mRNA_Ecto-sp13_S_contig7853.19121.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7853.19121.1 vs. uniprot
Match: D8LR05_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR05_ECTSI) HSP 1 Score: 259 bits (662), Expect = 2.070e-82 Identity = 148/215 (68.84%), Postives = 161/215 (74.88%), Query Frame = 1
Query: 7 SAKYPDCDGVLN-IGTGMCSPDNNNEQCGYDGGDCCWCDCNSPD--CEEKGDPSYDCIDPESRCKGE-----GSLPIRGLQ----VDNTGVPTSSPTTA-PIADGTLXXXXXXXXXAMPADLVSPGISTPTDPSSDGVPLXXXXXXXXXXXVIVAIISAVAIKTGLLKSSTHGNTGPTPAVPVDPVYPAALQQYPSQSSARPTTQYPGAHQYPAP 612
SA YPDC+G + IGTG+C+P+NNNE CGYDGGDCCWCDC+S + CEE+GD SY+CIDPE+ CK E GSLPIRGLQ VDNTGVPTSSPTTA PIAD + AMP VSPG+S PTDPSSDGVPL XXXXXXX VAIK GLLK+S H NTGPTPA PVDP YPAALQQYPSQSS RPTTQYPGAHQYPAP
Sbjct: 33 SADYPDCEGFIGRIGTGICTPENNNELCGYDGGDCCWCDCDSTEYPCEEQGDSSYNCIDPETTCKEEEEEEEGSLPIRGLQESPRVDNTGVPTSSPTTAAPIADSSTFSPTAA---AMPVVPVSPGVSQPTDPSSDGVPLGPVVXXXXXXXXXXXXXXXVAIKAGLLKNSRHSNTGPTPAAPVDPAYPAALQQYPSQSSGRPTTQYPGAHQYPAP 244
BLAST of mRNA_Ecto-sp13_S_contig7853.19121.1 vs. uniprot
Match: D7G136_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G136_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 5.060e-9 Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 49 TGMCSPDNNNEQCGYDGGDCCWCDCNSPDCEEKGDPSYDCIDPESRCKGE 198
TG+C+ NNN C +D GDCCWCDC+ +C GD YDC++P+S C G+
Sbjct: 220 TGICTEANNNADCTFDDGDCCWCDCDHENCPPPGDEDYDCVNPDSSCYGD 269
BLAST of mRNA_Ecto-sp13_S_contig7853.19121.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 63.9 bits (154), Expect = 2.090e-7 Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 10 AKYPDCDG-VLNIGTGMCSPDNNNEQCGYDGGDCCWCDCNSPDCEEKGDPSYDCIDPES 183
A++PDC G L +G G CS NNN+ CGYDGGDCC C C +C S++C+DP +
Sbjct: 61 AEFPDCTGDYLTVGDGSCSKANNNDLCGYDGGDCCVCSCQGVNCMRT---SFECLDPSA 116
BLAST of mRNA_Ecto-sp13_S_contig7853.19121.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 2.810e-7 Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 10 AKYPDCDG-VLNIGTGMCSPDNNNEQCGYDGGDCCWCDCNSPDCEEKGDPSYDCIDPES 183
A++PDC G L +G G CS NNN+ CGYDGGDCC C C +C S++C+DP +
Sbjct: 120 AEFPDCTGDYLTVGDGSCSEANNNDLCGYDGGDCCVCSCQGVNCMTT---SFECLDPSA 175
BLAST of mRNA_Ecto-sp13_S_contig7853.19121.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI) HSP 1 Score: 62.0 bits (149), Expect = 4.820e-7 Identity = 32/73 (43.84%), Postives = 41/73 (56.16%), Query Frame = 1
Query: 13 KYPDCDGVLNIGTGMCSPDNNNEQCGYDGGDCCWCDCNSPD-------CEEKGD-PSYDCIDPESRCKGEGSL 207
+Y C V IG GMC +NN E+CG+DGGDCC C C P C+E + S+DC+D + C GE L
Sbjct: 303 QYEHCGWVTRIGDGMCDDENNKEECGFDGGDCCDCTCVVPSSAWSDYACQEVYNINSFDCLDTSASCYGEEHL 375
BLAST of mRNA_Ecto-sp13_S_contig7853.19121.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 4.880e-7 Identity = 39/102 (38.24%), Postives = 48/102 (47.06%), Query Frame = 1
Query: 16 YPDCDGVLNIGTGMCSPDNNNEQCGYDGGDCCWCDCNSPDCE------EKGDPSYDCIDPESRCKGEGSLPIRGLQVDNTG-----VPTSSPTTAPIADGTL 288
