mRNA_Ecto-sp13_S_contig7847.19111.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7847.19111.1
Unique NamemRNA_Ecto-sp13_S_contig7847.19111.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7847.19111.1 vs. uniprot
Match: D8LGF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF7_ECTSI)

HSP 1 Score: 739 bits (1908), Expect = 5.780e-257
Identity = 533/617 (86.39%), Postives = 541/617 (87.68%), Query Frame = 1 
Query:    1 PRAPPPRTYKSLRATFRQPKQALTTDTVDIAAXXXXXXXXXXXXXXXXXXXEEGASPVDSEGNPTGGTGGGFSXXDVEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------DFTPDPRMRKGETACRKLRVESAAPIVRLSRASPPTSEVLAGEEIEEVAQFLGGGLSFDGDADSTECLLVLELANDSAFPVFPWRSHRAKQKQQGRHRRQLTAGTIGGPEDXXXXXXXQVVEIRGGSRRCLSLRVPRLRVRPEGRSSGRDEDEPRSPLSLRPLFDWEKSLASHILEELSLRWSTAREEALAAASLGTAAGGVVVPDPLTGERTAAAARGGEEGWRSGRRGCVRIALDQVGEDGSCHRISSAGXXXXXXXXXXXXXXXXXXXXXXXXXGSRPSQPRHPEAVPECLLGVLLPPVRLSCLPCAFVPGVAGGGGG*GVGWSAAGAKGIFGAGEGVPRVGIDEAGRVQVEGGRIREVEGAWAAQTTVDSFLPVSLVVHNSSRWPIDVIVEVTSTSEGREGGGSVYWGNEDEDDSGRVMWSGMPR 1812
            PRAPPPRTYKSLRATFRQPKQALTTDTVDIAAXXXXXXXXXXXXXXXXXX EEG SPVDSEGNP  GTG GF   DVEV           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             +FTPDPRMRKGETACRKLRVESAAP+VRLSRASPPTSEVLAGEEI EVAQFLGGGLSFDGDADSTECLLVLELANDSAFPVFPWRSHRAKQ+QQGRHRRQLTAGTIGGPED       QVVEI  GSRRCLSLRVPRLRVRPEGRSSGRD DEPRSPLSLRPLFDWEKSLASHILEELSLRWSTAREEALAAASLGTA+GG VVPDP TGE TA+A  GGEEGWRSGRRGCVRIALDQVGEDGSCHR S   XXXXXXXXXX                SRPSQPRHPEAVPECLLGVLLPPVRLSCLPCAFVP VAGGGGG  VGWSAAGAKG+FGAGEG PRVGIDEAGRVQVEGG IR+VEGAWAAQTTVDSFLPVSLVVHNSSRWPIDV+VEVTSTSEGRE GGSV WGNEDEDDSG VMWSGMPR
Sbjct:  325 PRAPPPRTYKSLRATFRQPKQALTTDTVDIAAXXXXXXXXXXXXXXXXXXEEEGGSPVDSEGNPAEGTGVGFGGGDVEVIGGGTGVSSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFTPDPRMRKGETACRKLRVESAAPVVRLSRASPPTSEVLAGEEIVEVAQFLGGGLSFDGDADSTECLLVLELANDSAFPVFPWRSHRAKQQQQGRHRRQLTAGTIGGPEDGGGLGRGQVVEIPRGSRRCLSLRVPRLRVRPEGRSSGRDGDEPRSPLSLRPLFDWEKSLASHILEELSLRWSTAREEALAAASLGTASGGGVVPDPFTGEGTASAG-GGEEGWRSGRRGCVRIALDQVGEDGSCHRSSXXXXXXXXXXXXXAGV-------------SRPSQPRHPEAVPECLLGVLLPPVRLSCLPCAFVPSVAGGGGG--VGWSAAGAKGLFGAGEGAPRVGIDEAGRVQVEGGGIRDVEGAWAAQTTVDSFLPVSLVVHNSSRWPIDVLVEVTSTSEGREEGGSVCWGNEDEDDSGHVMWSGMPR 925
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7847.19111.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE)

