mRNA_Ecto-sp13_S_contig7845.19109.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7845.19109.1
Unique NamemRNA_Ecto-sp13_S_contig7845.19109.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7845.19109.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 379 bits (973), Expect = 1.520e-120
Identity = 191/207 (92.27%), Postives = 195/207 (94.20%), Query Frame = 1
Query:    1 IAHARGETFKDCCLDAVTSAANPFIPGLVLSIRLAEAAEKANEGERRAITDIQESVNALLLEVLERLPRSVRSFERDMDDCRDMFEPTFLDVFEDFEKPLEMMLSRQQQRELFCSVPLVMDFLKRKFTLSLPRLRDPKEVLADSNEILHLSRGGVKGDVCLVLDWGVGVNVRKEDGHLNDEQIDEMLGEAIGQADDHASSKPPWKHP 621
            IAHARGE FKDCCLDAVTSAANPFIPGLVLSIRLAEAAEKANEGERRAITDIQESVNALLLEVLERLPRSVRSFERDMDDCRDMFEP FLDVFEDFEKPLEMMLSRQQQRELFC+VPLVMDFLKRKFTLSLPRLRDPKEVLADSNEILHLSRGGVKGDVCLVLDWGV V+V+KEDGHLNDEQID        QADDHAS +PPWKHP
Sbjct:  471 IAHARGEAFKDCCLDAVTSAANPFIPGLVLSIRLAEAAEKANEGERRAITDIQESVNALLLEVLERLPRSVRSFERDMDDCRDMFEPKFLDVFEDFEKPLEMMLSRQQQRELFCNVPLVMDFLKRKFTLSLPRLRDPKEVLADSNEILHLSRGGVKGDVCLVLDWGVDVDVQKEDGHLNDEQIDXXXXXXXXQADDHASLRPPWKHP 677          
BLAST of mRNA_Ecto-sp13_S_contig7845.19109.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 2.310e-72
Identity = 136/212 (64.15%), Postives = 159/212 (75.00%), Query Frame = 1
Query:    1 IAHARGETFKDCCLDAVTSAANPFIPGLVLSIRLAEAAEKANEGERRAITDIQESVNALLLEVLERLPRSVRSFERDMDDCRDMFEPTFLDVFEDFEKPLEMMLSRQQQRELFCSVPLVMDFLKRKFTLSLPRLRDPKEVLADSNEILHLSRGGVKGDVCLVLDWGVGV-----NVRKEDGHLNDEQIDEMLGEAIGQADDHASSKPPWKHP 621
            IAHA GE F+DCCLDAV SA+NPFIPGLVLSIRLAEAAEK NEGE+RAITD+   VN LLLE+LE LPRSVRSFERDMD   DMFEP  L   +DFE P+EM+LSR+QQ E+FCS PLVMDF+KRKFTL LP +RD KE+LADS EI HLS G V+G+VCLVL   V +     +VR+EDG   D + ++M  +A  +AD    S   W HP
Sbjct:  289 IAHAGGEKFRDCCLDAVASASNPFIPGLVLSIRLAEAAEKTNEGEQRAITDVHARVNDLLLEILEGLPRSVRSFERDMDASGDMFEPASLPS-KDFETPMEMILSRRQQTEIFCSAPLVMDFIKRKFTLGLPSMRDKKEILADSKEIFHLSGGDVRGNVCLVLGTFVPITVVDADVRREDGPFIDLKAEDMDKKAA-RADHGQLSAQAWAHP 498          
BLAST of mRNA_Ecto-sp13_S_contig7845.19109.1 vs. uniprot
Match: A0A6H5JZL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL1_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 5.030e-70
Identity = 113/125 (90.40%), Postives = 119/125 (95.20%), Query Frame = 1
Query:   94 IRLAEAAEKANEGERRAITDIQESVNALLLEVLERLPRSVRSFERDMDDCRDMFEPTFLDVFEDFEKPLEMMLSRQQQRELFCSVPLVMDFLKRKFTLSLPRLRDPKEVLADSNEILHLSRGGVK 468
