mRNA_Ecto-sp13_S_contig7864.19133.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7864.19133.1
Unique NamemRNA_Ecto-sp13_S_contig7864.19133.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7864.19133.1 vs. uniprot
Match: A0A6H5JI99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI99_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 3.970e-98
Identity = 150/153 (98.04%), Postives = 151/153 (98.69%), Query Frame = 1 
Query:    1 IPVMVLWEGISTGSTEMISTALHRGIWAQTVVFLVTLIACWSASPGTRPDWAFENSTGQAVGLVLILSWVAFCALAIWTVRGGLSIVILLHLGIIPLGVEVFESVLLFTSDASTFITYVLAVLNLVIVAPALVLVPVYFRFLRDEERRRRAPL 459
            IPVMVLWEGISTGSTEMISTALHRGIWAQTVVFLVTLIACWSASPGTRPDWAFENSTGQAVGLVLILSWVAFCALAIWTVRGGLSIVILLHLGI PLGVEVFESVLLFTS +STFITYVLAVLNLVIVAPALVLVPVYFRFLRDEERRRRAPL
Sbjct:   81 IPVMVLWEGISTGSTEMISTALHRGIWAQTVVFLVTLIACWSASPGTRPDWAFENSTGQAVGLVLILSWVAFCALAIWTVRGGLSIVILLHLGITPLGVEVFESVLLFTSSSSTFITYVLAVLNLVIVAPALVLVPVYFRFLRDEERRRRAPL 233
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7864.19133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI99_9PHAE3.970e-9898.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7864contigEcto-sp13_S_contig7864:145..606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size462
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-20_002900.1
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464057.2907662-UTR-Ecto-sp13_S_contig7864:144..1531681464057.2907662-UTR-Ecto-sp13_S_contig7864:144..153Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7864 145..153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464057.3029318-CDS-Ecto-sp13_S_contig7864:153..6061681464057.3029318-CDS-Ecto-sp13_S_contig7864:153..606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7864 154..606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7864.19133.1prot_Ecto-sp13_S_contig7864.19133.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7864 154..606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7864.19133.1

>prot_Ecto-sp13_S_contig7864.19133.1 ID=prot_Ecto-sp13_S_contig7864.19133.1|Name=mRNA_Ecto-sp13_S_contig7864.19133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp
MVLWEGISTGSTEMISTALHRGIWAQTVVFLVTLIACWSASPGTRPDWAF
ENSTGQAVGLVLILSWVAFCALAIWTVRGGLSIVILLHLGIIPLGVEVFE
SVLLFTSDASTFITYVLAVLNLVIVAPALVLVPVYFRFLRDEERRRRAPL
*
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mRNA from alignment at Ecto-sp13_S_contig7864:145..606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7864.19133.1 ID=mRNA_Ecto-sp13_S_contig7864.19133.1|Name=mRNA_Ecto-sp13_S_contig7864.19133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7864:145..606+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCCCGTCATGGTCCTGTGGGAAGGGATCTCGACGGGCTCGACGGAGAT
GATCTCAACCGCTCTCCACCGGGGGATCTGGGCCCAGACGGTCGTCTTCC
TGGTTACCTTGATCGCCTGCTGGAGCGCCTCCCCGGGCACGCGGCCCGAC
TGGGCGTTCGAGAACTCCACGGGACAGGCGGTAGGGCTGGTGCTCATCTT
GTCCTGGGTGGCATTCTGCGCGCTGGCGATCTGGACCGTTCGCGGCGGCC
TGAGCATCGTCATCCTCCTCCACCTCGGCATTATTCCGCTCGGGGTGGAG
GTGTTTGAGAGCGTGCTGCTGTTCACGAGCGACGCCTCGACGTTCATCAC
GTACGTCCTGGCGGTCCTGAACCTGGTCATCGTCGCCCCCGCGCTGGTGT
TGGTGCCCGTGTACTTTAGGTTTCTGCGAGACGAGGAGAGGAGAAGACGT
GCCCCTTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7864:145..606+

>mRNA_Ecto-sp13_S_contig7864.19133.1 ID=mRNA_Ecto-sp13_S_contig7864.19133.1|Name=mRNA_Ecto-sp13_S_contig7864.19133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7864:145..606+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCCTGTGGGAAGGGATCTCGACGGGCTCGACGGAGATGATCTCAAC
CGCTCTCCACCGGGGGATCTGGGCCCAGACGGTCGTCTTCCTGGTTACCT
TGATCGCCTGCTGGAGCGCCTCCCCGGGCACGCGGCCCGACTGGGCGTTC
GAGAACTCCACGGGACAGGCGGTAGGGCTGGTGCTCATCTTGTCCTGGGT
GGCATTCTGCGCGCTGGCGATCTGGACCGTTCGCGGCGGCCTGAGCATCG
TCATCCTCCTCCACCTCGGCATTATTCCGCTCGGGGTGGAGGTGTTTGAG
AGCGTGCTGCTGTTCACGAGCGACGCCTCGACGTTCATCACGTACGTCCT
GGCGGTCCTGAACCTGGTCATCGTCGCCCCCGCGCTGGTGTTGGTGCCCG
TGTACTTTAGGTTTCTGCGAGACGAGGAGAGGAGAAGACGTGCCCCTTTG
TGA
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