mRNA_Ecto-sp13_S_contig78665.19137.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78665.19137.1
Unique NamemRNA_Ecto-sp13_S_contig78665.19137.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig78665.19137.1 vs. uniprot
Match: A0A6H5KX96_9PHAE (Pyr_redox_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX96_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.240e-39
Identity = 79/95 (83.16%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:    1 LEVDRRRGAVVVNAELAASSRVWVAGDAACFPSPAHGGRRLVIRSADHALHSGRLAGENMA--------------GGRRYRHTPAFVGEAPLAGV 243
            LEVDRRRGAVVVNAELAASSRVWVAGDAACFPS AHGGRRLVIRSADHALHSGRLAGENMA              GGRRY HTPAFVGEAPLAGV
Sbjct:  534 LEVDRRRGAVVVNAELAASSRVWVAGDAACFPSQAHGGRRLVIRSADHALHSGRLAGENMAVASGAARDGVGGNEGGRRYHHTPAFVGEAPLAGV 628
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BLAST of mRNA_Ecto-sp13_S_contig78665.19137.1 vs. uniprot
Match: A0A4D9CU82_9STRA (Pyr_redox_2 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CU82_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.340e-15
Identity = 47/82 (57.32%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:    1 LEVDRRRGAVVVNAELAASSRVWVAGDAACFPSPAHGGRRLVIRSADHALHSGRLAGENMAG-GRRYRHTPAFVGEAPLAGV 243
            LE D + GA+VV+ EL ASS V+VAGDAA FP    G +R+ +RSADHA HSG +AG NM G G RY+H P F G  P  GV
Sbjct:  338 LEADAKTGAIVVSHELQASSSVFVAGDAAHFPCTDLG-KRVNVRSADHAYHSGWVAGMNMTGRGVRYQHLPLFFGAIPRLGV 418
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BLAST of mRNA_Ecto-sp13_S_contig78665.19137.1 vs. uniprot
Match: A0A6P8I7A9_ACTTE (apoptosis-inducing factor 1, mitochondrial-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I7A9_ACTTE)

HSP 1 Score: 71.6 bits (174), Expect = 9.260e-13
Identity = 42/73 (57.53%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    1 LEVDRRRGAVVVNAELAASSRVWVAGDAACFPSPAHGGRRLVIRSADHALHSGRLAGENMAG-GRRYRHTPAF 216
            LEVDR  G   VN+EL A S +WVAGDAACF  P  G RR  +   DHA+ SGRLAGENM G G+ Y H   F
Sbjct:  428 LEVDRELGGFHVNSELEARSNIWVAGDAACFYDPNLGRRR--VEHHDHAVVSGRLAGENMTGAGKHYWHQSMF 498
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BLAST of mRNA_Ecto-sp13_S_contig78665.19137.1 vs. uniprot
Match: UPI00109B9F28 (apoptosis-inducing factor 1, mitochondrial n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109B9F28)

HSP 1 Score: 70.9 bits (172), Expect = 1.740e-12
Identity = 42/73 (57.53%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    1 LEVDRRRGAVVVNAELAASSRVWVAGDAACFPSPAHGGRRLVIRSADHALHSGRLAGENMAG-GRRYRHTPAF 216
            LEVDR  G   VN+EL A S +WVAGDAACF  P  G RR  +   DHA+ SGRLAGENM G G+ Y H   F
Sbjct:  517 LEVDRNLGGFHVNSELEARSNIWVAGDAACFYDPNLGRRR--VEHHDHAVVSGRLAGENMTGAGKPYWHQSMF 587
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BLAST of mRNA_Ecto-sp13_S_contig78665.19137.1 vs. uniprot
Match: A0A6A0GTT4_HYAAZ (Uncharacterized protein n=3 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0GTT4_HYAAZ)