            IRLAEAAEKA+EGERRAITDIQESVNALLLEVLERLPRSVRSFERDMDDCRD+ EP FL +FEDFE PLEMM+SRQQQRELFC+VPLVMDFLK KF LSLPRLRDPKEVLADSNEILHLSRGGV+
Sbjct:   44 IRLAEAAEKASEGERRAITDIQESVNALLLEVLERLPRSVRSFERDMDDCRDIIEPKFLGIFEDFEMPLEMMISRQQQRELFCNVPLVMDFLKWKFALSLPRLRDPKEVLADSNEILHLSRGGVE 168          
BLAST of mRNA_Ecto-sp13_S_contig7845.19109.1 vs. uniprot
Match: D7G6K7_ECTSI (Transient Receptor Potential Channel. C terminally truncated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K7_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 1.990e-42
Identity = 87/159 (54.72%), Postives = 114/159 (71.70%), Query Frame = 1
Query:    7 HARGETFKDCCLDAVTSAANPFIPGLVLSIRLAEAAEKANEGERRAITDIQESVNALLLEVLERLPRSVRSFERDMDD-CRDMFEPTFLDVFED--FEKPLEMMLSRQQQRELFCSVPLVMDFLKRKFTLSLPRLRDPKEVLADSNEILHLSRGGVKGD 474
            H   + FK+CCL AVT+AANPF+PGL+LSIRLAEAA++ANEGE+R I +I+ SV ALLLE+ ERLPR+VR+F+ +    C  MFEP  L       FE+P+ M+LS+Q+Q   FC+VPLVMDFL R+F   LP L+D + VL +S ++  L  G V GD
Sbjct:  183 HKSRDGFKNCCLRAVTTAANPFMPGLLLSIRLAEAAKEANEGEQRHIDEIRASVEALLLEIFERLPRTVRAFDEETKGGCTGMFEPQILGGHHPLGFERPVNMILSKQEQMNTFCNVPLVMDFLSRRFAWGLPDLQDTEGVLRNSEDLKCLGAGLVLGD 341          
BLAST of mRNA_Ecto-sp13_S_contig7845.19109.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.580e-37
Identity = 80/160 (50.00%), Postives = 107/160 (66.88%), Query Frame = 1
Query:   10 ARGETFKDCCLDAVTSAANPFIPGLVLSIRLAEAAEKANEGERRAITDIQESVNALLLEVLERLPRSVRSFERD--MDDCRDMFEPTFLDVF---EDFEKPLEMMLSRQQQRELFCSVPLVMDFLKRKFTLSLPRLRDPKEVLADSNEILHLSRGGVKGD 474
            A G+ FK CCL AVTSAANPF+PG+ LSIRL+EAA++A+EGERRA+ D + S++ LLLE+ ERLP++VR FE    MD C ++ EP  +       D   PL+M++S   Q E FC VPL+MDFL  KFTL LP L D   +L + + + +L   G+  D
Sbjct:  534 ASGDIFKRCCLRAVTSAANPFVPGVTLSIRLSEAAKQASEGERRALFDTKSSIDELLLEMFERLPQTVRGFEEQAGMDSCTNVLEPELMRATTGSNDLGGPLDMIISDPLQLETFCKVPLIMDFLSSKFTLGLPDLMDTAGLLKNEHHLWYLEEDGLFRD 693          
BLAST of mRNA_Ecto-sp13_S_contig7845.19109.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.500e-36
Identity = 78/160 (48.75%), Postives = 106/160 (66.25%), Query Frame = 1
Query:   10 ARGETFKDCCLDAVTSAANPFIPGLVLSIRLAEAAEKANEGERRAITDIQESVNALLLEVLERLPRSVRSFERDM--DDCRDMFEPTFLDV---FEDFEKPLEMMLSRQQQRELFCSVPLVMDFLKRKFTLSLPRLRDPKEVLADSNEILHLSRGGVKGD 474
            A G+ FK CCL AVTSAANPFIPG+ LSIRL EAA++A+EGERRA+ + + S++ +LLE+ ERLP++VR FE     D C ++ EP  +       D   PL+M++S   Q E FC VPL+MDFL  KFTL LP L D   +L + +++ +L   G+  D