HSP 1 Score: 603 bits (1554), Expect = 1.460e-194
Identity = 486/763 (63.70%), Postives = 493/763 (64.61%), Query Frame = 1 
Query:    1 PRAPPPRTYKSLRATFRQPKQALTTDTVDIAAXXXXXXXXXXXXXXXXXXXEEGASPVDSEGNPTGGTGGGFSXXDVEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFTPDPRMRKGETACRKLRVESAAPIVRLSRASPPTSEVLAGEEIEEV---------------------------------------------------------------------------------------------------------------------------------------------------------------AQFLGGGLSFDGDADSTECLLVLELANDSAFPVFPWRSHRAKQKQQGRHRRQLTAGTIGGPEDXXXXXXXQVVEIRGGSRRCLSLRVPRLRVRPEGRSSGRDEDEPRSPLSLRPLFDWEKSLASHILEELSLRWSTAREEALAAASLGTAAGGVVVPDPLTGERTAAAARGGEEGWRSGRRGCVRIALDQVGEDGSCHRISSAGXXXXXXXXXXXXXXXXXXXXXXXXXGSRPSQPRHPEAVPECLLGVLLPPVRLSCLPCAFVPGVAGGGGG*GVGWSAAGAKGIFGAGEGVPRVGIDEAGRVQVEGGRIREVEGAWAAQTTVDSFLPVSLVVHNSSRWPIDVIVEVTSTSEGREGGGSVYWGNEDEDDSGRVMWSGMPR 1812
            PRAPPPRTYKSLRATFRQPKQALTTDTVDIAAXXXXXXXXXXXXXXXXXX EEG SPVDSEGNP  GTG GF   DVEV         XXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+F PDPRM KGETACRKLRVESAAP+VRLSRASPPTSEVLAGEEIEEV                                                                                                                                                               AQFLGGGL FD DADSTECLLVLELANDSAFPVFPWRSHRAKQKQQGRHRRQLTAGTIGGPED       QVVEI GGSRRCLSLRVPRLRVRPEGRS GRDEDEPRSPLSLRPLFDWEKSLASHILEELSLRWSTAREEALAAASLGTAAGG VVP+PLTGE TAAA  GGE           R+                                            SRPSQPRHPEAVPECL+GVLLPPVRLSCLPCAFVPGVAG     GV  SA GA G+FGAGEGVPRVGIDEAGRVQVEGG +REVEGAWAAQTTVDSFLPVSLVVHNSSRWPIDVIVEVTSTSEGRE  GSVYWGN DEDDSG VMWSGMPR
Sbjct:  928 PRAPPPRTYKSLRATFRQPKQALTTDTVDIAAXXXXXXXXXXXXXXXXXXEEEGGSPVDSEGNPAEGTGVGFGGGDVEVIGGGTGVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXASPHGREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFVPDPRMWKGETACRKLRVESAAPVVRLSRASPPTSEVLAGEEIEEVLELVNQGGPSVGVMEVWTRPCRSTKKPLASAMSLLFSLADSAXXXXXXXXXXXXXXXEFGGEGGSGSAMSSLGLDVGLAXXXXXXXXXXXXXXXXXVVVPGGAVRLALKLRAGQAANRDVVTEVLVKYSEKEGAPFHRQLRLPLRLTIRGGLRVCSLRVAQFLGGGLRFDVDADSTECLLVLELANDSAFPVFPWRSHRAKQKQQGRHRRQLTAGTIGGPEDGGGLGRGQVVEIPGGSRRCLSLRVPRLRVRPEGRSLGRDEDEPRSPLSLRPLFDWEKSLASHILEELSLRWSTAREEALAAASLGTAAGGGVVPNPLTGEWTAAAGGGGEG---------ARV--------------------------------------------SRPSQPRHPEAVPECLVGVLLPPVRLSCLPCAFVPGVAGVAAVGGVXCSAVGANGLFGAGEGVPRVGIDEAGRVQVEGGGLREVEGAWAAQTTVDSFLPVSLVVHNSSRWPIDVIVEVTSTSEGREEEGSVYWGNADEDDSGHVMWSGMPR 1637
