prot_Ecto-sp13_S_contig7840.19102.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7840.19102.1
Unique Nameprot_Ecto-sp13_S_contig7840.19102.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length51
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7840.19102.1 vs. uniprot
Match: A0A6H5JBI8_9PHAE (Threonine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBI8_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.630e-6
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 
Query:    1 MARFPQQRGLVSALAVGLAMATRVASF 27
            MARFPQQRGLVSALAVGLAMATRVASF
Sbjct:    1 MARFPQQRGLVSALAVGLAMATRVASF 27
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7840.19102.1 vs. uniprot
Match: D7FSY5_ECTSI (Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY5_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 5.690e-6
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 0 
Query:    1 MARFPQQRGLVSALAVGLAMATRVASF 27
            MARFPQQRGLVSALAVGLAM TRVASF
Sbjct:    1 MARFPQQRGLVSALAVGLAMTTRVASF 27
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7840.19102.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBI8_9PHAE1.630e-6100.00Threonine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP... [more]
D7FSY5_ECTSI5.690e-696.30Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculo... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..51
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7840contigEcto-sp13_S_contig7840:6350..6704 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7840.19102.1mRNA_Ecto-sp13_S_contig7840.19102.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7840 6350..6704 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7840.19102.1 ID=prot_Ecto-sp13_S_contig7840.19102.1|Name=mRNA_Ecto-sp13_S_contig7840.19102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
MARFPQQRGLVSALAVGLAMATRVASFSHPYGWQVKLWVSAACNSSVMFY
E
back to top