mRNA_Ecto-sp13_S_contig7868.19138.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7868.19138.1
Unique NamemRNA_Ecto-sp13_S_contig7868.19138.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7868.19138.1 vs. uniprot
Match: A0A6H5KGZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ6_9PHAE)

HSP 1 Score: 349 bits (896), Expect = 4.860e-116
Identity = 173/183 (94.54%), Postives = 174/183 (95.08%), Query Frame = 1 
Query:  127 QRVGAASPICSSLQASTAAPPIPTTSPHHRVKTAETAAEPGLLEPTGVHHPFYSLSPLTEARAWAAREGQYFNGLIEANGGASVFKGHPGLAVTFLTDHASCEWFLSQSQDVLDRQDGAYFGPIKCKKEYIGESLPTLITNQKESHQTFRQHALRAFRSRVPFAQSAMTNATDTFYKDLRDNG 675
            QRVGAASP CSSLQA  AAPPI T SPHHRVKTAETAAEPGLLEPTGVHHPFYS SPLTEARAWAAREGQYFNGLIEANGGASVFKGHPGLAVTFLTDHASCEWFL Q QDVLDRQDGAYFGPIKCKKEYIGESLPTLITNQKESHQTFRQ ALRAFRSRVPFAQSAMTNATDTFYK+LRDNG
Sbjct:    2 QRVGAASPTCSSLQAPAAAPPILTISPHHRVKTAETAAEPGLLEPTGVHHPFYSFSPLTEARAWAAREGQYFNGLIEANGGASVFKGHPGLAVTFLTDHASCEWFLRQGQDVLDRQDGAYFGPIKCKKEYIGESLPTLITNQKESHQTFRQQALRAFRSRVPFAQSAMTNATDTFYKNLRDNG 184
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BLAST of mRNA_Ecto-sp13_S_contig7868.19138.1 vs. uniprot
Match: D8LQS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS7_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 5.220e-93
Identity = 132/150 (88.00%), Postives = 139/150 (92.67%), Query Frame = 1 
Query:  226 AETAAEPGLLEPTGVHHPFYSLSPLTEARAWAAREGQYFNGLIEANGGASVFKGHPGLAVTFLTDHASCEWFLSQSQDVLDRQDGAYFGPIKCKKEYIGESLPTLITNQKESHQTFRQHALRAFRSRVPFAQSAMTNATDTFYKDLRDNG 675
            A TAAEP LLEPTGVHHPF+SLSPLTEARAWAAREGQYFNGLIEANGGASV KGHP LAVTFLTDHASCEWF SQ Q+VLDRQDGAYFGP+KCKK+YIGESLPTL +NQKESHQ  R+H LR FRSRVPFAQSAMTNATDTFYK+LRDNG
Sbjct:    5 ATTAAEPDLLEPTGVHHPFHSLSPLTEARAWAAREGQYFNGLIEANGGASVSKGHPDLAVTFLTDHASCEWFFSQRQEVLDRQDGAYFGPLKCKKQYIGESLPTLASNQKESHQVLREHKLRVFRSRVPFAQSAMTNATDTFYKNLRDNG 154
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BLAST of mRNA_Ecto-sp13_S_contig7868.19138.1 vs. uniprot
Match: A0A6H5KJR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR0_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 9.790e-89
Identity = 142/189 (75.13%), Postives = 156/189 (82.54%), Query Frame = 1 
Query:  118 SPKQRVGAASPICSSLQASTAAPPIPTTSPHHRVKTAE---TAAEPGLLEPTGVHHPFYSLSPLTEARAWAAREGQYFNGLIEANGGASVFKGHPGLAVTFLTDHASCEWFLSQSQDVLDRQDGAYFGPIKCKKEYIGESLPTLITNQKESHQTFRQHALRAFRSRVPFAQSAMTNATDTFYKDLRDNG 675
            S K+R GA S   SSLQAST  PPIPT S H +VK A    T+AEPGLLEPTGVHHPFYSLSPLT A+AWAARE   FNGLIEANGGASVFKGHPGL VTFLTD ASCEWF SQSQ+VLDRQDGAYFGP+K K++YIGESLPTL +NQKE +Q  R+H +   RSR+PFAQSAMTNATDTFYK+LRD G
