mRNA_Ecto-sp13_S_contig787.19141.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig787.19141.1
Unique NamemRNA_Ecto-sp13_S_contig787.19141.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig787.19141.1 vs. uniprot
Match: D8LCF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF4_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 6.280e-9
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 1 
Query:  265 LARIPRLQFFLGCALYVLHNACAWLYVRG 351
            +++IPRLQFFLGCALYVLHNACAWLYVRG
Sbjct:   34 ISQIPRLQFFLGCALYVLHNACAWLYVRG 62
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BLAST of mRNA_Ecto-sp13_S_contig787.19141.1 vs. uniprot
Match: A0A6H5KWZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWZ4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.050e-8
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:  265 LARIPRLQFFLGCALYVLHNACAWLYVRG 351
            +++IPRLQFFLGC LYVLHNACAWLYVRG
Sbjct:   45 ISQIPRLQFFLGCTLYVLHNACAWLYVRG 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig787.19141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCF4_ECTSI6.280e-989.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWZ4_9PHAE2.050e-886.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig787contigEcto-sp13_S_contig787:8998..13698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score62.4
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog2880.D8LCF4
Preferred namePHTF1
Model size353
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005794,GO:0005801,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0012505,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
Exons3
EggNOG free text desc.transcription, DNA-templated
EggNOG OGs28I6J@1,2QQGQ@2759
Cds size351
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464057.7279494-CDS-Ecto-sp13_S_contig787:8997..91641681464057.7279494-CDS-Ecto-sp13_S_contig787:8997..9164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig787 8998..9164 +
1681464057.739912-CDS-Ecto-sp13_S_contig787:9587..96931681464057.739912-CDS-Ecto-sp13_S_contig787:9587..9693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig787 9588..9693 +
1681464057.7574728-CDS-Ecto-sp13_S_contig787:13619..136971681464057.7574728-CDS-Ecto-sp13_S_contig787:13619..13697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig787 13620..13697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig787.19141.1prot_Ecto-sp13_S_contig787.19141.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig787 8998..13697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig787.19141.1

>prot_Ecto-sp13_S_contig787.19141.1 ID=prot_Ecto-sp13_S_contig787.19141.1|Name=mRNA_Ecto-sp13_S_contig787.19141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
TLPPHTCTTAWANMFTTRRPSQQQQQQQQQYKDQQDEHKLQDETPTEYFD
LNVLKGAVSFNTKPFKHRALVWIGFKKVLLFPFCWSWWLARIPRLQFFLG
CALYVLHNACAWLYVRG
