mRNA_Ecto-sp13_S_contig7850.19117.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7850.19117.1
Unique NamemRNA_Ecto-sp13_S_contig7850.19117.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7850.19117.1 vs. uniprot
Match: D8LTU0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU0_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 5.090e-37
Identity = 109/168 (64.88%), Postives = 114/168 (67.86%), Query Frame = 3 
Query:  192 SSSGSSTMQVVPQHYVSLMGSRRTSAEDFLSLLQDSEELQAREVPSMQDEEPDDSSQXXXXXXXXXQHALLPPPGRVPQNGGGGSSVAAHPTSTPHPPQEATPRAAXXSAPAAPTXXXXXAGDKALASEGGVPSAAGATAAETSGGEGRWTGDISSNFFSGPTSFSKG 695
            SSSGSSTMQVVPQHY+SLMGSRRTSAEDFLSLLQDSEELQAREVPSMQDEEP+DSS  XXXXXXXXQHALLPPPGRVPQNG                         XXSAPAA   XXXX                     E SGG+GRWTGD+SS+FFSGPT  SKG
Sbjct:   11 SSSGSSTMQVVPQHYLSLMGSRRTSAEDFLSLLQDSEELQAREVPSMQDEEPEDSS--XXXXXXXXQHALLPPPGRVPQNGXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPAARAAXXXXXXXXXXXXXXXXXXXXXXXXXEASGGDGRWTGDVSSSFFSGPTPLSKG 176
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BLAST of mRNA_Ecto-sp13_S_contig7850.19117.1 vs. uniprot
Match: A0A6H5K231_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K231_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.510e-24
Identity = 96/160 (60.00%), Postives = 101/160 (63.12%), Query Frame = 3 
Query:  213 MQVVPQHYVSLMGSRRTSAEDFLSLLQDSEELQAREVPSMQDEEPDDSSQXXXXXXXXXQHALLPPPGRVPQNGGGGSSVAAHPTSTPHPPQEATPRAAXXSAPAAPTXXXXXAGDKALASEGGVPSAAGATAAETSGGEGRWTGDISSNFFSGPTSFSK 692
            + VVPQH++SLMG+RRTSAEDFLSL      LQAREVPSMQDEE DDSS XXXXXXXXXQHALLPPPGRVPQNG                         XX       XXXXX           VPSAAGAT AE SGG+GRWT DISS FFSG T  SK
Sbjct:  459 LPVVPQHFLSLMGARRTSAEDFLSL------LQAREVPSMQDEESDDSSXXXXXXXXXXQHALLPPPGRVPQNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPSAAGATEAEASGGDGRWTDDISSTFFSGSTPLSK 612
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7850.19117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTU0_ECTSI5.090e-3764.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K231_9PHAE5.510e-2460.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7850contigEcto-sp13_S_contig7850:606..2415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size702
Hectar predicted targeting categoryother localisation
Exons3
Cds size609
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464056.1342554-UTR-Ecto-sp13_S_contig7850:605..6971681464056.1342554-UTR-Ecto-sp13_S_contig7850:605..697Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7850 606..697 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464056.1467366-CDS-Ecto-sp13_S_contig7850:697..7851681464056.1467366-CDS-Ecto-sp13_S_contig7850:697..785Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7850 698..785 +
1681464056.1579683-CDS-Ecto-sp13_S_contig7850:1123..12361681464056.1579683-CDS-Ecto-sp13_S_contig7850:1123..1236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7850 1124..1236 +
1681464056.1731927-CDS-Ecto-sp13_S_contig7850:2007..24151681464056.1731927-CDS-Ecto-sp13_S_contig7850:2007..2415Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7850 2008..2415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7850.19117.1prot_Ecto-sp13_S_contig7850.19117.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7850 698..2415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7850.19117.1

>prot_Ecto-sp13_S_contig7850.19117.1 ID=prot_Ecto-sp13_S_contig7850.19117.1|Name=mRNA_Ecto-sp13_S_contig7850.19117.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=203bp
