mRNA_Ecto-sp13_S_contig7859.19130.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7859.19130.1
Unique NamemRNA_Ecto-sp13_S_contig7859.19130.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7859.19130.1 vs. uniprot
Match: A0A7R9VRQ8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VRQ8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.770e-16
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   25 ESASLNRTYRLFRTLGLRHLCVVNHHNQVVGIVTRKDLLPGHL 153
            E+AS+ RTYRLFRTLGLR LCVVNH+NQVVGI+TRKDLLP  L
Sbjct:   59 ETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPESL 101
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BLAST of mRNA_Ecto-sp13_S_contig7859.19130.1 vs. uniprot
Match: W7U4Q6_9STRA (Chloride channel 7 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4Q6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 8.100e-16
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   25 ESASLNRTYRLFRTLGLRHLCVVNHHNQVVGIVTRKDLLPGHL 153
            E+ASL RTYRLFRT+GLRHLCVVN HNQV GI+TR DLLP +L
Sbjct:   10 ETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNL 52
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BLAST of mRNA_Ecto-sp13_S_contig7859.19130.1 vs. uniprot
Match: A0A7S0UJS8_9STRA (Chloride channel protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UJS8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.580e-15
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   25 ESASLNRTYRLFRTLGLRHLCVVNHHNQVVGIVTRKDLLPGHL 153
            E+AS+ RTYRLFRTLGLR LCVVNH+NQVVGI+TRKDLLP  L
Sbjct:  678 ETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPASL 720
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BLAST of mRNA_Ecto-sp13_S_contig7859.19130.1 vs. uniprot
Match: A0A7R9ZRT7_9STRA (Chloride channel protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRT7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.810e-15
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   25 ESASLNRTYRLFRTLGLRHLCVVNHHNQVVGIVTRKDLLPGHL 153
            E+AS+ RTYRLFRTLGLR LCVVNH+NQVVGI+TRKDLLP  L
Sbjct:  257 ETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPEAL 299
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BLAST of mRNA_Ecto-sp13_S_contig7859.19130.1 vs. uniprot
Match: A0A1E7FXI3_9STRA (Chloride channel protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXI3_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.540e-15
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   25 ESASLNRTYRLFRTLGLRHLCVVNHHNQVVGIVTRKDLLPGHL 153
            E+AS+ RTYRLFRTLGLR LCVVNH+NQVVGI+TRKDLLP  L
Sbjct:  734 ETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPESL 776
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BLAST of mRNA_Ecto-sp13_S_contig7859.19130.1 vs. uniprot
Match: A0A7S2YMG2_9STRA (Chloride channel protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YMG2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.170e-14
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   25 ESASLNRTYRLFRTLGLRHLCVVNHHNQVVGIVTRKDLLPGHL 153
            E+AS+ RTYRLFRTLGLR LCVVNH+NQVVGI+TRKDLLP  L
Sbjct:  673 ETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPEAL 715
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BLAST of mRNA_Ecto-sp13_S_contig7859.19130.1 vs. uniprot
Match: A0A1Z5JAK4_FISSO (Chloride channel protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAK4_FISSO)

HSP 1 Score: 75.5 bits (184), Expect = 1.170e-14