Sbjct:  517 ASGDVFKRCCLRAVTSAANPFIPGVTLSIRLTEAAKQASEGERRALFETKSSIDEMLLEMFERLPQTVRGFEEQAGTDSCTNVLEPELMRAQSGSNDLGGPLDMIISDPLQLETFCKVPLIMDFLSSKFTLGLPDLMDTAGLLKNEHQLWYLEEDGLFRD 676          
BLAST of mRNA_Ecto-sp13_S_contig7845.19109.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.230e-31
Identity = 79/192 (41.15%), Postives = 110/192 (57.29%), Query Frame = 1
Query:   19 ETFKDCCLDAVTSAANPFIPGLVLSIRLAEAAEKANEGERRAITDIQESVNALLLEVLERLPRSVRSFERDMDDCRDMFEPTFL-DVFEDFEKPLEMMLSRQQQRELFCSVPLVMDFLKRKFTLSLPRLRDPKEVLADSNEILHLSRGG----VKGDVCLVLDWGVGVNVRKEDGHLNDEQIDEMLGEAIGQ 579
            E  + C L+ V  + NPF+PG+ LSI  A++A  A EGERR +  +QE V+ LLLE+LERLP++V+ F+  M  C  +FEP    +       PL + L  +Q  + FC+ PL+ DFL R+FT  LP LRD + +L D  E+ +L+RGG    + G   L LD       RKEDG   D  +   L + IGQ
Sbjct:  559 EWLRTCFLETVACSDNPFVPGMTLSIAFAKSASVAPEGERRKLLSLQERVDTLLLEILERLPQTVQGFDGGMTGCSAVFEPELSREDARGLPGPLRLALQERQHVQTFCTQPLLTDFLSRRFTYGLPGLRDTQNILGDRRELTNLARGGPGELMSGQKYLALDEE---GRRKEDGRSLDRCLLLDLQDKIGQ 747          
BLAST of mRNA_Ecto-sp13_S_contig7845.19109.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 5.120e-30
Identity = 64/146 (43.84%), Postives = 97/146 (66.44%), Query Frame = 1
Query:   28 KDCCLDAVTSAANPFIPGLVLSIRLAEAAEKANEGERRAITDIQESVNALLLEVLERLPRSVRSFERDMDDCRDMFEP-TFLDVFEDFEKPLEMMLSRQQQRELFCSVPLVMDFLKRKFTLSLPRLRDPKEVLADSNEILHLSRGG 462
            K+  L A++SA NPFIPG+ LS+    A  +A EGE+R +  +Q +V+ LLLEVLE +P++V+ F+ +M DC  +FEP T +  F  ++ PL ++LS+++Q E +C++PLV+DF+ RKFT  LP LRD + VL  +        GG
Sbjct:  927 KESLLGAISSANNPFIPGMNLSVACTTATRRAMEGEKRRLASMQAAVDELLLEVLEHMPQTVKGFKGEMRDCSAIFEPETVISRFHGYQGPLHVVLSKREQMETYCTIPLVLDFMTRKFTKGLPSLRDTEGVLLSNKGFTQTLYGG 1072          
BLAST of mRNA_Ecto-sp13_S_contig7845.19109.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 9.270e-30
Identity = 62/136 (45.59%), Postives = 96/136 (70.59%), Query Frame = 1
Query:   28 KDCCLDAVTSAANPFIPGLVLSIRLAEAAEKANEGERRAITDIQESVNALLLEVLERLPRSVRSFERDMDDCRDMFEP-TFLDVFEDFEKPLEMMLSRQQQRELFCSVPLVMDFLKRKFTLSLPRLRDPKEVLADS 432
            K+  L A++SA NPFIPG+ LS+    A  +A EGE+R +  +Q +++ LLLEVLE +P++V+ F+ +M DC  +FEP T +  F  ++ PL ++LS++QQ E +C++PLV+DF+ RKFT  LP LRD + VL ++
Sbjct:  679 KESLLGAISSADNPFIPGMNLSVACTMATRRAMEGEKRRLASMQAAIDELLLEVLEHMPQTVKGFKGEMRDCSAIFEPETVISRFHGYQGPLHVVLSKRQQMETYCTIPLVLDFMSRKFTKGLPSLRDTEGVLLNN 814          
BLAST of mRNA_Ecto-sp13_S_contig7845.19109.1 vs. uniprot
Match: A0A6H5JCX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.370e-24
