mRNA_Ecto-sp13_S_contig78507.19118.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78507.19118.1
Unique NamemRNA_Ecto-sp13_S_contig78507.19118.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78507.19118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78507contigEcto-sp13_S_contig78507:62..628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size567
Hectar predicted targeting categorymitochondrion
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464056.2034307-UTR-Ecto-sp13_S_contig78507:61..801681464056.2034307-UTR-Ecto-sp13_S_contig78507:61..80Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig78507 62..80 +
1681464056.2265394-UTR-Ecto-sp13_S_contig78507:395..6281681464056.2265394-UTR-Ecto-sp13_S_contig78507:395..628Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig78507 396..628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464056.2148204-CDS-Ecto-sp13_S_contig78507:80..3951681464056.2148204-CDS-Ecto-sp13_S_contig78507:80..395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78507 81..395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78507.19118.1prot_Ecto-sp13_S_contig78507.19118.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78507 81..395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78507.19118.1

>prot_Ecto-sp13_S_contig78507.19118.1 ID=prot_Ecto-sp13_S_contig78507.19118.1|Name=mRNA_Ecto-sp13_S_contig78507.19118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MVSVPGRKSTSATAKPAVRSAFQQAGRRRHLRLCMSAETGPQRKGLSQIN
LLIGNTGVHHTTPTLEMPDVRSTTKPTRPAHQPSTKNGNDFIYSSWLWQR
VGSL*
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mRNA from alignment at Ecto-sp13_S_contig78507:62..628+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78507.19118.1 ID=mRNA_Ecto-sp13_S_contig78507.19118.1|Name=mRNA_Ecto-sp13_S_contig78507.19118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78507:62..628+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTACAGCATTAGGATTGGAATGGTTTCAGTGCCCGGCCGCAAGTCCACCA
GCGCCACTGCGAAGCCTGCTGTTCGTTCGGCCTTTCAACAAGCCGGAAGA
AGAAGACACCTCCGATTATGCATGAGCGCAGAAACCGGGCCCCAGCGCAA
AGGGCTGTCACAAATCAACCTATTAATAGGGAACACAGGGGTTCACCACA
CGACCCCCACGTTGGAGATGCCCGATGTTCGAAGTACAACCAAGCCAACA
AGACCAGCGCACCAGCCATCCACAAAAAACGGCAATGACTTTATTTACAG
CAGTTGGTTGTGGCAAAGGGTTGGAAGCCTATGACCATCAGCGAACTGCG
TGCCACAAAGGAAAGGAAAGGCTGAATCACATCCACCAATCAAATCGCAC
TTTCAGGGTATCTCCACTCCATCTGATCATGCACAACGGTTACATGATAT
GAGGAAAACGATCGAAAAAAGAAGAGACAAGCTACAAAAAAAACTTTCCT
AGTCATCACCGCCGCCGAAGAGAGTGTACATTTTCTTTAGCGTCCCGACG
ATCCCTCCCCCGGTCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78507:62..628+

>mRNA_Ecto-sp13_S_contig78507.19118.1 ID=mRNA_Ecto-sp13_S_contig78507.19118.1|Name=mRNA_Ecto-sp13_S_contig78507.19118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78507:62..628+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTCAGTGCCCGGCCGCAAGTCCACCAGCGCCACTGCGAAGCCTGC
TGTTCGTTCGGCCTTTCAACAAGCCGGAAGAAGAAGACACCTCCGATTAT
GCATGAGCGCAGAAACCGGGCCCCAGCGCAAAGGGCTGTCACAAATCAAC
CTATTAATAGGGAACACAGGGGTTCACCACACGACCCCCACGTTGGAGAT
GCCCGATGTTCGAAGTACAACCAAGCCAACAAGACCAGCGCACCAGCCAT
CCACAAAAAACGGCAATGACTTTATTTACAGCAGTTGGTTGTGGCAAAGG
GTTGGAAGCCTATGA
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