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   25 ESASLNRTYRLFRTLGLRHLCVVNHHNQVVGIVTRKDLLPGHL 153
            E+AS+ RTYRLFRTLGLR LCVVNH+NQVVGI+TRKDLLP  L
Sbjct:  801 ETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPRAL 843
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BLAST of mRNA_Ecto-sp13_S_contig7859.19130.1 vs. uniprot
Match: A0A7S4S7C7_9STRA (Chloride channel protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S7C7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.170e-14
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   25 ESASLNRTYRLFRTLGLRHLCVVNHHNQVVGIVTRKDLLPGHL 153
            E+AS+ RTYRLFRTLGLR LCVVNH+NQVVGI+TRKDLLP  L
Sbjct:  815 ETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDLLPEAL 857
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7859.19130.1 vs. uniprot
Match: A0A4D9D9F8_9STRA (Chloride channel protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9F8_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.980e-14
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   25 ESASLNRTYRLFRTLGLRHLCVVNHHNQVVGIVTRKDLLPGHL 153
            E+ASL RTYRLFRT+GLRHLCVVN HNQV GI+TR DLLP +L
Sbjct:  886 ETASLVRTYRLFRTMGLRHLCVVNSHNQVTGIITRYDLLPDNL 928
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7859.19130.1 vs. uniprot
Match: A0A7S1D5H2_CYCTE (Chloride channel protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5H2_CYCTE)

HSP 1 Score: 73.9 bits (180), Expect = 3.980e-14
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:   25 ESASLNRTYRLFRTLGLRHLCVVNHHNQVVGIVTRKDLLP 144
            E+AS+ RTYRLFRTLGLR L VVNHHNQVVGI+TRKDLLP
Sbjct:  374 ETASIQRTYRLFRTLGLRFLVVVNHHNQVVGIITRKDLLP 413
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7859.19130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9VRQ8_9STRA1.770e-1681.40Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
W7U4Q6_9STRA8.100e-1679.07Chloride channel 7 n=1 Tax=Nannochloropsis gaditan... [more]
A0A7S0UJS8_9STRA4.580e-1581.40Chloride channel protein n=1 Tax=Pseudo-nitzschia ... [more]
A0A7R9ZRT7_9STRA6.810e-1581.40Chloride channel protein n=1 Tax=Craspedostauros a... [more]
A0A1E7FXI3_9STRA8.540e-1581.40Chloride channel protein n=1 Tax=Fragilariopsis cy... [more]
A0A7S2YMG2_9STRA1.170e-1481.40Chloride channel protein n=1 Tax=Amphiprora paludo... [more]
A0A1Z5JAK4_FISSO1.170e-1481.40Chloride channel protein n=2 Tax=Fistulifera solar... [more]
A0A7S4S7C7_9STRA1.170e-1481.40Chloride channel protein n=3 Tax=Ditylum brightwel... [more]
A0A4D9D9F8_9STRA2.980e-1479.07Chloride channel protein n=2 Tax=Monodopsidaceae T... [more]
A0A7S1D5H2_CYCTE3.980e-1485.00Chloride channel protein n=1 Tax=Cyclophora tenuis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7859contigEcto-sp13_S_contig7859:6050..7151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score77.0
Seed ortholog evalue2.8e-12
Seed eggNOG ortholog2850.Phatr52412
Preferred nameCLCN7
Model size153
KEGG koko:K05015,ko:K05016
KEGG TC2.A.49.3.3,2.A.49.3.4
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000323,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006884,GO:0007039,GO:0007154,GO:0007165,GO:0007600,GO:0008150,GO:0008152,GO:0008308,GO:0008361,GO:0008509,GO:0009056,GO:0009057,GO:0009268,GO:0009605,GO:0009612,GO:0009628,GO:0009987,GO:0010008,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015291,GO:0015297,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0016043,GO:0019538,GO:0019725,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0023052,GO:0030163,GO:0031090,GO:0031224,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032535,GO:0034220,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0050975,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090066,GO:0097708,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0098852,GO:1901564,GO:1901565,GO:1901575,GO:1902476,GO:1905146