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7847.19111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGF7_ECTSI5.780e-25786.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9H9_9PHAE1.460e-19463.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7847contigEcto-sp13_S_contig7847:156..6906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1812
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_003870.1
Cds size945
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7847.19111.1prot_Ecto-sp13_S_contig7847.19111.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7847 1609..5824 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464055.5112731-UTR-Ecto-sp13_S_contig7847:155..3151681464055.5112731-UTR-Ecto-sp13_S_contig7847:155..315Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7847 156..315 +
1681464055.5228937-UTR-Ecto-sp13_S_contig7847:1222..16081681464055.5228937-UTR-Ecto-sp13_S_contig7847:1222..1608Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7847 1223..1608 +
1681464055.563724-UTR-Ecto-sp13_S_contig7847:5824..59591681464055.563724-UTR-Ecto-sp13_S_contig7847:5824..5959Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7847 5825..5959 +
1681464055.587092-UTR-Ecto-sp13_S_contig7847:6720..69061681464055.587092-UTR-Ecto-sp13_S_contig7847:6720..6906Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7847 6721..6906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464055.5337062-CDS-Ecto-sp13_S_contig7847:1608..17281681464055.5337062-CDS-Ecto-sp13_S_contig7847:1608..1728Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7847 1609..1728 +
1681464055.543816-CDS-Ecto-sp13_S_contig7847:4443..47371681464055.543816-CDS-Ecto-sp13_S_contig7847:4443..4737Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7847 4444..4737 +
1681464055.5535676-CDS-Ecto-sp13_S_contig7847:5293..58241681464055.5535676-CDS-Ecto-sp13_S_contig7847:5293..5824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7847 5294..5824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7847.19111.1

