mRNA_Ecto-sp13_S_contig7851.19119.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7851.19119.1
Unique NamemRNA_Ecto-sp13_S_contig7851.19119.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7851.19119.1 vs. uniprot
Match: D8LCT9_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT9_ECTSI)

HSP 1 Score: 380 bits (975), Expect = 3.670e-127
Identity = 191/203 (94.09%), Postives = 196/203 (96.55%), Query Frame = 1
Query:  481 MHESAGFGASADVGRGITPNSSGGRKRQRPGGSPEDNGLGGSEGSPLPRVPLPRGPACVRFEAIDERMASTLTYEDFIETYALRGRPVVLKGGASLCFEEGNAWSREALRVEAGHKVVPVRRWVPDSVSWARLEKAGQMPLERLLSQPATGTTSGREGAAGKSIEEAAACGQIEMDGGDPLYLHDWSLPQNLGLESPLLAGKF 1089
            MHESAGFGASADVGRGITP+SSGGRKRQRPG SPEDNGLGGSEGSPLPRVPLPRGPACVRF+AIDERMASTL+YEDFIETYALRGRPVVLKGGASLCFEEGNAWSREALRVEAGHKVVPVRRWVPDSVSWARLEKAGQMPLERLLSQPAT TTSG+EGA GK   EAAACGQIEMDGGDPLYLHDWSLPQNLG+ SPLLAGKF
Sbjct:    1 MHESAGFGASADVGRGITPDSSGGRKRQRPGRSPEDNGLGGSEGSPLPRVPLPRGPACVRFQAIDERMASTLSYEDFIETYALRGRPVVLKGGASLCFEEGNAWSREALRVEAGHKVVPVRRWVPDSVSWARLEKAGQMPLERLLSQPATDTTSGQEGA-GKGTGEAAACGQIEMDGGDPLYLHDWSLPQNLGVASPLLAGKF 202          
BLAST of mRNA_Ecto-sp13_S_contig7851.19119.1 vs. uniprot
Match: A0A1W0A6P2_9STRA (Dynein heavy chain n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6P2_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.250e-9
Identity = 41/126 (32.54%), Postives = 64/126 (50.79%), Query Frame = 1
Query:  685 ASTLTYEDFIETYALRGRPVVLKGGASLCFEEGNAWSREALRVE--AGHKVVPVRRWVPDSVSWARLEKAGQMPLERLLSQPATGTTSGREGAAGKSIEEAAACGQIEMDGGDPLYLHDWSLPQNL 1056
            AS L+Y++F+  YA+R +PV++KGG SL   +   WS E+L+      +K++  +R+V DS+ WARLE+   M L + +   +T T                            LYLHD S+P +L
Sbjct:   85 ASELSYDEFMTEYAMRKQPVIIKGGVSLVLPQNKMWSLESLQTNDAIANKLITTKRYVKDSIHWARLEEGPTMTLSKYIEGLSTITKE--------------------------LYLHDHSIPLHL 184          
BLAST of mRNA_Ecto-sp13_S_contig7851.19119.1 vs. uniprot
Match: B3RNT4_TRIAD (JmjC domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RNT4_TRIAD)

HSP 1 Score: 63.2 bits (152), Expect = 2.980e-7
Identity = 37/128 (28.91%), Postives = 65/128 (50.78%), Query Frame = 1
Query:  670 IDERMASTLTYEDFIETYALRGRPVVLKGGASLCFEEGNAWSREALRVEAGHKVVPVRRWVPDSVSWARLEKAGQMPLERLLSQPATGTTSGREGAAGKSIEEAAACGQIEMDGGDPLYLHDWSLPQN 1053
            I+ R A  L++++F+  YAL+ +PV++    ++C      W+ E ++  AG +   V+R +PDSV WARLE A  M ++  ++                +++  +     ++     LYL DWSLP N
Sbjct:  172 IERRSAKDLSFKEFLSRYALQAKPVIITD--AVCNMISTPWTFEHIKNVAGDRKAAVKRLIPDSVEWARLEIARSMTVKEFVN----------------NMDSPSNFNDEQL-----LYLFDWSLPLN 276          
