mRNA_Ecto-sp13_S_contig78574.19127.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78574.19127.1
Unique NamemRNA_Ecto-sp13_S_contig78574.19127.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig78574.19127.1 vs. uniprot
Match: D8LPW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW3_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.790e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1
Query:    1 MAKALLLNALHDALSDYVVGLSPERLKVGVWSGKIVLDELQV 126
            MAKALLLNALHDALSDYVVGLSPERLKVGVWSGKIVLDELQV
Sbjct:    1 MAKALLLNALHDALSDYVVGLSPERLKVGVWSGKIVLDELQV 42          
BLAST of mRNA_Ecto-sp13_S_contig78574.19127.1 vs. uniprot
Match: A0A6H5K5U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5U0_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.570e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 1
Query:    1 MAKALLLNALHDALSDYVVGLSPERLKVGVWSGKIVLDELQV 126
            MAKALLL+ALHDALSDYVVGLSPERLKVGVWSG IVLDELQV
Sbjct:    1 MAKALLLSALHDALSDYVVGLSPERLKVGVWSGTIVLDELQV 42          
BLAST of mRNA_Ecto-sp13_S_contig78574.19127.1 vs. uniprot
Match: A0A836C8S3_9STRA (Peroxin/Ferlin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.590e-9
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    1 MAKALLLNALHDALSDYVVGLSPERLKVGVWSGKIVLDELQV 126
            MAK LLLNAL  A +DYVVGL+ ++LK+GVWSG+I L +LQV
Sbjct:    1 MAKRLLLNALRSAFADYVVGLTEDKLKLGVWSGEIELHDLQV 42          
BLAST of mRNA_Ecto-sp13_S_contig78574.19127.1 vs. uniprot
Match: A0A7S3YJ41_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJ41_HETAK)

HSP 1 Score: 57.4 bits (137), Expect = 1.190e-8
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 1
Query:    1 MAKALLLNALHDALSDYVVGLSPERLKVGVWSGKIVLDELQV 126
            MAK LLLN L D   DYVVGLS E LKVGV+ GKI L++LQ+
Sbjct:    1 MAKTLLLNTLSDLFGDYVVGLSKENLKVGVFKGKIELNDLQL 42          
BLAST of mRNA_Ecto-sp13_S_contig78574.19127.1 vs. uniprot
Match: A0A7S3ZZ16_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZ16_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.440e-7
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query:    7 KALLLNALHDALSDYVVGLSPERLKVGVWSGKIVLDELQV 126
            K LL   L DAL DY+ GL+PE LK+G+WSGKI L  L+V
Sbjct:    4 KKLLYGVLQDALGDYIEGLAPESLKLGLWSGKIELQNLRV 43          
BLAST of mRNA_Ecto-sp13_S_contig78574.19127.1 vs. uniprot
Match: A0A4D9D3E8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3E8_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.450e-6
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1
Query:    1 MAKALLLNALHDALSDYVVGLSPERLKVGVWSGKIVLDELQV 126
            MA+ LLLN L  A  D V GL+ E LKVGVWSG+I+L  L++
Sbjct:    1 MARQLLLNTLTSAFGDLVEGLTEENLKVGVWSGEILLKNLRL 42          
BLAST of mRNA_Ecto-sp13_S_contig78574.19127.1 vs. uniprot
Match: F0YBC1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBC1_AURAN)

HSP 1 Score: 50.4 bits (119), Expect = 5.450e-6
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1
Query:    7 KALLLNALHDALSDYVVGLSPERLKVGVWSGKIVLDELQV 126
            K +L NAL   + D +VG + ++LKVG+WSGKI LD L+V
Sbjct:  543 KTVLFNALQGVIGDLIVGFTADKLKVGLWSGKIELDNLEV 582          
BLAST of mRNA_Ecto-sp13_S_contig78574.19127.1 vs. uniprot
Match: I2CPP9_NANGC (Vacuolar protein sorting-associated protein vps13 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPP9_NANGC)

HSP 1 Score: 49.7 bits (117), Expect = 6.810e-6
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1
Query:    1 MAKALLLNALHDALSDYVVGLSPERLKVGVWSGKIVLDELQV 126
            MA+ LLLN L  A  D V GL+ E LKVGVWSG+I+L  L++
Sbjct:    1 MARQLLLNTLTAAFGDLVEGLTEENLKVGVWSGEILLKNLRL 42          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78574.19127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LPW3_ECTSI1.790e-18100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5U0_9PHAE5.570e-1795.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8S3_9STRA1.590e-966.67Peroxin/Ferlin domain-containing protein n=1 Tax=T... [more]
A0A7S3YJ41_HETAK1.190e-866.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3ZZ16_9STRA4.440e-760.00Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A4D9D3E8_9STRA5.450e-657.14Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
F0YBC1_AURAN5.450e-652.50Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
I2CPP9_NANGC6.810e-657.14Vacuolar protein sorting-associated protein vps13 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78574contigEcto-sp13_S_contig78574:406..534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score86.3
Seed ortholog evalue3.9e-15
Seed eggNOG ortholog2880.D8LPW3
Model size129
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
Cds size129
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464056.791734-CDS-Ecto-sp13_S_contig78574:405..5341681464056.791734-CDS-Ecto-sp13_S_contig78574:405..534Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78574 406..534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78574.19127.1prot_Ecto-sp13_S_contig78574.19127.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78574 406..534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78574.19127.1

>prot_Ecto-sp13_S_contig78574.19127.1 ID=prot_Ecto-sp13_S_contig78574.19127.1|Name=mRNA_Ecto-sp13_S_contig78574.19127.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
MAKALLLNALHDALSDYVVGLSPERLKVGVWSGKIVLDELQV*
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mRNA from alignment at Ecto-sp13_S_contig78574:406..534+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78574.19127.1 ID=mRNA_Ecto-sp13_S_contig78574.19127.1|Name=mRNA_Ecto-sp13_S_contig78574.19127.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78574:406..534+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAAGGCGCTCCTGCTCAACGCGTTGCATGACGCGCTGTCGGACTA TGTCGTTGGACTCTCTCCTGAGCGCCTCAAGGTCGGGGTGTGGTCGGGCA AGATCGTGCTGGATGAACTGCAGGTATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78574:406..534+

>mRNA_Ecto-sp13_S_contig78574.19127.1 ID=mRNA_Ecto-sp13_S_contig78574.19127.1|Name=mRNA_Ecto-sp13_S_contig78574.19127.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78574:406..534+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAAGGCGCTCCTGCTCAACGCGTTGCATGACGCGCTGTCGGACTA
TGTCGTTGGACTCTCTCCTGAGCGCCTCAAGGTCGGGGTGTGGTCGGGCA
AGATCGTGCTGGATGAACTGCAGGTATGA
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