>prot_Ecto-sp13_S_contig7847.19111.1 ID=prot_Ecto-sp13_S_contig7847.19111.1|Name=mRNA_Ecto-sp13_S_contig7847.19111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=315bp
MRKGETACRKLRVESAAPIVRLSRASPPTSEVLAGEEIEEVAQFLGGGLS
FDGDADSTECLLVLELANDSAFPVFPWRSHRAKQKQQGRHRRQLTAGTIG
GPEDGGGGGGGQVVEIRGGSRRCLSLRVPRLRVRPEGRSSGRDEDEPRSP
LSLRPLFDWEKSLASHILEELSLRWSTAREEALAAASLGTAAGGVVVPDP
LTGERTAAAARGGEEGWRSGRRGCVRIALDQVGEDGSCHRISSAGGGGGG
GGGGGGGGGGGSAVGGGGAGGSRPSQPRHPEAVPECLLGVLLPPVRLSCL
PCAFVPGVAGGGGG*
back to top

mRNA from alignment at Ecto-sp13_S_contig7847:156..6906+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7847.19111.1 ID=mRNA_Ecto-sp13_S_contig7847.19111.1|Name=mRNA_Ecto-sp13_S_contig7847.19111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6751bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7847:156..6906+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGAGGGCGCCCCCACCGCGGACGTACAAGAGCCTTCGAGCCACCTTCCG
CCAGCCCAAGCAGGCCTTGACTACGGACACCGTGGACATCGCCGCCGCTG
CAGCGGCAGCGGCGGCGCAGGCGGAGGCGGCGGCTGCCGCCGTTCAGGCC
GAAGAGGAAGGTGAGCACACAAGAAAGGGGAGAAGAAAGAGGGGGGCATT
GAGAGGGTGGGCGAGCGAACGGGGTTGGTGGTCCCAGCCCTCCTGCTGCT
GCTGCTGCTGCTGCTGCTGTTGCTGCTGGATGATGTGATTTGTGCGTTTG
CAGGTGTGCCTCGCTGGTGCCTCACTCCCTAGCCCGTCAAGCACGGCGAC
GGCGTCCCCGTTGTCGGAGATACAAGCAGAAAGAGGGGGACCTTGAGAGG
GTAGGCTGGGGAACGGAGTTGGTGGTGATGGACCGGGGGGGGAAGGGAAA
CGGGTTTTTGATCTGCGTGTGGTGGGCATGGAAGCGGGGAAGAACTAGAC
ACAGCGGTGCGGCGGTGGAAAGAGAGAGAGAGAGAGAGAGAGAGACGTCG
CCGAACAGAAAATGCAAGTCCTGGGAGATTTTTGAGAAGGGCAACGGGAG
AAACGGGAACGGAGGCAGTGGCGGGGTAGGCAAGCTGCGTGTGGGAGGAG
AAGACGTTTTCGCGACAGAGAGAGTTGTAACAGCATGTACATACAAAATC
ACTGGTGCGTTTTAGGAGAGCCAGCTGCGAGTGATGGTGATGGGGGGGAA
TGGGAGGCCTCGGTGACAAGCACGGTGGTCCGTTCCCTGATTGCCCTTAG
TGGCGTGTGTCACAGGTGTGGCGCAGGAGACAAACACGCGACAGAGCTTG
GCGTCATTGGTAGCTTTGTTCACGAACACGGTGTAAGAACCCGATTTGGG
GTGCTGTTTGCTGCGTGTGCGCACGCGAGACCCGCCGATGCTCACGCCGA
TGCTCATACCGCTGCTGCCGCCGATGCTCATGCCGATGCTCATACCGCTA
CTGCTGCTGCCGCTGCCGCTGCCGCCGCTCTTGCTGCTGCAACGTCGTGA
AATGAATCGCCGACCAGGGGCATCTCCGGTCGACTCAGAAGGAAACCCGA
CCGGAGGGACGGGGGGTGGATTTAGCGGGGGCGACGTGGAGGTGATCGGG
GGGGGTGCCGGGTTGTCTTCAAGCGTCGCCGGAGCAGCAGCAGCAGCAGC
AGGCGGGGTTGTCCCCCCGGACAAGGGCAGCAGCGGCAGCGCTAGCCCTC
ACGACGGCGAGGGTGATGACAACGGCGGTGGCGTGGCGGTGGAAGAGGGC
GAGGGAGCGGCGGCAGGGGAGGAGGGAGGCAGCCCCGACCGTGAAGACAA
GCAGGAAGAGGAGGATACGGCGAGGCGGCAACAGGACAGCAACGACGAGG