BLAST of mRNA_Ecto-sp13_S_contig7851.19119.1 vs. uniprot
Match: T0S9N9_SAPDV (JmjC domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0S9N9_SAPDV)

HSP 1 Score: 61.6 bits (148), Expect = 8.820e-7
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:  685 ASTLTYEDFIETYALRGRPVVLKGGASLCFEEGNAWSREALRVEAG--HKVVPVRRWVPDSVSWARLEKAGQMPL 903
            A  L+Y+ F+  YAL  RPVVL+GGA L   +   WS  +L   A    K +P +R+V DSV WARLE    MPL
Sbjct:  129 AKDLSYDQFLAEYALPKRPVVLRGGAHLVLTK-KMWSLASLGANAAVASKPMPTKRYVHDSVQWARLEDGPTMPL 202          
BLAST of mRNA_Ecto-sp13_S_contig7851.19119.1 vs. uniprot
Match: A0A1V9ZJN2_9STRA (JmjC domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJN2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.400e-5
Identity = 34/87 (39.08%), Postives = 46/87 (52.87%), Query Frame = 1
Query:  661 FEAIDERMAST----LTYEDFIETYALRGRPVVLKGGASLCFEEGNAWSREALRVE--AGHKVVPVRRWVPDSVSWARLEKAGQMPL 903
            FE   E +A T    +   D    YA+  RPVVLKGGA+L       W+  +L+    A  K VP +R++ DSV WARLE+   + L
Sbjct:  115 FETPSEPVAMTAVPVVDVRDLPVEYAMEKRPVVLKGGAALVMPADKMWTLASLQTHPTASLKRVPTKRYIADSVRWARLEEGPVLAL 201          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7851.19119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LCT9_ECTSI3.670e-12794.09JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A1W0A6P2_9STRA1.250e-932.54Dynein heavy chain n=1 Tax=Thraustotheca clavata T... [more]
B3RNT4_TRIAD2.980e-728.91JmjC domain-containing protein n=2 Tax=Trichoplax ... [more]
T0S9N9_SAPDV8.820e-746.67JmjC domain-containing protein n=2 Tax=Saprolegnia... [more]
A0A1V9ZJN2_9STRA8.400e-539.08JmjC domain-containing protein n=1 Tax=Achlya hypo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7851contigEcto-sp13_S_contig7851:3107..7224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score383.3
Seed ortholog evalue1.3e-103
Seed eggNOG ortholog2880.D8LCT9
Model size1089
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Cupin-like domain
EggNOG OGsKOG2131@1,KOG2131@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_006870.3
Cds size1089
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7851.19119.1prot_Ecto-sp13_S_contig7851.19119.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7851 3107..7224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464056.2586334-CDS-Ecto-sp13_S_contig7851:3106..32641681464056.2586334-CDS-Ecto-sp13_S_contig7851:3106..3264Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7851 3107..3264 +