Sbjct:    5 SSKRRAGAVSSASSSLQASTXTPPIPTPS-HPKVKMAAATTTSAEPGLLEPTGVHHPFYSLSPLTGAKAWAAREEPCFNGLIEANGGASVFKGHPGLDVTFLTDQASCEWFFSQSQEVLDRQDGAYFGPLKRKQQYIGESLPTLASNQKEMYQVLREHKITVIRSRLPFAQSAMTNATDTFYKNLRDIG 192
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BLAST of mRNA_Ecto-sp13_S_contig7868.19138.1 vs. uniprot
Match: D8LQT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT0_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 1.270e-87
Identity = 135/158 (85.44%), Postives = 140/158 (88.61%), Query Frame = 1 
Query:    1 MPDNNNNRSRPLQRPLFFVXXXXXXXXXXSALTTHNVSTSPKQRVGAASPICSSLQASTAAPPIPTTSPHHRVKTAETAAEPGLLEPTGVHHPFYSLSPLTEARAWAAREGQYFNGLIEANGGASVFKGHPGLAVTFLTDHASCEWFLSQSQDVLDRQ 474
            MP+NNNNRSRPLQRPLF V          SALT  NVSTSPK RVGAAS  C  LQASTAAPPIPTTSPHHRVKTAETAAEPGLLEPTGVHHPF+SLSPL+EA+AWAAREGQYFNGLIEANGGASVFKGHPGLAVTFLTDHASCEWFLSQ+QDVLDRQ
Sbjct:    1 MPNNNNNRSRPLQRPLFLVLLGGGLLLAASALTARNVSTSPKPRVGAASSNCPLLQASTAAPPIPTTSPHHRVKTAETAAEPGLLEPTGVHHPFHSLSPLSEAKAWAAREGQYFNGLIEANGGASVFKGHPGLAVTFLTDHASCEWFLSQNQDVLDRQ 158
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BLAST of mRNA_Ecto-sp13_S_contig7868.19138.1 vs. uniprot
Match: A0A1L3HS58_ECTSI (Epoxyalcohol synthase CYP5164B1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A1L3HS58_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 1.370e-39
Identity = 68/142 (47.89%), Postives = 91/142 (64.08%), Query Frame = 1 
Query:  250 LLEPTGVHHPFYSLSPLTEARAWAAREGQYFNGLIEANGGASVFKGHPGLAVTFLTDHASCEWFLSQSQDVLDRQDGAYFGPIKCKKEYIGESLPTLITNQKESHQTFRQHALRAFRSRVPFAQSAMTNATDTFYKDLRDNG 675
            +LEP G HH ++SL P  EA  W++  G YF  + E NGGA ++K HPGL V  +TDHAS +WF +Q   VLDRQ G  FGP+KCK+EY+G+ LP L+TN  E H+  R + +   R R+    + + +AT  FYKDL  NG
Sbjct:    7 ILEPQGDHHAWFSLQPFLEAGKWSSTPGTYFKEMKEKNGGAPIYKAHPGLKVITITDHASGKWFFNQPDTVLDRQKGQRFGPLKCKEEYLGKGLPALVTNAMEKHEGARDYIVAVLRERLAATDTTLEHATANFYKDLWANG 148
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BLAST of mRNA_Ecto-sp13_S_contig7868.19138.1 vs. uniprot
Match: D8LCX4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX4_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 5.300e-19
Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:  250 LLEPTGVHHPFYSLSPLTEARAWAAREGQYFNGLIEANGGASVFKGHPGLAVTFLTDHASCEWFLSQSQDVLDRQ 474
            +LEP G HH ++SL P  EA  W++  G YF  + E NGGA ++K HPGL V  +TDHAS +WF +Q   VLDRQ
Sbjct:    7 ILEPQGDHHAWFSLQPFLEAGKWSSTPGTYFKEMKEKNGGAPIYKAHPGLKVITITDHASGKWFFNQPDTVLDRQ 81
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BLAST of mRNA_Ecto-sp13_S_contig7868.19138.1 vs. uniprot
Match: A0A521U079_9DELT (Uncharacterized protein n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A521U079_9DELT)

HSP 1 Score: 54.3 bits (129), Expect = 5.220e-5