ACGAGGACGAGGAGGAGGAGGGAGAGGAAGACGATTTTACCCCAGACCCG
CGCATGAGGAAAGGGGAGACCGCCTGCCGGAAGCTGAGGGTGGAGAGCGC
CGCCCCCATCGTCAGGCTGTCTCGGGCGTCCCCGCCGACCTCAGAGGTCC
TTGCCGGGGAGGAGATTGAGGAGGTACGCGCGCCGGAACACACGGTCCAG
GGTTATCGTTCGACCTTGCGGCTGGACTTTCTTGTGGCCCGTTAGCTGTG
AGGATGGGGTCAATCCGACCAGGGTTTTCGTCCGACCGGGGCTAGATCTG
TTTGTAACTCGTTACCTGTGAGGATGAGGTCATGTGTATGTGTTGAGTGT
TTCGGATAGATGTATCTTGTGCTCCCAGGGAGGTTGGAGTAGAGATGTCG
GGGAGTGCCCTCTTGTTGGCATCGGAAGGATGTTTCCACGCACGACGTGT
TGAGTCGAAAGTGGGTGAGACGTGTTGGTAAGCGATGTTTTTTACCGGGC
TGGTCTTGAGTGTTGTTTGTTTGTTGCTCGGCAGCAGTGGGAGCCTCTTG
TCTCTTCTGATCTCCTTGTAACTCGTACTTCAGTACAATCCATCAGTATT
TTCTTTATGCCTGTTGCTCTCCGCGATGATGGTAACCCTACACCCCTCTC
GCCTCCTATGTACCTACCAGCGAGCAATCGTCCTCGAGTTATCTGAGACG
CTTGTCCATGCTTTTGTTCCTCGCTCATTTTTTGGTTCTTCTGTTCTTGC
TTTTCTTGCTTTTCTTGCTTGCCTTTCTTTCTTTCATTCTTTTTTCTCTC
CCTCTTGTCTCAAGCAGGCATCTCTCCACCTGCCCCGCCGCCGCCCCCTA
CCCCTCGGACCGATTTCAATGTTGCTTGTGTAAATCTTTTATCGTTTTGT
GTCTCCTCGATATTTTGTTTGTTCGTGCCCCCCCCCCCCCCCCCCCCCCC
CCCAAAGGTCCTGGGGGTGGGGTAACAGGGCGGGCCCTCTGTAAGGGTCG
CGGAGGGTTGGACGTTGGTGAATCAGGGCGGTCCATCGGTAGGCGTCATG
GAGGTCTGGACCAGGCCATGCCGCTCGACCAAGAAGCCGCTCGCCTCGGC
AATGTCTCTCCTCTTCTCCCTAGCGGACTCCGCCACTGCCGCCGCCGCCG
CCGCCCCGCAAGAAGCGGCATCGGGCGCCATCGGTGGCGAGGGAGGCAGT
GGGAGCGCGATGTCGTCTCCCGGGCTCGATGTCGGACTCGCTGCCCCAGT
GGGAGTGTCCGGGGGGGCGGCGGAGGGCGAGGGAGGAGGAGGCGTTGTGG
TTCCCGGGGGGGCGGTAATTCTGGCGCTGAAGCTGCGCGCCGGGCAGGCG
GCGGACCGGGACGTGGTGACCGAGGTAAGAAGGGGAGGAGGAGGAGGTCT
TCTTCGGCTGTGTCTGGCGTTACTATCGCTGCTGTAGTTTTGGGGGGGGA
AACTCGTCTTGGGAGTTTGATGGAGGGGGGGGGGGGACGACAGGTGGTTT
GTTGTGGCTTGACTCTTGCTTCAGGGTGTGACGTGGGGTTTTGGGGGGAA
ATGTGATTTGGTCTGGTGCAATCGTGATGTGATCTAACTGTATGCTGGGG
TAGTTGAACGTGTGCCAATCCTTTTCCACACGGCTGGTTGTGCCTTGCTG
GAGACTTCACCGAAAGTGGAAAATATCCTCAAGGGGGGGGGCGTCCGTTG
TCGGGCGTTGGTCCCTCAAACGTTGAACGGTTGGTCTCCTCGCGCTGGAC
TTCTACTCGATTTTTTGCCGGTGTTTTCTTCAAAGCTTCTGTTTTTCGTT
CCCGTCTCTCTCTTGCCACCCCGTCATAGGTGAACCGACAAACCTTCGTC
CTTTACACATACCCTTTCCCTGTCTGCCCCTTTCGAGATGAACCGACTTT
TGTCGAGATTCACCGCCCCTATCTCGCTTTCCCTTATCGCGTATTTTGTG
TTGACCCCCTCCTCCCTCCCCCACGACGTCTGATTGGTCCCGAAATGAAG
GTGCTGGTGAAGTACTCTGAGAAGGAAGGGGCGCCGTTCCACCGTCAGCT
GAGACTTCCGCTGCGCCTTGCAATACGAGGGGGGCTCCGTGTCTGCAGCC
TTAGGGTGAGAATGCGAAGGCCCCCCCCCGATAACTGCACATGCAAGCAA
TAATTCCTCGTTGTTGCTGGAGTGCGCCGTCCGTCTGTTACGCTTGCGTT
