGCGAGGTCGCGCCGTA
CACGGCCGAGGATTTCTGGGCGGAGATGGGCGATCCCAAGCGTGGGGCAC
ATCACATGGGACCCATCGCCCTTCCCGTTCTGCCGCCGAAGCCATCGGTA
GACGAGCGCGTGGTCTTAATCGCGCACTCCGCCGGAGGCTGGATGTCTAG
AATATACCTCTCCGAGGCCTGGTAG
back to top