Identity = 31/93 (33.33%), Postives = 46/93 (49.46%), Query Frame = 1 
Query:  265 GVHHPFYSLSPLTEARAWAAREGQYFNGLIEANGGASVFKGHPGLAVTFLTDHASCEWFLSQSQDVLDRQDGAYFGPIKCKKEYIGESLPTLI 543
            G+ H   SL P+ E   +      Y   L  A   A+VFK HPG+  TF+TD A  ++    + DVLDR +   FG +    + +G  +P L+
Sbjct:   12 GIWHGPLSLRPVKEVMRFVDECDNYTKEL-RATHQAAVFKAHPGIRSTFVTDMAGLDFVFDAAPDVLDRLEDPGFGGLSFDADLLGGVIPALL 103
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7868.19138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KGZ6_9PHAE4.860e-11694.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQS7_ECTSI5.220e-9388.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJR0_9PHAE9.790e-8975.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQT0_ECTSI1.270e-8785.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1L3HS58_ECTSI1.370e-3947.89Epoxyalcohol synthase CYP5164B1 n=2 Tax=Ectocarpus... [more]
D8LCX4_ECTSI5.300e-1952.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A521U079_9DELT5.220e-533.33Uncharacterized protein n=1 Tax=Myxococcaceae bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7868contigEcto-sp13_S_contig7868:4826..6277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size681
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_002160.1
Cds size681
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464057.524159-CDS-Ecto-sp13_S_contig7868:4825..52991681464057.524159-CDS-Ecto-sp13_S_contig7868:4825..5299Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7868 4826..5299 +
1681464057.5366087-CDS-Ecto-sp13_S_contig7868:6070..62771681464057.5366087-CDS-Ecto-sp13_S_contig7868:6070..6277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7868 6071..6277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7868.19138.1prot_Ecto-sp13_S_contig7868.19138.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7868 4826..6277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7868.19138.1

>prot_Ecto-sp13_S_contig7868.19138.1 ID=prot_Ecto-sp13_S_contig7868.19138.1|Name=mRNA_Ecto-sp13_S_contig7868.19138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=227bp
MPDNNNNRSRPLQRPLFFVLLGGGLLLAASALTTHNVSTSPKQRVGAASP
ICSSLQASTAAPPIPTTSPHHRVKTAETAAEPGLLEPTGVHHPFYSLSPL
TEARAWAAREGQYFNGLIEANGGASVFKGHPGLAVTFLTDHASCEWFLSQ
SQDVLDRQDGAYFGPIKCKKEYIGESLPTLITNQKESHQTFRQHALRAFR
SRVPFAQSAMTNATDTFYKDLRDNGE*
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mRNA from alignment at Ecto-sp13_S_contig7868:4826..6277+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7868.19138.1 ID=mRNA_Ecto-sp13_S_contig7868.19138.1|Name=mRNA_Ecto-sp13_S_contig7868.19138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1452bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7868:4826..6277+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTGACAACAACAACAACCGCTCACGGCCGCTGCAGCGGCCACTCTT