Identity = 74/187 (39.57%), Postives = 100/187 (53.48%), Query Frame = 1
Query:    7 HARGETFKDCCLDAVTSAANPFIPGLVLSIRLAEAAEKANEGERRAITDIQESVNALLLEVLERLPRSVRSFERDMDDCRDMFEPTFLDVFED---FEKPLEMML-SRQQQRELFCSVPLVMDFLKRKFTLSLPRLRDPKEVLADSNEILHLSRGGVKGDVCLVLDWGVGVNVRKEDGHLNDEQIDE 555
            H   E   DCCL  V ++ N FI G+ LS+   +  +KA EGER  +  IQ  V+ALLLE+LERLP++V  F   M DC  +  P F     +   F+ PL ++L +   Q E FCS PL+MD+L RKFT  LP + D   VL +  E   LS  G  G + LV+  G            +DE++DE
Sbjct:   42 HPSDERLHDCCLRVVAASDNLFISGMTLSVARVDVTKKAPEGERGTLEAIQGHVHALLLEILERLPQTVNGFNGGMADCSAVLGPEFDSKTGESTGFKPPLALLLLANSIQTETFCSTPLIMDYLSRKFTHGLPDVGDKDGVLRNGTEHDVLSGSG-PGMMSLVIGGG------------DDEELDE 215          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7845.19109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KJG3_9PHAE1.520e-12092.27Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JG42_9PHAE2.310e-7264.15Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JZL1_9PHAE5.030e-7090.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6K7_ECTSI1.990e-4254.72Transient Receptor Potential Channel. C terminally... [more]
A0A6H5KBU4_9PHAE1.580e-3750.00Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FZR6_ECTSI2.500e-3648.75Ankyrin Repeat Transient Receptor Potential Channe... [more]
D7FLB1_ECTSI1.230e-3141.15Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5LDE6_9PHAE5.120e-3043.84Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LT30_ECTSI9.270e-3045.59Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JCX0_9PHAE2.370e-2439.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7845contigEcto-sp13_S_contig7845:615..1237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score390.2
Seed ortholog evalue6e-106
Seed eggNOG ortholog2880.D8LPZ1
Model size623
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
Ec32 ortholog descriptionTransient Receptor Potential Channel
Ec32 orthologEc-15_001590.1
Cds size621
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464055.4432151-CDS-Ecto-sp13_S_contig7845:614..12351681464055.4432151-CDS-Ecto-sp13_S_contig7845:614..1235Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7845 615..1235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7845.19109.1prot_Ecto-sp13_S_contig7845.19109.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7845 615..1235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7845.19109.1