HSP 1 Score: 70.1 bits (170), Expect = 3.240e-12
Identity = 44/73 (60.27%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    1 LEVDRRRGAVVVNAELAASSRVWVAGDAACFPSPAHGGRRLVIRSADHALHSGRLAGENMAG-GRRYRHTPAF 216
            LE+D RRG   VNAEL A S +WVAGDAACF    H GRR V    DHA+ SGRLAGENM G G+ Y H   F
Sbjct:  520 LELDERRGGFRVNAELEARSNLWVAGDAACFYD-VHLGRRRVEHH-DHAIVSGRLAGENMTGAGKPYWHQSMF 590
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BLAST of mRNA_Ecto-sp13_S_contig78665.19137.1 vs. uniprot
Match: UPI001E27A58B (apoptosis-inducing factor 1, mitochondrial n=1 Tax=Pieris rapae TaxID=64459 RepID=UPI001E27A58B)

HSP 1 Score: 69.7 bits (169), Expect = 4.390e-12
Identity = 43/75 (57.33%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:    1 LEVDRRRGAVVVNAELAASSRVWVAGDAACFPSPAHGGRRLVIRSADHALHSGRLAGENMAGGRR---YRHTPAF 216
            LE     G +VVNAELAA S +W AGD+AC+   A G RRL     DHA+ SGRLAGENMAGGRR   Y H   F
Sbjct:  415 LETHPTLGGLVVNAELAARSGLWAAGDSACYYDAALGRRRLDRH--DHAVASGRLAGENMAGGRRPRAYEHRSMF 487
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BLAST of mRNA_Ecto-sp13_S_contig78665.19137.1 vs. uniprot
Match: A0A7M7GBC5_NASVI (Uncharacterized protein n=3 Tax=Pteromalinae TaxID=272242 RepID=A0A7M7GBC5_NASVI)

HSP 1 Score: 69.3 bits (168), Expect = 6.050e-12
Identity = 42/73 (57.53%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    1 LEVDRRRGAVVVNAELAASSRVWVAGDAACFPSPAHGGRRLVIRSADHALHSGRLAGENMAGGRR-YRHTPAF 216
            LEVD  +G  +VNAEL A S +WVAGDAACF     G RR  I   DHA+ SGRLAGENM G R+ Y H   F
Sbjct:  492 LEVDPEQGGFLVNAELEARSNLWVAGDAACFYDVKLGRRR--IEHHDHAVISGRLAGENMTGARKPYLHQSMF 562
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BLAST of mRNA_Ecto-sp13_S_contig78665.19137.1 vs. uniprot
Match: F6ZHS2_CIOIN (Uncharacterized protein n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6ZHS2_CIOIN)

HSP 1 Score: 68.9 bits (167), Expect = 8.070e-12
Identity = 41/73 (56.16%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    1 LEVDRRRGAVVVNAELAASSRVWVAGDAACFPSPAHGGRRLVIRSADHALHSGRLAGENMAGGRR-YRHTPAF 216
            LE D R G   VNAEL A S +WVAGDA+CF     G RR  +   DHA+ SGRLAGENMAGG++ Y H   F
Sbjct:  287 LETDERFGGYRVNAELQARSNIWVAGDASCFFDAKLGRRR--VEHHDHAVVSGRLAGENMAGGQKSYYHQSMF 357
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BLAST of mRNA_Ecto-sp13_S_contig78665.19137.1 vs. uniprot
Match: T1KHA7_TETUR (Uncharacterized protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1KHA7_TETUR)

HSP 1 Score: 68.9 bits (167), Expect = 8.200e-12
Identity = 40/73 (54.79%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    1 LEVDRRRGAVVVNAELAASSRVWVAGDAACFPSPAHGGRRLVIRSADHALHSGRLAGENMAG-GRRYRHTPAF 216
            LEVD  +G  +VN+EL A S +WVAGDA+CF     G RR  +   DHA+ SGRLAGENM G G+ YRH   F
Sbjct:  412 LEVDEVQGGYLVNSELQARSDIWVAGDASCFYDMKLGRRR--VEHHDHAIISGRLAGENMTGAGKPYRHQSMF 482
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BLAST of mRNA_Ecto-sp13_S_contig78665.19137.1 vs. uniprot
Match: A0A6V7I8P1_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7I8P1_9HYME)