TTTTGTCCTCCTTGGTGGTGGTCTGCTTCTCGCCGCATCGGCCCTTACTA
CGCACAACGTCTCCACCTCCCCCAAGCAGCGTGTAGGCGCTGCTTCCCCC
ATCTGCTCGTCACTGCAAGCTTCGACGGCAGCGCCACCGATTCCCACCAC
ATCTCCCCACCACAGAGTCAAGACGGCCGAGACAGCTGCTGAACCAGGTC
TTCTCGAGCCCACCGGCGTTCACCACCCGTTCTACAGCTTGTCTCCACTC
ACCGAAGCGCGGGCATGGGCGGCGAGGGAGGGGCAGTACTTCAACGGCCT
GATCGAGGCCAACGGCGGCGCATCGGTGTTCAAGGGGCATCCGGGTCTCG
CTGTCACGTTCTTGACAGATCACGCCAGCTGCGAATGGTTCCTCAGCCAG
AGCCAAGATGTCTTGGATCGGCAGGTATGCATGCACCACATGTACGCGAA
CAGCCTGACTGTGGAGATATCCACACGTGTTTTTTGCGTCCGCTCGTCAA
TTTATTTCAAACAAATGTGTTGAGTTTGTGTGGGCAAGTCGGATATGCAT
GTGCTTGTGGCTTCGGGTCACCGCGGTATGGATGCCGAGCGTGCCAGCTT
TCCTCTCCGCATACAACATGAGACGGATAACACGCTGGCATGCCCAGATT
TGAGCAATTTCGCCCATTTCTCCGCTTCCCCGCTTTTTCGGAAATAATGC
CGACACCGCGTTGTGCTTTACGGGGTCTGGCGAACCACACAGGAGATTAT
TCCGTGCTGTTTGTTGAATATGTTGAGCAGCACGTTGACCACTGGACTGT
AGCAGTCAGCGCTGACTGGTCCAAAGTCCAGCGTACTTCTCAACATGCTA
TAGACTGACTCAAATGAGTTCAGAAGTCAAGGACAATGTGTTGGTTCTCT
CCGGAAGGGGTTGCTTCTCTCCGGACTTTTTAGCTCGGAGAGAAGCAACC
CATTCCCGCACAGACTATGCCTGAACTCCAATCCGGCCAGGGGATCGGAG
CAAGGATCCGCTGCTGTAAATACCTTATCGCCTCCCTGTTGTATATATCT
TCGTTGTGGAATCGTTCACTTGCTCGTGTTGACCTCGCACGATTTTTCTA
TTGATTTGTGTGTCTTATCCTCCTACTGTACCACCCCTTTGCGGTTCGCG
TCCGTGCGCATTTGTTCTGCACGCCCACGCGCGTCGCGGGCGCAGGATGG
GGCGTACTTCGGCCCGATCAAGTGCAAGAAGGAGTACATCGGCGAGTCGC
TGCCCACCCTCATCACCAACCAGAAGGAGTCGCACCAAACCTTTCGCCAA
CACGCACTCAGAGCTTTCCGATCGAGGGTCCCCTTCGCGCAGTCGGCCAT
GACCAACGCTACCGACACCTTCTACAAGGATCTCAGGGACAACGGTGAGT
GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7868:4826..6277+

>mRNA_Ecto-sp13_S_contig7868.19138.1 ID=mRNA_Ecto-sp13_S_contig7868.19138.1|Name=mRNA_Ecto-sp13_S_contig7868.19138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=681bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7868:4826..6277+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTGACAACAACAACAACCGCTCACGGCCGCTGCAGCGGCCACTCTT
TTTTGTCCTCCTTGGTGGTGGTCTGCTTCTCGCCGCATCGGCCCTTACTA
CGCACAACGTCTCCACCTCCCCCAAGCAGCGTGTAGGCGCTGCTTCCCCC
ATCTGCTCGTCACTGCAAGCTTCGACGGCAGCGCCACCGATTCCCACCAC
ATCTCCCCACCACAGAGTCAAGACGGCCGAGACAGCTGCTGAACCAGGTC
TTCTCGAGCCCACCGGCGTTCACCACCCGTTCTACAGCTTGTCTCCACTC
ACCGAAGCGCGGGCATGGGCGGCGAGGGAGGGGCAGTACTTCAACGGCCT
GATCGAGGCCAACGGCGGCGCATCGGTGTTCAAGGGGCATCCGGGTCTCG
CTGTCACGTTCTTGACAGATCACGCCAGCTGCGAATGGTTCCTCAGCCAG
AGCCAAGATGTCTTGGATCGGCAGGATGGGGCGTACTTCGGCCCGATCAA
GTGCAAGAAGGAGTACATCGGCGAGTCGCTGCCCACCCTCATCACCAACC
AGAAGGAGTCGCACCAAACCTTTCGCCAACACGCACTCAGAGCTTTCCGA
TCGAGGGTCCCCTTCGCGCAGTCGGCCATGACCAACGCTACCGACACCTT
CTACAAGGATCTCAGGGACAACGGTGAGTGA
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