prot_Ecto-sp13_S_contig7853.19121.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7853.19121.1
Unique Nameprot_Ecto-sp13_S_contig7853.19121.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length189
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7853.19121.1 vs. uniprot
Match: D8LR05_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR05_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 1.670e-76
Identity = 137/198 (69.19%), Postives = 148/198 (74.75%), Query Frame = 0 
Query:    1 MCSPDNNNEQCGYDGGDCCWCDCNSPD--CEEKGDPSYDCIDPESRCKGE-----GSLPIRGLQ----VDNTGVPTSSPTTA-PIADGTLXXXXXXXXXAMPADLVSPGISTPTDPSSDGVPLXXXXXXXXXXXVIVAIISAVAIKTGLLKSSTHGNTGPTPAVPVDPVYPAALQQYPSQSSARPTTQYPGAHQYPAP 186
            +C+P+NNNE CGYDGGDCCWCDC+S +  CEE+GD SY+CIDPE+ CK E     GSLPIRGLQ    VDNTGVPTSSPTTA PIAD +          AMP   VSPG+S PTDPSSDGVPL    XXXXXXX        VAIK GLLK+S H NTGPTPA PVDP YPAALQQYPSQSS RPTTQYPGAHQYPAP
Sbjct:   50 ICTPENNNELCGYDGGDCCWCDCDSTEYPCEEQGDSSYNCIDPETTCKEEEEEEEGSLPIRGLQESPRVDNTGVPTSSPTTAAPIADSSTFSPTAA---AMPVVPVSPGVSQPTDPSSDGVPLGPVVXXXXXXXXXXXXXXXVAIKAGLLKNSRHSNTGPTPAAPVDPAYPAALQQYPSQSSGRPTTQYPGAHQYPAP 244
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7853.19121.1 vs. uniprot
Match: D7G136_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G136_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 9.190e-9
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 0 
Query:    1 MCSPDNNNEQCGYDGGDCCWCDCNSPDCEEKGDPSYDCIDPESRCKGE 48
            +C+  NNN  C +D GDCCWCDC+  +C   GD  YDC++P+S C G+
Sbjct:  222 ICTEANNNADCTFDDGDCCWCDCDHENCPPPGDEDYDCVNPDSSCYGD 269
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7853.19121.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 6.950e-5
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 0 
Query:    2 CSPDNNNEQCGYDGGDCCWCDCNSPDCEEKGDPSYDCIDPESRCKGEGSLPIRGLQVDNTGV 63
            C   NNNE+CGYDGGDCC+C C   D  E G   + CIDP + C  +  + +    V+N GV
Sbjct:  189 CDQINNNEECGYDGGDCCFCTC-LDDFYECGIRGFACIDPSAECADDDDVTVD--TVENCGV 247
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7853.19121.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR05_ECTSI1.670e-7669.19LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G136_ECTSI9.190e-950.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTT4_9PHAE6.950e-545.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 111..133
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..110
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 134..188
NoneNo IPR availableTMHMMTMhelixcoord: 111..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7853contigEcto-sp13_S_contig7853:179..2583 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7853.19121.1mRNA_Ecto-sp13_S_contig7853.19121.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7853 125..2994 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7853.19121.1 ID=prot_Ecto-sp13_S_contig7853.19121.1|Name=mRNA_Ecto-sp13_S_contig7853.19121.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
MCSPDNNNEQCGYDGGDCCWCDCNSPDCEEKGDPSYDCIDPESRCKGEGS
LPIRGLQVDNTGVPTSSPTTAPIADGTLSSTFSPTATAMPADLVSPGIST
PTDPSSDGVPLGPVVGGVAGGVVIVAIISAVAIKTGLLKSSTHGNTGPTP
AVPVDPVYPAALQQYPSQSSARPTTQYPGAHQYPAPAY*
back to top