TTTTTGCACTTGAACGCGAATGAACGCCGTACCCAATTGCTTGCCGTGTA
CCCTGTGCCACCACTACGAGGTGCAAGCGTTGTGAACGCGCTGTGTATTT
TCTGGATGCACACGTCTCGTCTGGGGTGCCACCATGTCACCCACTCTTGG
AACACGACACTGAAAAGGAGGGGCGATAGGGACTGGCAGTGACATTGAAT
CAACCATGACCGCGCGCGGTCGTAGCCAGTCCGCACCTACCACGAGCAGC
AGTGCCTTTCCAACGCTCCTGATGACAACCAACTCAGCGACACAGACATT
GCATGAATCATGACCACGAGCAGCCAGCCCGTAGTACAGGCGGCTTCCCC
CTGACAAGAACCAACGCGACAACAACAACAACAGAACAACAATCACGGCA
GCGATAGCGGCAGCGAGCGTCGAGGGATGAATCGTCACCACGAGCATCCA
GCCCGTGACACAAGTAGCAAGCCACTATTCCAACACTCCTGATACCACCC
AACGCAACACAGCAACAACCACCACCACGAGCATCCAGCCCGTAACACAT
GCAGCAGTGGCTGTTCCAACACTCCCGAACAGCCAACGCGACCAAAACAA
CAACATCGACCCCAGCCCATTCCACAAGCAGCAGTGACCTCCCAACACTC
CTCATAACAACAACCACAACCACAACCTCGACCATTAGGTAGCGCAATTC
CTCGGCGGCGGCCTGAGCTTCGACGGCGACGCGGACTCGACCGAGTGCCT
GCTGGTCCTCGAGCTCGCCAACGACAGCGCCTTCCCGGTCTTCCCGTGGC
GCTCCCACCGCGCCAAACAAAAACAACAAGGACGTCATCGGCGGCAGCTC
ACGGCCGGGACAATTGGGGGCCCGGAGGATGGGGGGGGGGGGGGGGGGGG
GCAGGTAGTGGAGATACGGGGGGGGTCGCGGAGGTGCTTGTCTCTGAGGG
TGCCCCGGCTGAGAGTGAGGCCGGAGGGAAGGGTGAGTTTTTTTTGCGAT
CGTGCCCTCGCGACGCGAGGAAAATACTTCCGTAAATTGCTGTTGTTGTT
TGCTTTCGAGCGATTGGAATGTGGAAAAGTTGGCCTTTGTCCGTTGGGGG
GGGGGGGGGGGGGGGAGAGAAAGAGAGAGTGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGGGAGAGGGAGGTGTTTGTCATGCGGGA
GTGTTTGGTTTCCTTGATCTGATCTGATTTGATTATGCCATGCGATCTTG
ATCAGTTTCACAAGGTTTTCTGGTTTGTGTATTCGAGTCTCGGAATGGGG
TCGGATCCGTCATCTGGATACCAGCATTGTAGGAACGCGACGTCTGTGTG
GTCTACTGACGATGCGGCGTACGTTTACACGAGTCCCTCCCCCCCACGGT
CACTACGTGGTCAATGGTCTAGCCGCTACAGGCGTTCAAAACATGAGTAC
GCCCCCCCCCCTACGCCGCCAATTAGACCGATCTAACACCACGCTGCCTC
TCCCCCTGTTGTTCCGCTCCGCCGCTGCCGTCGCAAAGAGCTCGGGACGG
GATGAGGACGAGCCCCGTTCCCCCCTTTCGCTCCGGCCGCTGTTCGACTG
GGAGAAGTCCCTCGCCAGTCACATCCTCGAGGAGCTGTCGCTGCGGTGGT
CCACGGCTCGAGAGGAGGCCCTCGCGGCCGCCTCGTTAGGGACCGCCGCT
GGAGGCGTCGTTGTCCCTGACCCGCTGACAGGAGAAAGGACGGCGGCGGC
GGCGAGGGGCGGAGAGGAAGGTTGGCGGTCGGGCCGGCGGGGGTGTGTCA
GGATCGCCTTGGATCAGGTAGGCGAAGACGGGAGTTGTCATCGCATCAGC
TCTGCGGGGGGCGGCGGCGGCGGCGGCGGCGGAGGCGGAGGCGGAGGCGG
AGGCGGCTCCGCCGTCGGAGGAGGAGGGGCGGGGGGATCGAGGCCATCGC
AGCCACGGCACCCCGAGGCGGTGCCCGAGTGCCTTCTCGGAGTCTTGCTG
CCGCCTGTCAGGCTGAGCTGTCTGCCGTGCGCCTTCGTCCCTGGTGTCGC
CGGTGGTGGGGGTGGGTGAGGTGTTGGGTGGTCGGCGGCGGGTGCGAAAG
GGATCTTCGGCGCGGGAGAGGGGGTTCCCAGGGTCGGGATCGACGAGGCC
GGGCGCGTTCAGGTGGAGGGGGGGAGGATCCGTGAGGTGGAGGGAGCGTG
GGCGGTGAGTGCGTTGGGTGCACGTCGTGGCGTGGTGCGGGGTGTTGGGG