1681464056.2773063-CDS-Ecto-sp13_S_contig7851:4736..48341681464056.2773063-CDS-Ecto-sp13_S_contig7851:4736..4834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7851 4737..4834 +
1681464056.287422-CDS-Ecto-sp13_S_contig7851:5336..54181681464056.287422-CDS-Ecto-sp13_S_contig7851:5336..5418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7851 5337..5418 +
1681464056.2974997-CDS-Ecto-sp13_S_contig7851:5593..59351681464056.2974997-CDS-Ecto-sp13_S_contig7851:5593..5935Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7851 5594..5935 +
1681464056.3077924-CDS-Ecto-sp13_S_contig7851:6458..66061681464056.3077924-CDS-Ecto-sp13_S_contig7851:6458..6606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7851 6459..6606 +
1681464056.3177748-CDS-Ecto-sp13_S_contig7851:6963..72241681464056.3177748-CDS-Ecto-sp13_S_contig7851:6963..7224Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7851 6964..7224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7851.19119.1

>prot_Ecto-sp13_S_contig7851.19119.1 ID=prot_Ecto-sp13_S_contig7851.19119.1|Name=mRNA_Ecto-sp13_S_contig7851.19119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=363bp
MISSGTFPEIARWWRREKNAARITPQVPQDDDRGFGGTPVSTDPRTLLLG
VTRRTKDGLAFIRGRVRSLRKQLRVDDDPQSRLMLALYLEKMGDDHLEEA
LAEMDVALARMLGRRSANSDNGWSKSERSRLAKAVDSLRMRRRALLEARD
SRPTASPSTAMHESAGFGASADVGRGITPNSSGGRKRQRPGGSPEDNGLG
GSEGSPLPRVPLPRGPACVRFEAIDERMASTLTYEDFIETYALRGRPVVL
KGGASLCFEEGNAWSREALRVEAGHKVVPVRRWVPDSVSWARLEKAGQMP
LERLLSQPATGTTSGREGAAGKSIEEAAACGQIEMDGGDPLYLHDWSLPQ
NLGLESPLLAGKF
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mRNA from alignment at Ecto-sp13_S_contig7851:3107..7224+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7851.19119.1 ID=mRNA_Ecto-sp13_S_contig7851.19119.1|Name=mRNA_Ecto-sp13_S_contig7851.19119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4118bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7851:3107..7224+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCTCGAGCGGTACCTTCCCCGAGATAGCGAGGTGGTGGAGGAGAGA AAAGAACGCTGCTAGGATAACACCTCAAGTACCCCAGGACGATGATCGTG GTTTCGGTGGAACGCCAGTGTCAACCGACCCTAGGACTCTCCTGCTTGGC GTAACCCGGTGAGTGAGTTTTCATTATGTGCAGTACGCACAGTGTGCAGC TGTGCGGCATATGGAAGCAGCAATGGATTGCACGGGTATGACTTTTCGTT GAAGCGGCTCCAGGCCCGCAACACTGTGCTTTTTGTGGCGCGCCGATTCT ATCGGCAGCAACAGGCGGCTAGCAATCTCTTGAAATGAGTGCAGAAGGTG GATTATCTAACGGTGGATATCAGACTCCCCCCAGAGACAGTTTTATGTGA AAAATGAGTAAATAATGAAAATATACTGGTGTGGGCCAGGGTGATATGTC GCTGAGTCGTTTGGGTTGTGGTGTAATTCCCCAACCGTGTGGTGGATGGG GCGGGGGGTGTGCATTTCCAGGAGGGGCGATAATAACGTCCCTTTGATCT GAAGCACGTACACAGAGAAATGGATGAACTAAACGCGTTATCGCAAAGCA AACCTGAGAACAAAAGTATCGGTACTAGAGGCTTGGAATGAACGGGAGCT