HSP 1 Score: 66.6 bits (161), Expect = 9.980e-12
Identity = 40/73 (54.79%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    1 LEVDRRRGAVVVNAELAASSRVWVAGDAACFPSPAHGGRRLVIRSADHALHSGRLAGENMAGGRR-YRHTPAF 216
            LE+D   G  +VNAEL A S +WVAGDAACF     G RR  +   DHA+ SGRLAGENM G R+ Y H   F
Sbjct:   24 LEIDPEIGGFLVNAELEARSNLWVAGDAACFYDIKLGRRR--VEHHDHAVISGRLAGENMTGARKPYLHQSMF 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78665.19137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX96_9PHAE2.240e-3983.16Pyr_redox_2 domain-containing protein n=2 Tax=Ecto... [more]
A0A4D9CU82_9STRA1.340e-1557.32Pyr_redox_2 domain-containing protein n=3 Tax=Mono... [more]
A0A6P8I7A9_ACTTE9.260e-1357.53apoptosis-inducing factor 1, mitochondrial-like n=... [more]
UPI00109B9F281.740e-1257.53apoptosis-inducing factor 1, mitochondrial n=1 Tax... [more]
A0A6A0GTT4_HYAAZ3.240e-1260.27Uncharacterized protein n=3 Tax=Hyalella azteca Ta... [more]
UPI001E27A58B4.390e-1257.33apoptosis-inducing factor 1, mitochondrial n=1 Tax... [more]
A0A7M7GBC5_NASVI6.050e-1257.53Uncharacterized protein n=3 Tax=Pteromalinae TaxID... [more]
F6ZHS2_CIOIN8.070e-1256.16Uncharacterized protein n=2 Tax=Ciona intestinalis... [more]
T1KHA7_TETUR8.200e-1254.79Uncharacterized protein n=1 Tax=Tetranychus urtica... [more]
A0A6V7I8P1_9HYME9.980e-1254.79Uncharacterized protein (Fragment) n=1 Tax=Bracon ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78665contigEcto-sp13_S_contig78665:342..626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score149.1
Seed ortholog evalue9.2e-34
Seed eggNOG ortholog2880.D8LDK2
Preferred nameAIFM1
Model size243
KEGG rclassRC00176
KEGG koko:K04727,ko:K17877
KEGG ReactionR00787,R00789
KEGG Pathwayko00910,ko01120,ko04210,ko04214,ko04217,map00910,map01120,map04210,map04214,map04217
KEGG ModuleM00531
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000302,GO:0000737,GO:0001101,GO:0002931,GO:0003254,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004174,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006259,GO:0006308,GO:0006309,GO:0006323,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006919,GO:0006921,GO:0006950,GO:0006952,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007584,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009055,GO:0009056,GO:0009057,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009893,GO:0009894,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010257,GO:0010604,GO:0010623,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0014070,GO:0015980,GO:0016020,GO:0016043,GO:0016174,GO:0016310,GO:0016491,GO:0016645,GO:0016649,GO:0016651,GO:0017144,GO:0019219,GO:0019222,GO:0019439,GO:0019637,GO:0019693,GO:0019866,GO:0019867,GO:0019899,GO:0022008,GO:0022411,GO:0022607,GO:0022900,GO:0022904,GO:0023052,GO:0030154,GO:0030162,GO:0030182,GO:0030261,GO:0030262,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031667,GO:0031668,GO:0031669,GO:0031960,GO:0031966,GO:0031967,GO:0031968,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032355,GO:0032368,GO:0032370,GO:0032409,GO:0032411,GO:0032501,GO:0032502,GO:0032870,GO:0032879,GO:0032981,GO:0033108,GO:0033554,GO:0033993,GO:0034599,GO:0034614,GO:0034622,GO:0034641,GO:0034655,GO:0034976,GO:0035556,GO:0035690,GO:0036094,GO:0036293,GO:0036294,GO:0042221,GO:0042391,GO:0042493,GO:0042542,GO:0042592,GO:0042773,GO:0042775,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043270,GO:0043280,GO:0043281,GO:0043523,GO:0043525,GO:0043933,GO:0044070,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0045862,GO:0046034,GO:0046483,GO:0046677,GO:0046700,GO:0048037,GO:0048468,GO:0048471,GO:0048518,GO:0048522,GO:0048545,GO:0048583,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050660,GO:0050662,GO:0050664,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050832,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051276,GO:0051336,GO:0051345,GO:0051385,GO:0051402,GO:0051704,GO:0051707,GO:0051716,GO:0051881,GO:0051900,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0061024,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070059,GO:0070301,GO:0070482,GO:0070887,GO:0070997,GO:0071103,GO:0071236,GO:0071241,GO:0071310,GO:0071383,GO:0071384,GO:0071389,GO:0071392,GO:0071396,GO:0071407,GO:0071453,GO:0071495,GO:0071496,GO:0071704,GO:0071731,GO:0071732,GO:0071840,GO:0071949,GO:0072521,GO:0080090,GO:0080134,GO:0090304,GO:0090305,GO:0090649,GO:0090650,GO:0097035,GO:0097159,GO:0097190,GO:0097193,GO:0097194,GO:0097237,GO:0097305,GO:0097306,GO:0097366,GO:0098542,GO:0098588,GO:0098805,GO:0110096,GO:1900117,GO:1900119,GO:1900161,GO:1900163,GO:1901135,GO:1901214,GO:1901216,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902065,GO:1902170,GO:1902510,GO:1902882,GO:1903624,GO:1903729,GO:1903793,GO:1904044,GO:1904045,GO:1905780,GO:1905782,GO:1905952,GO:1905954,GO:2000116,GO:2001056,GO:2001138,GO:2001140
Exons2
EggNOG free text desc.apoptosis-inducing factor
EggNOG OGsCOG0446@1,KOG1346@2759
EC1.7.1.4
Cds size243
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464057.4824705-CDS-Ecto-sp13_S_contig78665:341..5241681464057.4824705-CDS-Ecto-sp13_S_contig78665:341..524Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78665 342..524 +
1681464057.4946744-CDS-Ecto-sp13_S_contig78665:566..6261681464057.4946744-CDS-Ecto-sp13_S_contig78665:566..626Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78665 567..626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78665.19137.1prot_Ecto-sp13_S_contig78665.19137.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78665 342..626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78665.19137.1