Exons2
EggNOG free text desc.chloride channel
EggNOG OGs2XAQC@2836,COG0038@1,KOG0474@2759
Cds size153
COG Functional cat.P
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464057.0067062-CDS-Ecto-sp13_S_contig7859:6049..60941681464057.0067062-CDS-Ecto-sp13_S_contig7859:6049..6094Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7859 6050..6094 -
1681464057.0183854-CDS-Ecto-sp13_S_contig7859:7043..71511681464057.0183854-CDS-Ecto-sp13_S_contig7859:7043..7151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7859 7044..7151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7859.19130.1prot_Ecto-sp13_S_contig7859.19130.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7859 6050..7151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7859.19130.1

>prot_Ecto-sp13_S_contig7859.19130.1 ID=prot_Ecto-sp13_S_contig7859.19130.1|Name=mRNA_Ecto-sp13_S_contig7859.19130.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
MFGLTPRAESASLNRTYRLFRTLGLRHLCVVNHHNQVVGIVTRKDLLPGH
L
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mRNA from alignment at Ecto-sp13_S_contig7859:6050..7151-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7859.19130.1 ID=mRNA_Ecto-sp13_S_contig7859.19130.1|Name=mRNA_Ecto-sp13_S_contig7859.19130.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7859:6050..7151- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGGGTTGACCCCGAGGGCAGAGTCGGCGTCGTTGAACCGAACGTA
CCGGCTGTTCCGAACTCTGGGGCTCCGACATCTGTGCGTCGTCAACCACC
ACAACCAGGTCCGTAATTTTTGTTCGTGCGTGATTTTGCGACTCGCCGGC
CGAGCCCTTTCTTTGCGACCCCGAACTTATTCGCCTTCCGGCTACAGAAA
GCGCCACCGCTCGAAGAACCTCTCATTTGGGCCGAGGCTATTTTTCTTGT
TGTATAAGGTACCCCCGCGGCGACTTTATTAGTGTAGGCTTCTCGACTGG
GCACGAGATTTTTGTTGTGGCCAAGTTGTTAGATTTTTTTTTTTGGTAGG
CTCAAGTTCTTCACCGTGAAGTGGTGGCGCGTTCTGTGCTAGAGATGGCA
CAAAAACCTCGCATGGGGGCTCTCGCGTCGGAGACATGCGATCTTCACCT
TGTACTGTACCCGCCGCGCTCTTGTGGTGTTACCGCAAGAGACGGAGAGA
TGACACCCCCCCTGGACCGATTTACAAAGCTCGATTCCTCCAGACTCAAG
CTTTTCCTAACTCCAAAGAATGAACGATGCTTATGGAAAGTTCTCGTCGA
GAGCTTTCCGTAGACGTATCGGGCTCTTTCCGGACCCCTTTGGTTGTGGA
GCTATCGAGCTTGGAAATTTGGTCTAGGGGGATCGGGGCCATCTCTCCGA
CTCGTACGGAATACCACAGTGCGGTATGTGGTACGGTACTGACAATCTTG
GTTGTGGAGAAATCGAGCTTGGGATTTTTGGTCTAGTGGGGGGGGAATGT
CTCCGCCACTTACGATGTATGCATGTGTGCCAGGCATGATGCAGCTCCTC
CCCGAGTTTTTTTTTTTTTGTGATGATCCCTGCTTGTGGGGTGTTTTTGA
AAATGTTATTGATTTTTTTTCTTGTTACTGTTCAACTACTTTTTGTCGCC
CCCCTCCGTCCTCCGTCCTCTCGAAGACGCGTGGTCAATGGTCCAGCCGC
CAAGGCATGCAAAGCATAAGAGTACGCCCCCCCCTCCCCCCCCTCCCCCC
CCCTAAGGTGGTGGGTATCGTGACGAGAAAGGACCTTCTGCCGGGACACC
TC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7859:6050..7151-

>mRNA_Ecto-sp13_S_contig7859.19130.1 ID=mRNA_Ecto-sp13_S_contig7859.19130.1|Name=mRNA_Ecto-sp13_S_contig7859.19130.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7859:6050..7151- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGGGTTGACCCCGAGGGCAGAGTCGGCGTCGTTGAACCGAACGTA
CCGGCTGTTCCGAACTCTGGGGCTCCGACATCTGTGCGTCGTCAACCACC
ACAACCAGGTGGTGGGTATCGTGACGAGAAAGGACCTTCTGCCGGGACAC
CTC
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