CAGCAGCAAGGCAGTTATGGAAAATCCACCAAAAATTCAGCCCTCGTCGA ACCGCAACGGCTGACTGACCTTCAGCAGATACACATCACCCGCAATTACA GTGTACAGCAGTGGGACCTCCAGTTCTGGTCGAGGCTGGGGGTTCTTAGT TACGTAGGTCGCATAGGCTACAAATGACCGCTTGATAGGTTTCGATGTAG GGTTCTAAACATTCCTCACAAAAAACGCTGGCGTTCTTATGTTATTGGCA AGCATGAAGTTCTCAAGTGCCTAACTCATGAGTTCGCGCACTGACGGTAG TGCAAAGCAATTTGTTGCAAGTTGTTGCTTACGGTATGTTTGACAGGATT CCTTGCTTCAAATCTGGCGGTATAACACAACGTCAGTGGACTCAGCAGCA CCACCAATCTGAAAGAACGACATCTTGGCCGCAGAAGCCTCACATGGGAG CCTTGGCATTAACAGCGGCAGGCAGAGGACTATCAGTCGGAGAAAGATAC AGGAGATTGCGGCTCGGTGCTGTCGTGAGCCACCCCTTCATAAGACGTTT GGTAGTTCGTCCACCTTAATCCTGCTGTTGGTGCGTGTGGTCAGGTCATA GCCTGTCACGCTCTCCTCTTACTTTGCACCTGACTCTCTTCCCCATTGGC TCTGCATGATTCCAAACCAATTTGCGAGCCAAGAATAGGCCAACTGAGTT TGATGATCTGTTTCTGCCAAAAGAGTTATTCCGTTGCTCTTTCTCGGAGT GTTTCTGCACTTTAAGTTCAAAGGTGTTGACAAAAATACATTCACATGTT CACACTTGTCCACACGTGTGCGTGGGACCCCTACACTCTTGTGCCCCGTC GTCCCCACCCGTCATGTAGTCTTTGCTGTCTATCCGCCTGCTTGTCGTCT ATCTGTCTGACTGTAGTCTCTCTGGCTGCCTGTCTGTTCGTCTGTCGATC CGTCCGTCTGTGTGTCAATGCTGGGCGTAGCAGAACCAAGGACGGATTGG CGTTCATACGGGGGAGGGTACGCAGCCTGCGGAAACAGCTCAGGGTCGAT GATGATCCGCAGAGCCGACTCATGCTTGGTGAGAGCATGGAACACCGCAG GAGATGTGTCGGTGGGGACCCATGGTTCGAAAACCAAGATGCTTCAGCTA TCCCTTACGAATTTGTGCCCGCGTTCGGCTGCTGGAGTAGGTCACTGGGT CGACCATTTTCCCAAAGCTTGCCGCCAAGACCAGTGTTGCTCATGTGCCG TCTGCACACTCACAGATCAATCGTGTGGCGTGCCCAGTGCGGTAGGCTTC AGTTCCCCTCCCATGATGGTGTGCCGGACTATGCACGTGCAGTTGTCTCT GTTTCCCAGCAGTTGGAAGGATCCGAGAATACTGATGGTGGTTTGGTGTC TCCCACAAAGTCCCGCAGGGCTCTCTTTGTGTGTGGTAGTACACAGGTTG CTGCTCCTGCACATTTCAACTGATTCGCAATTGTGTTGGTTCACCCAAAT AATCGTGAGTCTAGCATTTCCGCGCGAGATCGATGGGGTAGCCCGACGCC CTTCCCCCCCTGCTCATCCATCCGGTACAGCGCTGTATCTAGAGAAGATG GGCGATGACCATCTCGAAGAAGCGCTGGCGGAAATGGACGTTGCCTTGGC GCGAATGCTGGGGTGAGAACAGATTCGTGCATGACTGAGGTACCGCTCGC GCGGGCATCCTTGACCGTTCTGGAGTGTGGGAAACCAAGGAGGCCTTCCC CAGGTCAATCATTTCGTATGTTCGGAAACGTCCTATCAATACCCTGACCT GAATATCATCATACATCCCCGATTCCGACGGTGGCAGGCGTAGAAGCGCC AACAGCGATAATGGATGGTCTAAGAGTGAGCGTTCGCGGCTAGCGAAAGC CGTTGATTCTCTTCGAATGCGACGACGTGCCTTGCTGGAAGCGCGAGATT CACGGCCGACGGCGTCGCCCTCGACCGCGATGCACGAGTCGGCAGGGTTT GGCGCGTCGGCGGACGTAGGCCGTGGCATCACACCGAACTCAAGCGGCGG TCGGAAGAGACAGCGTCCGGGGGGATCGCCGGAAGACAATGGCCTCGGCG GAAGTGAGGGGTCGCCGCTACCGCGGGTGCCGCTACCGCGTGGTCCTGCC TGTGTGCGTTTCGAGGCTATTGATGAAAGGTAATTGCCCGCTTGAGTCCG GTATCCGGCAAGTTGAGCACAAGCGTGGCTTGATATCGCAAGGAGGATGC GACTATTCGAGTCAGGAACGCTTTGCCATGGAAGGGGTTTTGTAGGGACT GTTCCGTAGTGGAGCCGTCCGGTTATGGCGTACATTTGTTGTTGTCATTA GTGGGTCAGGTAGTAGCCTGCGCCCTGCGCGATTGGTGTTGGTATCAGCC CCATATCATCGTGGAAAATCGGCTTCAACCGCTGGGACTTATCTCTGGAG TATAAACCAGACTCCAATGGCCAGCAGTCATCCGAGGCTTCTTCAGAATA