mRNA_Ecto-sp13_S_contig78430.19104.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78430.19104.1
Unique NamemRNA_Ecto-sp13_S_contig78430.19104.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig78430.19104.1 vs. uniprot
Match: D7FN20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN20_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 2.040e-45
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1
Query:    4 RYFRASKTVSCLAFSRDGGMLVVGERGHQPSATVWNLATGAVVRELAGGHRFGIGCISFTPSGGGVVTMGFKHDRMLRV 240
            RYFRASKTVSCLAFSRDGGMLVVGERGHQPSATVWNLATGAV+RELAGGHRFGIGCISFTPSGGGVVTMGFKHDRMLRV
Sbjct:   85 RYFRASKTVSCLAFSRDGGMLVVGERGHQPSATVWNLATGAVIRELAGGHRFGIGCISFTPSGGGVVTMGFKHDRMLRV 163          
BLAST of mRNA_Ecto-sp13_S_contig78430.19104.1 vs. uniprot
Match: A0A6H5L628_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L628_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.820e-31
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 1
Query:   61 MLVVGERGHQPSATVWNLATGAVVRELAGGHRFGIGCISFTPSGGGVVTMGFKHDRMLRV 240
            MLVVGERGHQPSATVWNLATGAVVREL GGHRFGIGCI FTPSGGGV+TMGFKHDRMLRV
Sbjct:    1 MLVVGERGHQPSATVWNLATGAVVRELVGGHRFGIGCILFTPSGGGVITMGFKHDRMLRV 60          
BLAST of mRNA_Ecto-sp13_S_contig78430.19104.1 vs. uniprot
Match: A0A835ZC14_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC14_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.580e-30
Identity = 53/79 (67.09%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    4 RYFRASKTVSCLAFSRDGGMLVVGERGHQPSATVWNLATGAVVRELAGGHRFGIGCISFTPSGGGVVTMGFKHDRMLRV 240
            RYFRA KTVSCLAFSRDG ML VGERGH PS  VW LATG V+ EL GGH++G+ C++F+P G  +V++GFK+DRML+V
Sbjct:  270 RYFRAGKTVSCLAFSRDGSMLAVGERGHLPSVIVWKLATGVVLAELKGGHKYGVACLAFSPQGNALVSVGFKYDRMLQV 348          
BLAST of mRNA_Ecto-sp13_S_contig78430.19104.1 vs. uniprot
Match: A0A6G0X4Q9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4Q9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.260e-14
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    4 RYFRASKTVSCLAFSRDGGMLVVGERGHQPSATVWNLATGAVVRELAGGHRFGIGCISFTPSGGGVVTMGFKHDRMLRV 240
            RY+R  KTVS +AFS DG ++ + E+GH PS TVW++ TG +  E    H++GI  ++F+     +V+MGF HD+ML V
Sbjct:   53 RYYRVEKTVSAVAFSLDGTLIAIAEKGHSPSITVWSVETGQLKAEFKR-HKYGIVSLAFSADTQYLVSMGFVHDKMLYV 130          
BLAST of mRNA_Ecto-sp13_S_contig78430.19104.1 vs. uniprot
Match: UPI00139019F1 (mitogen-activated protein kinase-binding protein 1-like n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00139019F1)

HSP 1 Score: 73.9 bits (180), Expect = 2.050e-14
Identity = 32/77 (41.56%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   22 KTVSCLAFSRDGGMLVVGERGHQPSATVWNLA--TGAVVRELAGGHRFGIGCISFTPSGGGVVTMGFKHDRMLRVRN 246
            KT++ +AFSRDG  L  GE GH PS  VW++   T   V E+A GH+ G+ C++F+P+   +V++G++HD ++ + N
Sbjct:    7 KTITAVAFSRDGKYLATGESGHLPSVRVWSMEDPTNPQVSEMAKGHKHGVACVAFSPNLKYLVSVGYQHDMLINIWN 83          
BLAST of mRNA_Ecto-sp13_S_contig78430.19104.1 vs. uniprot
Match: A7RJA6_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RJA6_NEMVE)

HSP 1 Score: 73.9 bits (180), Expect = 1.350e-13
Identity = 32/77 (41.56%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   22 KTVSCLAFSRDGGMLVVGERGHQPSATVWNLA--TGAVVRELAGGHRFGIGCISFTPSGGGVVTMGFKHDRMLRVRN 246
            KT++ +AFSRDG  L  GE GH PS  VW++   T   V E+A GH+ G+ C++F+P+   +V++G++HD ++ + N
Sbjct:    7 KTITAVAFSRDGKYLATGESGHLPSVRVWSMEDPTNPQVSEMAKGHKHGVACVAFSPNLKYLVSVGYQHDMLINIWN 83          
BLAST of mRNA_Ecto-sp13_S_contig78430.19104.1 vs. uniprot
Match: A0A7J7MFD5_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MFD5_9MAGN)