>prot_Ecto-sp13_S_contig7845.19109.1 ID=prot_Ecto-sp13_S_contig7845.19109.1|Name=mRNA_Ecto-sp13_S_contig7845.19109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=207bp
IAHARGETFKDCCLDAVTSAANPFIPGLVLSIRLAEAAEKANEGERRAIT
DIQESVNALLLEVLERLPRSVRSFERDMDDCRDMFEPTFLDVFEDFEKPL
EMMLSRQQQRELFCSVPLVMDFLKRKFTLSLPRLRDPKEVLADSNEILHL
SRGGVKGDVCLVLDWGVGVNVRKEDGHLNDEQIDEMLGEAIGQADDHASS
KPPWKHP
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mRNA from alignment at Ecto-sp13_S_contig7845:615..1237+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7845.19109.1 ID=mRNA_Ecto-sp13_S_contig7845.19109.1|Name=mRNA_Ecto-sp13_S_contig7845.19109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=623bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7845:615..1237+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTGCGCACGCCCGAGGAGAGACCTTCAAGGACTGCTGCTTGGACGCCGT TACCTCTGCTGCGAACCCGTTCATCCCGGGCTTGGTGCTGTCGATACGCC TCGCCGAGGCTGCCGAAAAGGCTAACGAGGGGGAACGAAGAGCCATCACA GACATCCAGGAGAGCGTGAACGCTCTCTTGCTCGAGGTACTTGAGCGGCT TCCTCGATCGGTCAGATCCTTCGAGAGGGACATGGACGACTGCCGTGACA TGTTTGAGCCGACTTTCTTGGACGTTTTCGAGGACTTCGAAAAGCCTCTG GAGATGATGCTTTCAAGACAGCAGCAGAGGGAACTTTTCTGCAGCGTTCC TCTCGTCATGGACTTCTTGAAACGGAAGTTCACTCTCAGCCTGCCTCGCC TGCGCGACCCGAAGGAGGTTCTTGCGGATTCCAACGAGATCTTGCATCTG AGTCGTGGGGGAGTGAAAGGAGATGTCTGCCTTGTGCTTGATTGGGGTGT AGGCGTCAATGTTCGGAAAGAAGATGGCCATTTGAACGACGAACAGATCG ACGAAATGCTTGGAGAAGCGATTGGACAGGCGGACGACCACGCTTCATCA AAACCACCATGGAAGCATCCCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7845:615..1237+

>mRNA_Ecto-sp13_S_contig7845.19109.1 ID=mRNA_Ecto-sp13_S_contig7845.19109.1|Name=mRNA_Ecto-sp13_S_contig7845.19109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7845:615..1237+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTGCGCACGCCCGAGGAGAGACCTTCAAGGACTGCTGCTTGGACGCCGT
TACCTCTGCTGCGAACCCGTTCATCCCGGGCTTGGTGCTGTCGATACGCC
TCGCCGAGGCTGCCGAAAAGGCTAACGAGGGGGAACGAAGAGCCATCACA
GACATCCAGGAGAGCGTGAACGCTCTCTTGCTCGAGGTACTTGAGCGGCT
TCCTCGATCGGTCAGATCCTTCGAGAGGGACATGGACGACTGCCGTGACA
TGTTTGAGCCGACTTTCTTGGACGTTTTCGAGGACTTCGAAAAGCCTCTG
GAGATGATGCTTTCAAGACAGCAGCAGAGGGAACTTTTCTGCAGCGTTCC
TCTCGTCATGGACTTCTTGAAACGGAAGTTCACTCTCAGCCTGCCTCGCC
TGCGCGACCCGAAGGAGGTTCTTGCGGATTCCAACGAGATCTTGCATCTG
AGTCGTGGGGGAGTGAAAGGAGATGTCTGCCTTGTGCTTGATTGGGGTGT
AGGCGTCAATGTTCGGAAAGAAGATGGCCATTTGAACGACGAACAGATCG
ACGAAATGCTTGGAGAAGCGATTGGACAGGCGGACGACCACGCTTCATCA
AAACCACCATGGAAGCATCCC
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