TCCCTCGCGATACTCGGATAGATATCCCGGGGAGGGACGCAGTCTTCCCT TGGGCTCATTCCAACGAAAAGTTCAACACTGCCTGGGGGCTACCACAACA CCTTCCAAACCCTGGGTGCCCGCTTCTGTGGTGACCTCTCCTTGGCGTGT TTTTGCTCTCGTTTGTGCGGCGCTTGCCTGCTGTTCACATCATTGCACGC AGAATGGCGTCGACTCTAACCTACGAAGACTTCATCGAGACATACGCGCT ACGTGGGCGCCCCGTGGTCCTCAAAGGTGGTGCGAGCCTGTGCTTTGAAG AGGGCAACGCTTGGAGTCGAGAAGCCTTGCGGGTGGAAGCAGGGCACAAG GTAGCTGTGGTGTATAAAGTGTCGTATCGTACACATATGTAGGACTTGAG TGAGGGGTTGCTGGCTGAAAAACTCTCTCGCTGGCGAGTGCCAGCTGCTG CTGTACCGTATGGCCGCCAGTTGTGTGTGCGTGATCCGTCTTGCTCAACG AAGGGAAGTTGCAGCTTTTGTCTGCTGTGGAGGTTTAATTAATTTTTTTG GCGTCTATGGCATATTTGTTCGTAGATAGTCGAACAAAGGTCAGCGGCAG CACAGGAACGCACGCGTTGGCAACCCAATCATATGCTGGGAATGAATACA TTGCTCGGTGACCTCAGCAGTGTTTTGGATGGCGCCGGGTGACGAATCGC GGCGCAGGTAGTGCCGGTTCGGCGATGGGTGCCCGACTCAGTCAGCTGGG CGAGGCTGGAGAAGGCCGGCCAGATGCCACTCGAACGACTCCTTTCGCAA CCTGCGACGGGCACCACGAGCGGACGAGAAGGCGCTGCTGGGAAAAGCAT CGAAGAGGCTGCCGCATGCGGTCAAATTGAGATGGACGGGGGCGACCCGT TGTACCTGCACGATTGGTCCCTTCCGCAGAACCTGGGTCTGGAAAGTCCG CTCCTGGCGGGGAAATTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7851:3107..7224+

>mRNA_Ecto-sp13_S_contig7851.19119.1 ID=mRNA_Ecto-sp13_S_contig7851.19119.1|Name=mRNA_Ecto-sp13_S_contig7851.19119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1089bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7851:3107..7224+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCTCGAGCGGTACCTTCCCCGAGATAGCGAGGTGGTGGAGGAGAGA
AAAGAACGCTGCTAGGATAACACCTCAAGTACCCCAGGACGATGATCGTG
GTTTCGGTGGAACGCCAGTGTCAACCGACCCTAGGACTCTCCTGCTTGGC
GTAACCCGCAGAACCAAGGACGGATTGGCGTTCATACGGGGGAGGGTACG
CAGCCTGCGGAAACAGCTCAGGGTCGATGATGATCCGCAGAGCCGACTCA
TGCTTGCGCTGTATCTAGAGAAGATGGGCGATGACCATCTCGAAGAAGCG
CTGGCGGAAATGGACGTTGCCTTGGCGCGAATGCTGGGGCGTAGAAGCGC
CAACAGCGATAATGGATGGTCTAAGAGTGAGCGTTCGCGGCTAGCGAAAG
CCGTTGATTCTCTTCGAATGCGACGACGTGCCTTGCTGGAAGCGCGAGAT
TCACGGCCGACGGCGTCGCCCTCGACCGCGATGCACGAGTCGGCAGGGTT
TGGCGCGTCGGCGGACGTAGGCCGTGGCATCACACCGAACTCAAGCGGCG
GTCGGAAGAGACAGCGTCCGGGGGGATCGCCGGAAGACAATGGCCTCGGC
GGAAGTGAGGGGTCGCCGCTACCGCGGGTGCCGCTACCGCGTGGTCCTGC
CTGTGTGCGTTTCGAGGCTATTGATGAAAGAATGGCGTCGACTCTAACCT
ACGAAGACTTCATCGAGACATACGCGCTACGTGGGCGCCCCGTGGTCCTC
AAAGGTGGTGCGAGCCTGTGCTTTGAAGAGGGCAACGCTTGGAGTCGAGA
AGCCTTGCGGGTGGAAGCAGGGCACAAGGTAGTGCCGGTTCGGCGATGGG
TGCCCGACTCAGTCAGCTGGGCGAGGCTGGAGAAGGCCGGCCAGATGCCA
CTCGAACGACTCCTTTCGCAACCTGCGACGGGCACCACGAGCGGACGAGA
AGGCGCTGCTGGGAAAAGCATCGAAGAGGCTGCCGCATGCGGTCAAATTG
AGATGGACGGGGGCGACCCGTTGTACCTGCACGATTGGTCCCTTCCGCAG
AACCTGGGTCTGGAAAGTCCGCTCCTGGCGGGGAAATTT
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