prot_Ecto-sp13_S_contig12273.1910.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12273.1910.1
Unique Nameprot_Ecto-sp13_S_contig12273.1910.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length104
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12273.1910.1 vs. uniprot
Match: A0A6H5L7K0_9PHAE (Ribosomal_L12 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7K0_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 6.120e-54
Identity = 95/103 (92.23%), Postives = 97/103 (94.17%), Query Frame = 0 
Query:    1 SGGRRCRTPTPAAAWPLVQRGLDASSKHTAAGPSSTRGCATVVAATPPAVAAAAARGRVLPAGLPPVYRPDTGNINGGRIRFSTTAGADAATEDTSGPPAAEA 103
            SGGRRCRTP PAAAWPLVQRGLD SSKHTA GPSSTRGCATVVAATPPAVAAAAARGRVL AGLPPVYRPD GN NGGR+RFSTTAGADAATEDTSGPPAA+A
Sbjct:   13 SGGRRCRTPAPAAAWPLVQRGLDVSSKHTAVGPSSTRGCATVVAATPPAVAAAAARGRVLQAGLPPVYRPDAGNGNGGRVRFSTTAGADAATEDTSGPPAAKA 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12273.1910.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7K0_9PHAE6.120e-5492.23Ribosomal_L12 domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12273contigEcto-sp13_S_contig12273:1723..2687 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12273.1910.1mRNA_Ecto-sp13_S_contig12273.1910.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12273 1721..2687 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12273.1910.1 ID=prot_Ecto-sp13_S_contig12273.1910.1|Name=mRNA_Ecto-sp13_S_contig12273.1910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
SGGRRCRTPTPAAAWPLVQRGLDASSKHTAAGPSSTRGCATVVAATPPAV
AAAAARGRVLPAGLPPVYRPDTGNINGGRIRFSTTAGADAATEDTSGPPA
AEAG
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