TGGTGGGAGATCGGGAAGACGAAACAACCGAAAGGAACTAAGAAGACCCC
CAAAGAGCAAACCGCACTACCGTAAAAGTAGTGCGGGCGAAGGCACACAG
GATTTGAGATCGACATGAAAAAATGAAGTCGACCGCTCCACAGCCAAAAG
GCTGTCAAAGCCGACCAGGGTAATTTTGGAACGACGTTATCGAGAGCAAG
GTAAGAGATCGAAACCTTTCCCGGAAAATAAAGGCAGCAAGCGCTATTTG
AGAACAAATATGGCGAGGGTAAACGTCTTGTGATGTGTAGGAGACCCTAG
AGTATCGGTACGTCGTGTGTTTCTTGAGCTGGTACCGGCTGCGCTTAACC
TACTGACCAGTTACAATTCGTCAGCATTAACCATGTAGCGGGCTACAACC
AAGGCCCCTCGGGAGAGGACCGAAGGTGTAAGAAACGCGCGACGCCCGAC
ACGCCAAAGTACACCTGTACAAACCCCACTTTTTTCGCGTGAGACACACG
CCACGAACAATAACTGCTGTTTTAAATGTGTGTGCTTCCTGTCCAAACCC
TTTTCTTCGACTCTCGCTATAAACAGTAGGGTTGCCGGTTGTGTGTGCTT
CTTTTCCAAACCTTTATGTTCTCGAGACACATGTGCGCTATCGATATTAT
TTTTCCCACAACACTAGCGTCTGTTGATTGTCACGGTATGTGTGTTATCC
TTATTATTTGTTCAGGCGCAGACGACGGTGGACTCCTTCCTGCCGGTGTC
CCTAGTGGTACACAACTCGTCCCGCTGGCCCATTGACGTCATCGTGGAGG
TTACCTCCACCTCCGAGGGTAGGGAGGGAGGGGGCTCCGTGTACTGGGGC
AACGAAGACGAGGACGACTCCGGACGCGTCATGTGGTCGGGGATGCCGAG
G
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7847:156..6906+

>mRNA_Ecto-sp13_S_contig7847.19111.1 ID=mRNA_Ecto-sp13_S_contig7847.19111.1|Name=mRNA_Ecto-sp13_S_contig7847.19111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=945bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7847:156..6906+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGAAAGGGGAGACCGCCTGCCGGAAGCTGAGGGTGGAGAGCGCCGC
CCCCATCGTCAGGCTGTCTCGGGCGTCCCCGCCGACCTCAGAGGTCCTTG
CCGGGGAGGAGATTGAGGAGGTAGCGCAATTCCTCGGCGGCGGCCTGAGC
TTCGACGGCGACGCGGACTCGACCGAGTGCCTGCTGGTCCTCGAGCTCGC
CAACGACAGCGCCTTCCCGGTCTTCCCGTGGCGCTCCCACCGCGCCAAAC
AAAAACAACAAGGACGTCATCGGCGGCAGCTCACGGCCGGGACAATTGGG
GGCCCGGAGGATGGGGGGGGGGGGGGGGGGGGGCAGGTAGTGGAGATACG
GGGGGGGTCGCGGAGGTGCTTGTCTCTGAGGGTGCCCCGGCTGAGAGTGA
GGCCGGAGGGAAGGAGCTCGGGACGGGATGAGGACGAGCCCCGTTCCCCC
CTTTCGCTCCGGCCGCTGTTCGACTGGGAGAAGTCCCTCGCCAGTCACAT
CCTCGAGGAGCTGTCGCTGCGGTGGTCCACGGCTCGAGAGGAGGCCCTCG
CGGCCGCCTCGTTAGGGACCGCCGCTGGAGGCGTCGTTGTCCCTGACCCG
CTGACAGGAGAAAGGACGGCGGCGGCGGCGAGGGGCGGAGAGGAAGGTTG
GCGGTCGGGCCGGCGGGGGTGTGTCAGGATCGCCTTGGATCAGGTAGGCG
AAGACGGGAGTTGTCATCGCATCAGCTCTGCGGGGGGCGGCGGCGGCGGC
GGCGGCGGAGGCGGAGGCGGAGGCGGAGGCGGCTCCGCCGTCGGAGGAGG
AGGGGCGGGGGGATCGAGGCCATCGCAGCCACGGCACCCCGAGGCGGTGC
CCGAGTGCCTTCTCGGAGTCTTGCTGCCGCCTGTCAGGCTGAGCTGTCTG
CCGTGCGCCTTCGTCCCTGGTGTCGCCGGTGGTGGGGGTGGGTGA
back to top