mRNA_Ecto-sp13_S_contig7844.19107.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7844.19107.1
Unique NamemRNA_Ecto-sp13_S_contig7844.19107.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7844.19107.1 vs. uniprot
Match: A0A6H5KT30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT30_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.980e-11
Identity = 42/73 (57.53%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:  307 GQYFRXXXXXXXXXXXXXXXXXXXXXXXMGAVPGTIVEGRGRAVETAEAAVGVDEPAVLLQKEASPDFEGTSG 525
            GQY+R                       MGAVPGTIVEGRGRA+ETAEAA+GVDEPAV  QKEASP+ E TSG
Sbjct:    5 GQYYRGGSSTRQGFLKAGGLAAAGVIAAMGAVPGTIVEGRGRALETAEAAIGVDEPAVF-QKEASPNLELTSG 76
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BLAST of mRNA_Ecto-sp13_S_contig7844.19107.1 vs. uniprot
Match: D7G1J0_ECTSI (Choline/ethanolamine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J0_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.000e-9
Identity = 39/64 (60.94%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:  304 GGQYFRXXXXXXXXXXXXXXXXXXXXXXXMGAVPGTIVEGRGRAVETAEAAVGVDEPAVLLQKE 495
            GGQY R                  X    MGAVPGTIVEGRGRAVE  EAAVGVDEPAVLLQKE
Sbjct:   13 GGQYCRDGSSTRQGFLKAGGLAAAXVIAAMGAVPGTIVEGRGRAVEMVEAAVGVDEPAVLLQKE 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7844.19107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KT30_9PHAE1.980e-1157.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1J0_ECTSI5.000e-960.94Choline/ethanolamine kinase n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7844contigEcto-sp13_S_contig7844:3445..5103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score65.9
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog2880.D7G1J0
Model size528
KEGG rclassRC00002,RC00017
KEGG koko:K00894
KEGG ReactionR01468
KEGG Pathwayko00564,ko01100,map00564,map01100
KEGG ModuleM00092
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016020,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044464,GO:0071704,GO:0071944,GO:0090407,GO:1901576
Exons3
EggNOG free text desc.ethanolamine kinase activity
EggNOG OGsCOG0510@1,KOG4720@2759
Ec32 ortholog descriptioncholine/ethanolamine kinase
Ec32 orthologEc-07_001220.1
EC2.7.1.82
Cds size528
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464055.3231869-CDS-Ecto-sp13_S_contig7844:3444..36141681464055.3231869-CDS-Ecto-sp13_S_contig7844:3444..3614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7844 3445..3614 +
1681464055.338742-CDS-Ecto-sp13_S_contig7844:4185..43191681464055.338742-CDS-Ecto-sp13_S_contig7844:4185..4319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7844 4186..4319 +
1681464055.348656-CDS-Ecto-sp13_S_contig7844:4879..51031681464055.348656-CDS-Ecto-sp13_S_contig7844:4879..5103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7844 4880..5103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7844.19107.1prot_Ecto-sp13_S_contig7844.19107.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7844 3445..5103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7844.19107.1

>prot_Ecto-sp13_S_contig7844.19107.1 ID=prot_Ecto-sp13_S_contig7844.19107.1|Name=mRNA_Ecto-sp13_S_contig7844.19107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