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mRNA from alignment at Ecto-sp13_S_contig787:8998..13698+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig787.19141.1 ID=mRNA_Ecto-sp13_S_contig787.19141.1|Name=mRNA_Ecto-sp13_S_contig787.19141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4701bp|location=Sequence derived from alignment at Ecto-sp13_S_contig787:8998..13698+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACACTACCCCCACACACATGTACAACTGCCTGGGCTAACATGTTCACGAC
GCGGCGCCCTTCGCAGCAGCAGCAGCAGCAGCAACAGCAGTATAAAGACC
AACAGGACGAGCATAAGCTTCAGGATGAAACCCCCACGGAGTACTTCGAT
TTGAACGTCCTGAAAGGGTAAGCTATAGCTAGTAAGCTAGCCATGACGAA
ATTTACTGAATGTATCCGTTAGGGTTGGGCACCCCTTGAGACCCTTGTGT
AGGTCCAACCAAACCAACGACCATCGACGAACAGCTCTCACGGCTGATGT
ATCAGCTGGCGTGCCCGTATCTATGTCGCGAGCGGGTACGGAGGCGGCAG
TCTTTGTGCGCACGTGGGAGCCCTAGAGCAGCAGCAGCAGTGCCTTGTGG
CCTACCAATGCCTAGGATTTGAAAGTTTTCAACATCTGGGCAAGCTGCTG
CTGGTGTCATGCAGACCCAGCACCGTTCCTAGATTTTATGTATTAATAAC
CAGTGCCGTGTGAGTGTTGTTGGTGAACTCCCTCTTTTCTGTTGCACCCC
GACAAACATGAAATCACCCGCCTCATTGCATGAAACACAGCGCGGTCTCG
TTCAACACCAAGCCGTTCAAGCACCGGGCGCTGGTTTGGATCGGCTTCAA
GAAGGTCTTGCTATTCCCATTCTGCTGGAGCTGGTGGTTGGCTCGGGTAA
GTGAAGGTCTGCTGTATACGTCGTGGGACGAAGTCTGTTGTGGCGTAATG
TAGCACGCCTGTTTATCCCCCCCTTCCATTACCGCATACGATCGGACAGA
ATCCAGCAGGGCCGGAATTCGTCGCAACAGAGCAGCACCGCACAGGCAGG
TGCAGTGTTTATCATTGTGAAGTTTCTGCACCGCCATAACAGCTATTACT
GCTGTTGGAGTGCTGGTGCGCATGTATCATGCCGAACACTACGATGAAGA
AAAATTGGCGACCACGGATCGTGTTCGCGCATGCAAAACGCACCGTCGCC
CTCGATCACCGCAACCGGGAGAGATTGTTTCTGGTTTCTACAAAGTGTAG
TGCAGGTCAACACCGAGTAGCCCCCCGACTGCAGTATACAACATACACCA
GCGACGGCATCCGCGACGCCCTCGCTTGCGTTACTACGCGTCGCGTTGTT
CGCACACCTCGGCCGAAAAAAACTCTGAGCGGGTTATTATTTTAGTCAAC
ATATTTCGTTGAACACAAAATCAGAGAGAGATCGCATTCGAGACAGCAGA
CGAGGCGGACAGATGGCACCAGGATGCGAACCATCTTTTTTTTTATTCAT
TTTATTTTTTGTGTATCCGCGCACATTTTAAGAGTCTGTCCGTCCGACAG
GTGGCGCATCTCTCCACGCCGGAAATACCGCAAAACAACTAGAATACAAA
TGCATACATCAGTCGCATCGTTTCGCAGCAGAAGTGGGCCCGTCAACAAC
GCCGGTTTGAATTGCGCCGGGTACCTGGCTCCGTGCGGTGAAAATGCTGG
GCGCAGACCGAATCATCGTGTACTTTGTATAGCGCCGGTCCCTCTGTTTG
GTCCCGGTCGATTGGCCGGGCGCGTACCGGCGTTGTTGAGGGGGCCCACT
GTGTAATAGATGCGTAATGCTGCTGTAGCTCTTTCAAGGCACCCCGGCAT
GATGTCTTCGATACGGGAGATGCTGTCAGCGTCCTTGCTGGTGGCACGGC
GGTGTTGTATGCACGCATCCCAGTTGATATTTCCCCCACCGGTGTCATCT
CGCCGCCCCCAAGTATTGGTACCGGTGAACGTAAGGCTTAATATTGTAGG
CAAACCTACACTGCTTTTGTTGTTGTTGTTGTTGTGTAGTTGTCTTCGCA
TCTACAACCGTTCCGGTCTCCGCTCGTACCTTCTAGTCCAATGTCCATAC
CGGTCCCACTGACGCGGACGCCTTCCGTGGTCACACGCAGTACGAAAAAA
CGAAAAAATGACGAGCTTTCCGTCTGGGGTACCAATACACCGACTTGTTC
TACCGCAGTCGTTTCGAGGCACGCAGCAGCTTAGACTAAGGAGTTTTTCT
TGCATATGGTGGGGGTAGGTTGCGACCTGTATCTCGCAACTTATTTCGCG
ATGAAAAGAAAACGTCGTGAGATTTCCGCGTGAACCGCGACGATACATAT
GTACCACATCCGTACGGGGTGGCGCTCTTCTGACACCGTCAGCACGTGTG
AATCGTAAGGGTGTGCCCATGCATATCTCTTTCGGCAGGTACAAGAACAG
CTCAATGTTGGGTCTGGAAGTCGGTGAATTCGTACCACCGGGATGGATGT
GTCAAAGTCTTTGGTGTTTGTGTTGGGCAGATCCTGGTGGGTACTGGAGC
AAGAAAGGTATTTGAGTTTGCTTGGGGCTGGTCTTGACCGGAATTGTGCA
CCCAGGCTCGACGCGCAGACCAAGAGTTAGAGCGGAACCAGCGATCCACA
GAACTCTGGGAGTGATATTGTAGCGGGCCCTTAACCGCTTTTTACATTGG
ACAACCACAGCTAGAGTTGGAGGTGAGTGTGCGGCACAACCCCAAGTAGA