MVLFLVKVESMHQLQQQHVLGGGQSLSAGGANGSSSGSSTMQVVPQHYVS
LMGSRRTSAEDFLSLLQDSEELQAREVPSMQDEEPDDSSQSQPQPQPQPQ
HALLPPPGRVPQNGGGGSSVAAHPTSTPHPPQEATPRAAAASAPAAPTAT
APAAGDKALASEGGVPSAAGATAAETSGGEGRWTGDISSNFFSGPTSFSK
GGG
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mRNA from alignment at Ecto-sp13_S_contig7850:606..2415+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7850.19117.1 ID=mRNA_Ecto-sp13_S_contig7850.19117.1|Name=mRNA_Ecto-sp13_S_contig7850.19117.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1810bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7850:606..2415+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTGGATTCGCTGTTTCATCCAACTGAACCCTGTCCTCCCGCCAACTAA
CTTGCTGTTGGTCGTTGGTTGTCTGCCGCGTCTGCTCTGCTGATGGTCCT
TTTCCTTGTCAAGGTGGAGAGCATGCACCAGCTTCAGCAGCAGCATGTGC
TGGGTGGCGGGCAATCCCTTAGCGCTGGAGGTACTGACTTTTAAGCGTGT
TACGTCTTAAGAGAGTATTGCGAGGGACTTATCGAGAGGCGCAGCGTTAT
GTTTTTGTACCGGCCCCGCTTGCAGCAGACCTCGTCGGGCGGGGCAGGAT
ATGGTACCGTAAGAACATATAGACCCTACCTTGCCTTAACCACACACCCC
GTAAACACTTACTGAGCTGCTACAAAATGCGGTCGTCATCGTCTCCCTGT
TACTGCATCGTGGTGCTGCGACGAAATATATATCGCGCAATATCTTTAGG
GCCCAGCAAACGTCTAGCTTCCCTCCCCCCCCCACCCGCTCTCGCACCTT
GTTTGCAATCATCGCCAGGAGCGAACGGCAGCAGCAGTGGCAGCAGCACA
ATGCAGGTCGTGCCGCAGCACTACGTGTCCTTGATGGGTTCGAGGAGAAC
ATCGGCGGAAGACTTCCTGTCGCTCCTACAGGTATCTACACCTTGTCCTG
TATACCCTGACGAGCGTGGCCGTCCTTTAACCTTGTTTGCTCTTTCTTTC
CGCTATGCGCCTGCGTGTGCTCCTCGCATCATGTGTCTGGTGCACGTTTC
CGTGCTTGCACCATGCTTTGTTTCTTGATTTGTCGGGGAAGTATGTAGCG
GGTGCCAATCTGTTTTTTTCATACCGCCCGAAGTTGGGTTTGTTAAATAC
GTAAGGAAAAAAAATCTCCCCCGGCGAGTAGGAAAAGGAAGACGGCGGAA
TCGGCCGCCCTCACAGTCGTTTGGGTTCGTCTGCTTCGTCGACCCCCGGT
TCTGGAGTACGCGTGGTCAATACTACAGCCGCTAAGGCATGCAAACATGA
GTCGTCCCCCCCCCGCCCGTAGAAGGAAGGTGTGGGAGACGCAGGCATGG
AATAGCCAGGAGAAGACGGTAGCTGTACTGGGCACAGGAAGCGGGTTGAA
ACGCGGGAAGTTGTATGGATAGGATAGATGGACTAGGGAAAACGCTTCGT
GCCACCTTTGGTGAAGTAGGAAGGAACGATTGGCCATCGGTGATCGGTCC
TGTGAGAATGATGTTCCGTCCTCTCGAGGACGCGTGATCAATGGTCTAGT
CGCTAAGGCATGCAAAACATGAGAGTACACCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCACCCCCACGCGCCCCGGGGGCGGCCCCCCCATGCTGGCGTACCCGA
AGGACTCGGAAGAGCTGCAGGCGCGCGAGGTGCCCTCGATGCAGGACGAG
GAACCGGACGACAGCAGCCAATCGCAGCCACAGCCGCAGCCGCAGCCGCA
GCACGCTTTGCTCCCGCCACCGGGCCGCGTTCCGCAAAACGGTGGCGGCG
GAAGCAGCGTTGCCGCCCACCCCACATCGACACCCCACCCGCCACAAGAA
GCGACGCCCCGCGCAGCGGCGGCTTCGGCGCCTGCGGCCCCTACGGCGAC
GGCTCCCGCTGCCGGCGACAAAGCTTTGGCTTCGGAGGGAGGCGTGCCGT
CGGCAGCAGGAGCCACGGCGGCAGAGACGAGCGGCGGCGAAGGACGGTGG
ACGGGCGACATATCATCGAACTTTTTCTCGGGCCCGACGTCATTCTCGAA
AGGCGGCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7850:606..2415+

>mRNA_Ecto-sp13_S_contig7850.19117.1 ID=mRNA_Ecto-sp13_S_contig7850.19117.1|Name=mRNA_Ecto-sp13_S_contig7850.19117.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7850:606..2415+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCCTTTTCCTTGTCAAGGTGGAGAGCATGCACCAGCTTCAGCAGCA
GCATGTGCTGGGTGGCGGGCAATCCCTTAGCGCTGGAGGAGCGAACGGCA
GCAGCAGTGGCAGCAGCACAATGCAGGTCGTGCCGCAGCACTACGTGTCC
TTGATGGGTTCGAGGAGAACATCGGCGGAAGACTTCCTGTCGCTCCTACA
GGACTCGGAAGAGCTGCAGGCGCGCGAGGTGCCCTCGATGCAGGACGAGG
AACCGGACGACAGCAGCCAATCGCAGCCACAGCCGCAGCCGCAGCCGCAG
CACGCTTTGCTCCCGCCACCGGGCCGCGTTCCGCAAAACGGTGGCGGCGG
AAGCAGCGTTGCCGCCCACCCCACATCGACACCCCACCCGCCACAAGAAG
CGACGCCCCGCGCAGCGGCGGCTTCGGCGCCTGCGGCCCCTACGGCGACG
GCTCCCGCTGCCGGCGACAAAGCTTTGGCTTCGGAGGGAGGCGTGCCGTC
GGCAGCAGGAGCCACGGCGGCAGAGACGAGCGGCGGCGAAGGACGGTGGA
CGGGCGACATATCATCGAACTTTTTCTCGGGCCCGACGTCATTCTCGAAA
GGCGGCGGC
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