QVLAAAAVLVHLPACHVRGYTAIPPPSLMRGGLSARAAGVGERYDSAGRA
WRDTHRRAAQGTDLARPGQHQSLSLSLSPSSEGDQVSSDGKASTTATTTT
TGGQYFRGGSFTRQGFLKAGGLAVAGVIAAMGAVPGTIVEGRGRAVETAE
AAVGVDEPAVLLQKEASPDFEGTSG*
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mRNA from alignment at Ecto-sp13_S_contig7844:3445..5103+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7844.19107.1 ID=mRNA_Ecto-sp13_S_contig7844.19107.1|Name=mRNA_Ecto-sp13_S_contig7844.19107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1659bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7844:3445..5103+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTCTCGCTGCGGCCGCGGTGCTCGTTCACCTACCGGCGTGCCATGT
CCGGGGATATACGGCGATTCCGCCCCCATCTTTAATGAGAGGGGGGCTTT
CCGCGCGTGCCGCGGGGGTAGGGGAGCGGTACGATAGCGCAGGGCGGGCG
TGGCGAGACACGCACAGAAGGTTAGCGCTTGGTTTGTGCGGGCTCCGCTA
GTTGTTTGTCGGGTGGTCGCCGTGTTCGGGGTTTTGAGAGTGTTGATGGC
GTTGTTGTAGCTACTGCTGATATTGTTGTTGTGGTTGTAGTCGCGGTATG
TTCTGCGGGAGGATTTGGATTTTCTTTGGTCAGGATGTAGTTCGCTGGGC
ATGCGGTTCGACAGCGGGTCTGTCCGGCGTGAGATCCATGGATTCTTTCA
TGCGGTGTTCGTCTTCTCTGTCCAACACGTTGGGCTCGGTGCTGGGCTCA
GAGCGTCCACGAACAGCAGTCGCTTGGTGCCCCTTCTCAAGCTTTATTTT
GTTTTGCTTCTTGTCTTGTTTCAAGCCCGCTGTTTCAATCTGGCATGTCG
TGTACACCGCATTAATTGAGTATTTCTGCGTACCCCCCATCTTTGGGTGA
GAGTTTAGCAAACCGGTTTGCTATTGAAAGGGTTATACGCGTGCGTGCAT
GCGTGCGCGGGGGTCAACAAAAACTGCTGCGACCGTTGTTTGCCTGGTCG
CCTCCCTTGTTCAAACCATGGTTATCCGCCGGCACGGAAAGGGCCGCTCA
GGGAACGGATCTCGCCCGGCCTGGGCAGCACCAGTCGCTGTCGCTGTCGC
TGTCGCCGTCGAGCGAGGGCGACCAGGTCTCATCGGACGGGAAGGCGTCA
ACAACAGCAACAACAACAACAACGGGTGATGCATGCTTCGGGTGCTGCTT
GTAGTCGGCTTTGGTGTCTGCAAGGCGTGTGCGATTGAGGGTTCATCCCA
CCGCGTTCGTGAGGGGTCAATTTTGTATCCTTCGGCGCCATTACGACATG
GCCGCGTGAAATAAAAACTGTTCCGTCTTTGCCACCTCCAGTCGCCGGGA
AAATCCTGTTCTCCCGAAGAACGGATCGTTTTCTTTCATCGTGGGCCGTC
TGCCGCCCCCCCGGGCAGGCGCGTCATGGGACAAGCGCCCCCGACACTCA
AACCATTGCTACTGCTTCCGAGGTCGGACATGTCGGTTGCACCACCGAGG
ATGTTCTTCGCCTCGTTGATGTCGCACCACAGCTTAACGCGGCAGTAACC
TCGTCGTCGAGCCGCAAACGACACGAGAGGCGTGTTCTGGTGGGGAAGTA
GGCGCCGGGGTTGGAGCGTGTACTGTACCCTTGGTACCTCAGCGGGATAT
TCAAAACCTCACAGGCCTCCCTCCGGTTGTGCTTTTGTTTTCAGCCTTTC
GAACGCTCGGTTTTGCTTGTGGTACTGTTTTCCAGGTGGTCAGTATTTCC
GAGGCGGCAGCTTCACACGCCAGGGGTTCCTTAAGGCCGGCGGCCTCGCT
GTTGCCGGGGTGATCGCCGCCATGGGAGCTGTACCTGGGACAATCGTGGA
GGGCCGGGGGAGGGCTGTTGAAACAGCGGAGGCAGCAGTAGGAGTGGACG
AACCAGCGGTTTTGCTTCAGAAGGAGGCAAGTCCGGACTTCGAGGGTACC
TCGGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7844:3445..5103+

>mRNA_Ecto-sp13_S_contig7844.19107.1 ID=mRNA_Ecto-sp13_S_contig7844.19107.1|Name=mRNA_Ecto-sp13_S_contig7844.19107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7844:3445..5103+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTCTCGCTGCGGCCGCGGTGCTCGTTCACCTACCGGCGTGCCATGT
CCGGGGATATACGGCGATTCCGCCCCCATCTTTAATGAGAGGGGGGCTTT
CCGCGCGTGCCGCGGGGGTAGGGGAGCGGTACGATAGCGCAGGGCGGGCG
TGGCGAGACACGCACAGAAGGGCCGCTCAGGGAACGGATCTCGCCCGGCC
TGGGCAGCACCAGTCGCTGTCGCTGTCGCTGTCGCCGTCGAGCGAGGGCG
ACCAGGTCTCATCGGACGGGAAGGCGTCAACAACAGCAACAACAACAACA
ACGGGTGGTCAGTATTTCCGAGGCGGCAGCTTCACACGCCAGGGGTTCCT
TAAGGCCGGCGGCCTCGCTGTTGCCGGGGTGATCGCCGCCATGGGAGCTG
TACCTGGGACAATCGTGGAGGGCCGGGGGAGGGCTGTTGAAACAGCGGAG
GCAGCAGTAGGAGTGGACGAACCAGCGGTTTTGCTTCAGAAGGAGGCAAG
TCCGGACTTCGAGGGTACCTCGGGGTAG
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