CTGTGATACAGGTTGCGCGGATGTACAGTTGTATGGAGATGGGGCTACCG
CCAGCGAGCACTTTGAAAGCTGCGCGGGCCGAGAAAAACCAAAAGCGCAA
ACTCGGAGGGTGGGGTGCAAAACCACAGAAAACGGGGGACACATGCTTTG
CGATTTTACTCGTCCTTGCGGCACTAGCTGCTCCTACTTCTCGCGCTGCT
GTTGGTCAGCATATTACATTACGTGAGAGGGCATGCTAATTTTTTGCTCC
GGGTTGGCTGTGAAGCCCGTTGTGTGTTGTGTGCGAGTGTGAAGACTCTC
CAAAAGTGCTGCATAGCAACGTGGCAAAGAAAGTGGCAACTGCAGCAGTC
GTGCAGCCTTCCGAAAATATTCGCAATAACGGAAGACTATCAGTTTATAA
GTAGTCGAAGTGGGAGCATATGATACAACCACAGCATAATCAGTCAAGGG
CATGTGTTCAAGTATATTCAGTCAGTGGTCGGAAGCCTGCCACAGTCTTT
GTCATCTTACCAAGAGTAGACCGACTTTTGGGAGCTCCGGGTTGTACGGT
TCGCCTAAATCAGGGCTTGATTTTTTGTTTTTCCCAATATGCATATGACC
CAACGAATCCATCTGCAAGGAAGGAGTCATAAGATAGATTAGCAATGAAT
CCATAGCGTCAGCGAAGGCTACCTCTATTTCCACGATTTCCCGAGCAGCA
CACAGCGATATCTCGCCTGTGGTTTACACGGGCTCCACAAGACCTTTTGT
TAGCCATCTTGTGCATCTCTCGGTATGTTATCCTGGGAAGTGTAGAAGGA
AGGTGTTGGATAGTTCGTTTGTCGGGTGTGCTGGTGGTGGCACCCTGAAG
ATTAGCACAGCACACAAGCGGTAACACATCTTACTCCGTGTTTTCCGCGC
GTTTATCCCGGGCTGGCAGCGCGTGGTTGTGGCGTGACGGTGTCAGCATG
TATGCGTAGGCGAGCTTCAGCTGAGAGATTGGAATAGATGCCGCCCTGTG
TCCGTCATCACGTGCACCAGCAGTTAAAAGCAGAGCAGCACAGTCGCTAC
AGCTTTTCATACCCGTCCTTCTTGAAGTTCTGTCGGAGATGTCTACGTGC
GCAACGGCTGGATCCGAAACGCCGGCTACTCCGCAAACCAAGAGAGGAGA
AGGGGGCAGCTAAAACACAACGACCGCTGTCTTCTCCTCCTCCCGTCTTT
TTGCACGTACACGGTTTGTTGGCTCTTGCGGGGGCAGCCGATATTTTCCG
GCGGCGGCGTGTTCGAAATAGAATTTTCCCACCTGTGTGTGTGTGTGTGT
TTGTGTGAAGCATGAAGGATAACAAGTGTGACAGTCGGGTCACATTGATG
AAAAAAAAAAAAAAAGGAAGGGTTGATTACGTCGTTTTCGCATGCATATT
CAAATGTTGGACCGCTGTTCTGACCCGGAGTTATCTTGCAGGAAAACTGC
AGCTGATTAAACAACAGCAGTGCGGTCTTGCCATCATTTTCACCCAAGCA
AACCGGGAGTTCTTGTGGATTTTTCCGTTCGAAATCTTGCTCTGGGGGCG
CAAGTCCAATTAAGACCGGCCCTTCAGGCTACGCACTGAACGATCAGTGC
CTTTACCGGCCACGCCTTGGACAGAAACAGGCCTGGTAAAGTTAACCTTC
TTTTTATCTGCTGCCACTGTGACAGGGTGGTCGTAACCGCTACTGCTTTG
TCTAAGCCCCGACCCAGCATGCCCTGACCTCTGCACCAAGCAGATAGACG
CCTAGCCGCCCACCTCTATCTCCATCTTTATCCCTCTCTGACGTGTCCTC
GATATTGTGCAAGCTTCATCCTTCGTGATTTTTTTTTTGAAGAGGACAAT
ATGATGGAACTAAGTGACACAGCGTTCATATCTTCAAGAATGGCATCCCA
TTCACCTTACTGCTTTCGTGATGTATACTCATGGTGGCCACCGTCCTGTT
TTCAACGGCCGCCATGTCCAATCCTTTTCTGCCTGCACCTCCTGCGCGTA
TCTCTGGCCGGACCGTGGTCGGTCTTTCCGTTGGGGAACAAAAACAACCA
CAACGGAAAACAAATATCACAGATCCCTCGGCTGCAGTTTTTCCTGGGAT
GCGCCCTCTACGTGCTGCACAACGCGTGCGCGTGGCTTTACGTCCGAGGC
T
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig787:8998..13698+

>mRNA_Ecto-sp13_S_contig787.19141.1 ID=mRNA_Ecto-sp13_S_contig787.19141.1|Name=mRNA_Ecto-sp13_S_contig787.19141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig787:8998..13698+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACACTACCCCCACACACATGTACAACTGCCTGGGCTAACATGTTCACGAC
GCGGCGCCCTTCGCAGCAGCAGCAGCAGCAGCAACAGCAGTATAAAGACC
AACAGGACGAGCATAAGCTTCAGGATGAAACCCCCACGGAGTACTTCGAT
TTGAACGTCCTGAAAGGCGCGGTCTCGTTCAACACCAAGCCGTTCAAGCA
CCGGGCGCTGGTTTGGATCGGCTTCAAGAAGGTCTTGCTATTCCCATTCT
GCTGGAGCTGGTGGTTGGCTCGGATCCCTCGGCTGCAGTTTTTCCTGGGA
TGCGCCCTCTACGTGCTGCACAACGCGTGCGCGTGGCTTTACGTCCGAGG
C
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