prot_Ecto-sp13_S_contig787.19141.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig787.19141.1
Unique Nameprot_Ecto-sp13_S_contig787.19141.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length117
Homology
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BLAST of mRNA_Ecto-sp13_S_contig787.19141.1 vs. uniprot
Match: D8LCF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF4_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 6.280e-9
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 0 
Query:   89 LARIPRLQFFLGCALYVLHNACAWLYVRG 117
            +++IPRLQFFLGCALYVLHNACAWLYVRG
Sbjct:   34 ISQIPRLQFFLGCALYVLHNACAWLYVRG 62
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BLAST of mRNA_Ecto-sp13_S_contig787.19141.1 vs. uniprot
Match: A0A6H5KWZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWZ4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.050e-8
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 0 
Query:   89 LARIPRLQFFLGCALYVLHNACAWLYVRG 117
            +++IPRLQFFLGC LYVLHNACAWLYVRG
Sbjct:   45 ISQIPRLQFFLGCTLYVLHNACAWLYVRG 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig787.19141.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCF4_ECTSI6.280e-989.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWZ4_9PHAE2.050e-886.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021980Transcription factor homeodomain, male germ-cellPFAMPF12129Phtf-FEM1B_bdgcoord: 27..115
e-value: 1.3E-8
score: 34.8
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 69..89
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 90..94
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 116..117
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..68
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 95..115
NoneNo IPR availableTMHMMTMhelixcoord: 70..89
NoneNo IPR availableTMHMMTMhelixcoord: 93..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig787contigEcto-sp13_S_contig787:8998..13697 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig787.19141.1mRNA_Ecto-sp13_S_contig787.19141.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig787 8998..13698 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig787.19141.1 ID=prot_Ecto-sp13_S_contig787.19141.1|Name=mRNA_Ecto-sp13_S_contig787.19141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
TLPPHTCTTAWANMFTTRRPSQQQQQQQQQYKDQQDEHKLQDETPTEYFD
LNVLKGAVSFNTKPFKHRALVWIGFKKVLLFPFCWSWWLARIPRLQFFLG
CALYVLHNACAWLYVRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021980TF_homeodomain_male