>prot_Ecto-sp13_S_contig78665.19137.1 ID=prot_Ecto-sp13_S_contig78665.19137.1|Name=mRNA_Ecto-sp13_S_contig78665.19137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
LEVDRRRGAVVVNAELAASSRVWVAGDAACFPSPAHGGRRLVIRSADHAL
HSGRLAGENMAGGRRYRHTPAFVGEAPLAGV
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mRNA from alignment at Ecto-sp13_S_contig78665:342..626+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78665.19137.1 ID=mRNA_Ecto-sp13_S_contig78665.19137.1|Name=mRNA_Ecto-sp13_S_contig78665.19137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78665:342..626+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGAGGTGGACAGAAGGCGGGGCGCGGTCGTCGTAAACGCGGAGCTAGC
CGCGTCTTCGCGAGTCTGGGTGGCCGGCGACGCGGCCTGCTTCCCTTCCC
CGGCGCACGGCGGGCGGCGCCTCGTGATCCGATCGGCCGACCACGCTCTC
CACAGCGGTAGACTCGCCGGGGAGAACATGGCAGTGGGTTCGCGGGCTAC
GAAGGATGGGGTTGGGGGGAATGAGGGGGGTCGGAGATATCGCCACACCC
CAGCGTTTGTCGGGGAGGCGCCCTTGGCGGGGGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78665:342..626+

>mRNA_Ecto-sp13_S_contig78665.19137.1 ID=mRNA_Ecto-sp13_S_contig78665.19137.1|Name=mRNA_Ecto-sp13_S_contig78665.19137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78665:342..626+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGAGGTGGACAGAAGGCGGGGCGCGGTCGTCGTAAACGCGGAGCTAGC
CGCGTCTTCGCGAGTCTGGGTGGCCGGCGACGCGGCCTGCTTCCCTTCCC
CGGCGCACGGCGGGCGGCGCCTCGTGATCCGATCGGCCGACCACGCTCTC
CACAGCGGTAGACTCGCCGGGGAGAACATGGCAGGGGGTCGGAGATATCG
CCACACCCCAGCGTTTGTCGGGGAGGCGCCCTTGGCGGGGGTT
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