prot_Ecto-sp13_S_contig7844.19107.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7844.19107.1
Unique Nameprot_Ecto-sp13_S_contig7844.19107.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length176
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7844.19107.1 vs. uniprot
Match: A0A6H5KT30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT30_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.980e-11
Identity = 42/73 (57.53%), Postives = 46/73 (63.01%), Query Frame = 0 
Query:  103 GQYFRXXXXXXXXXXXXXXXXXXXXXXXMGAVPGTIVEGRGRAVETAEAAVGVDEPAVLLQKEASPDFEGTSG 175
            GQY+R                       MGAVPGTIVEGRGRA+ETAEAA+GVDEPAV  QKEASP+ E TSG
Sbjct:    5 GQYYRGGSSTRQGFLKAGGLAAAGVIAAMGAVPGTIVEGRGRALETAEAAIGVDEPAVF-QKEASPNLELTSG 76
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BLAST of mRNA_Ecto-sp13_S_contig7844.19107.1 vs. uniprot
Match: D7G1J0_ECTSI (Choline/ethanolamine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J0_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.000e-9
Identity = 39/64 (60.94%), Postives = 39/64 (60.94%), Query Frame = 0 
Query:  102 GGQYFRXXXXXXXXXXXXXXXXXXXXXXXMGAVPGTIVEGRGRAVETAEAAVGVDEPAVLLQKE 165
            GGQY R                  X    MGAVPGTIVEGRGRAVE  EAAVGVDEPAVLLQKE
Sbjct:   13 GGQYCRDGSSTRQGFLKAGGLAAAXVIAAMGAVPGTIVEGRGRAVEMVEAAVGVDEPAVLLQKE 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7844.19107.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KT30_9PHAE1.980e-1157.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1J0_ECTSI5.000e-960.94Choline/ethanolamine kinase n=1 Tax=Ectocarpus sil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..175
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7844contigEcto-sp13_S_contig7844:3445..5103 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7844.19107.1mRNA_Ecto-sp13_S_contig7844.19107.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7844 3445..5103 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7844.19107.1 ID=prot_Ecto-sp13_S_contig7844.19107.1|Name=mRNA_Ecto-sp13_S_contig7844.19107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
QVLAAAAVLVHLPACHVRGYTAIPPPSLMRGGLSARAAGVGERYDSAGRA
WRDTHRRAAQGTDLARPGQHQSLSLSLSPSSEGDQVSSDGKASTTATTTT
TGGQYFRGGSFTRQGFLKAGGLAVAGVIAAMGAVPGTIVEGRGRAVETAE
AAVGVDEPAVLLQKEASPDFEGTSG*
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