HSP 1 Score: 70.5 bits (171), Expect = 2.520e-12
Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   13 RASKTVSCLA-FSRDGGMLVVGERGHQPSATVWNLATGAVVRELAGGHRFGIGCISFTPSGGGVVTMGFKHD 225
            R  K +SC+A  SRDGG +  GE GHQP+  VW+ ++  ++ EL   H+FG+ CISF+P G  +V++G+ HD
Sbjct:   69 RMPKPLSCVAVLSRDGGFIAAGESGHQPAVLVWDYSSRTLLCELKV-HQFGVTCISFSPDGKHLVSVGYPHD 139          
BLAST of mRNA_Ecto-sp13_S_contig78430.19104.1 vs. uniprot
Match: A0A485LJ37_9STRA (Aste57867_21552 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJ37_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.530e-12
Identity = 31/77 (40.26%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    4 RYFRASKTVSCLAFSRDGGMLVVGERGHQPSATVWNLATGAVVRELAGGHRFGIGCISFTPSGGGVVTMGFKHDRML 234
            RY+R  + VS +AFS DG +L + E+GH+PS TVW++ TG +  E    H++G+  ++F+     +V++GF  D+ML
Sbjct:   54 RYYRVERAVSAVAFSPDGKLLAIAEKGHEPSITVWDVETGQLKAEFKK-HKYGVVALAFSADARYLVSVGFVFDKML 129          
BLAST of mRNA_Ecto-sp13_S_contig78430.19104.1 vs. uniprot
Match: V4BSL8_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BSL8_LOTGI)

HSP 1 Score: 70.1 bits (170), Expect = 3.380e-12
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   22 KTVSCLAFSRDGGMLVVGERGHQPSATVWNLATGAVVRELAGGHRFGIGCISFTPSGGGVVTMGFKHDRMLRVRN 246
            KT++ LAFS+DG  LV GE GH P+  VW++   + V E  G H F + C++F P+   +V++G +HD+M+ V N
Sbjct:   54 KTITALAFSKDGKHLVTGEAGHLPAVRVWDVEEKSQVAEFHG-HNFRVNCVAFFPNSKYIVSIGSQHDKMVNVWN 127          
BLAST of mRNA_Ecto-sp13_S_contig78430.19104.1 vs. uniprot
Match: A0A397BB06_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BB06_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.330e-12
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    4 RYFRASKTVSCLAFSRDGGMLVVGERGHQPSATVWNLATGAVVRELAGGHRFGIGCISFTPSGGGVVTMGFKHDRML 234
            RY+R  K VS +AFS DG +L + E+G  PS TVW++ TG +  E    H++G+  ++F+     +V+MG  HD+ML
Sbjct:   54 RYYRVEKPVSSIAFSVDGALLAIAEKGQAPSITVWDVETGQLKAEFKR-HKYGVIAMAFSADSRFLVSMGLVHDKML 129          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78430.19104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN20_ECTSI2.040e-4598.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L628_9PHAE3.820e-3195.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZC14_9STRA3.580e-3067.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6G0X4Q9_9STRA1.260e-1445.57Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI00139019F12.050e-1441.56mitogen-activated protein kinase-binding protein 1... [more]
A7RJA6_NEMVE1.350e-1341.56Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A7J7MFD5_9MAGN2.520e-1245.83Uncharacterized protein n=1 Tax=Kingdonia uniflora... [more]
A0A485LJ37_9STRA2.530e-1240.26Aste57867_21552 protein n=1 Tax=Aphanomyces stella... [more]
V4BSL8_LOTGI3.380e-1242.67Uncharacterized protein (Fragment) n=1 Tax=Lottia ... [more]
A0A397BB06_9STRA6.330e-1241.56Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78430contigEcto-sp13_S_contig78430:94..339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score164.9
Seed ortholog evalue1.6e-38
Seed eggNOG ortholog2880.D7FN20
Preferred nameWDR90
Model size246
KEGG koko:K14962,ko:K21763
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Mitogen-activated protein
EggNOG OGsKOG1408@1,KOG1408@2759
Cds size246
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464055.2175622-CDS-Ecto-sp13_S_contig78430:93..3391681464055.2175622-CDS-Ecto-sp13_S_contig78430:93..339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78430 94..339 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78430.19104.1prot_Ecto-sp13_S_contig78430.19104.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78430 94..339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78430.19104.1

>prot_Ecto-sp13_S_contig78430.19104.1 ID=prot_Ecto-sp13_S_contig78430.19104.1|Name=mRNA_Ecto-sp13_S_contig78430.19104.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
KRYFRASKTVSCLAFSRDGGMLVVGERGHQPSATVWNLATGAVVRELAGG
HRFGIGCISFTPSGGGVVTMGFKHDRMLRVRN
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mRNA from alignment at Ecto-sp13_S_contig78430:94..339-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78430.19104.1 ID=mRNA_Ecto-sp13_S_contig78430.19104.1|Name=mRNA_Ecto-sp13_S_contig78430.19104.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78430:94..339- (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAGGTACTTTCGTGCCAGTAAAACGGTAAGCTGCCTGGCTTTCTCCAG AGATGGAGGAATGCTGGTGGTGGGCGAGAGGGGACATCAGCCGTCGGCCA CCGTGTGGAACCTTGCCACGGGTGCGGTTGTCCGGGAGCTGGCGGGCGGG CACCGGTTCGGGATTGGCTGCATATCGTTCACGCCTAGCGGGGGTGGCGT CGTTACGATGGGTTTCAAGCATGACCGGATGCTGAGGGTAAGAAAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78430:94..339-

>mRNA_Ecto-sp13_S_contig78430.19104.1 ID=mRNA_Ecto-sp13_S_contig78430.19104.1|Name=mRNA_Ecto-sp13_S_contig78430.19104.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78430:94..339- (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAGGTACTTTCGTGCCAGTAAAACGGTAAGCTGCCTGGCTTTCTCCAG
AGATGGAGGAATGCTGGTGGTGGGCGAGAGGGGACATCAGCCGTCGGCCA
CCGTGTGGAACCTTGCCACGGGTGCGGTTGTCCGGGAGCTGGCGGGCGGG
CACCGGTTCGGGATTGGCTGCATATCGTTCACGCCTAGCGGGGGTGGCGT
CGTTACGATGGGTTTCAAGCATGACCGGATGCTGAGGGTAAGAAAT
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