+ +C V IG G C +NN E+CGYDGGDCC C C SP + E G S+DC DP + C GE S D+ VP P DG +
Sbjct: 164 FENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYG--SFDCQDPNASCFGEESTGSDDYSTDDEPMSYEFVPWEETEALPTVDGAV 263
BLAST of mRNA_Ecto-sp13_S_contig7853.19121.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 5.540e-7 Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 1
Query: 16 YPDCDGVLNIGTGMCSPDNNNEQCGYDGGDCCWCDCNSPDCEEKGDPSYDCIDPESRCKGEGSLPIRGLQVDNTG 240
+ +C+ +N+G G C NNNE CGYDGGDCC C C + E+ + CIDP + C + + I V+N G
Sbjct: 416 FVNCEYPVNVGDGWCDQGNNNEACGYDGGDCCECTCENERDEDYRCMEFSCIDPSAPCVNDDDVTID--MVENCG 488
BLAST of mRNA_Ecto-sp13_S_contig7853.19121.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 5.870e-7 Identity = 39/102 (38.24%), Postives = 48/102 (47.06%), Query Frame = 1
Query: 16 YPDCDGVLNIGTGMCSPDNNNEQCGYDGGDCCWCDCNSPDCE------EKGDPSYDCIDPESRCKGEGSLPIRGLQVDNTG-----VPTSSPTTAPIADGTL 288
+ +C V IG G C +NN E+CGYDGGDCC C C SP + E G S+DC DP + C GE S D+ VP P DG +
Sbjct: 526 FENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYG--SFDCQDPNASCFGEESTGSDDYSTDDEPMSYEFVPWEETEALPTVDGAV 625
BLAST of mRNA_Ecto-sp13_S_contig7853.19121.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 1.650e-6 Identity = 31/75 (41.33%), Postives = 38/75 (50.67%), Query Frame = 1
Query: 1 VISAKYPDCDGVLNIGTGMCSPDNNNEQCGYDGGDCCWCDCNSPDCEEKGDPSYDCIDPESRCKGEGSLPIRGLQ 225
V + DC N G G C+ NNNEQCGYDGGDCC C C E G + CIDP + C + + L+
Sbjct: 51 VTEGMFEDC---FNFGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDDDVTADALE 122
BLAST of mRNA_Ecto-sp13_S_contig7853.19121.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 1.950e-6 Identity = 31/63 (49.21%), Postives = 36/63 (57.14%), Query Frame = 1
Query: 25 CDGVLNIGTGMCSPDNNNEQCGYDGGDCCWCDCNSP-----DCEEKGDPSYDCIDPESRCKGE 198
C V IG G C +NN E+CGYDGGDCC C C SP C + S+DC DP + C GE
Sbjct: 267 CGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCESPYDDDYSCSSEYG-SFDCKDPNASCFGE 328 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7853.19121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7853.19121.1 >prot_Ecto-sp13_S_contig7853.19121.1 ID=prot_Ecto-sp13_S_contig7853.19121.1|Name=mRNA_Ecto-sp13_S_contig7853.19121.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp MCSPDNNNEQCGYDGGDCCWCDCNSPDCEEKGDPSYDCIDPESRCKGEGSback to top mRNA from alignment at Ecto-sp13_S_contig7853:125..2994+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7853.19121.1 ID=mRNA_Ecto-sp13_S_contig7853.19121.1|Name=mRNA_Ecto-sp13_S_contig7853.19121.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2870bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7853:125..2994+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7853:125..2994+ >mRNA_Ecto-sp13_S_contig7853.19121.1 ID=mRNA_Ecto-sp13_S_contig7853.19121.1|Name=mRNA_Ecto-sp13_S_contig7853.19121.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7853:125..2994+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |