mRNA_Ecto-sp13_S_contig78439.19106.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78439.19106.1
Unique NamemRNA_Ecto-sp13_S_contig78439.19106.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78439.19106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78439contigEcto-sp13_S_contig78439:377..627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_003190.1
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464055.2847915-CDS-Ecto-sp13_S_contig78439:376..4501681464055.2847915-CDS-Ecto-sp13_S_contig78439:376..450Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78439 377..450 -
1681464055.2958686-CDS-Ecto-sp13_S_contig78439:569..6271681464055.2958686-CDS-Ecto-sp13_S_contig78439:569..627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78439 570..627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78439.19106.1prot_Ecto-sp13_S_contig78439.19106.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78439 377..627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78439.19106.1

>prot_Ecto-sp13_S_contig78439.19106.1 ID=prot_Ecto-sp13_S_contig78439.19106.1|Name=mRNA_Ecto-sp13_S_contig78439.19106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
NDKTGAKPDTVWRGGIPFSGNFRGKRASSRPWRPPTHPPTHPAC
back to top

mRNA from alignment at Ecto-sp13_S_contig78439:377..627-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78439.19106.1 ID=mRNA_Ecto-sp13_S_contig78439.19106.1|Name=mRNA_Ecto-sp13_S_contig78439.19106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=251bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78439:377..627- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGACAAGACGGGAGCGAAACCGGATACTGTTTGGAGGGGGGGCATTCC
TTTCAGTGGTGTGCGTTGACTCCAGCCAGAGCACTCTTGCGGCATACAGC
CGGCGCTACATACAGGAGTACACAACGGCGGTAGAAAAAAACGTTGGTTC
ATACGTCCGCGTTCGGACTCCTTTCAGGGAACTTCAGAGGGAAGCGAGCC
TCAAGCCGGCCGTGGCGTCCACCTACCCACCCACCCACCCATCCTGCATG
C
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78439:377..627-

>mRNA_Ecto-sp13_S_contig78439.19106.1 ID=mRNA_Ecto-sp13_S_contig78439.19106.1|Name=mRNA_Ecto-sp13_S_contig78439.19106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78439:377..627- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGACAAGACGGGAGCGAAACCGGATACTGTTTGGAGGGGGGGCATTCC
TTTCAGTGGGAACTTCAGAGGGAAGCGAGCCTCAAGCCGGCCGTGGCGTC
CACCTACCCACCCACCCACCCATCCTGCATGC
back to top