mRNA_Ecto-sp13_S_contig7840.19102.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7840.19102.1
Unique NamemRNA_Ecto-sp13_S_contig7840.19102.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7840.19102.1 vs. uniprot
Match: A0A6H5JBI8_9PHAE (Threonine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBI8_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.630e-6
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:    1 MARFPQQRGLVSALAVGLAMATRVASF 81
            MARFPQQRGLVSALAVGLAMATRVASF
Sbjct:    1 MARFPQQRGLVSALAVGLAMATRVASF 27
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BLAST of mRNA_Ecto-sp13_S_contig7840.19102.1 vs. uniprot
Match: D7FSY5_ECTSI (Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY5_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 5.690e-6
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 MARFPQQRGLVSALAVGLAMATRVASF 81
            MARFPQQRGLVSALAVGLAM TRVASF
Sbjct:    1 MARFPQQRGLVSALAVGLAMTTRVASF 27
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7840.19102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBI8_9PHAE1.630e-6100.00Threonine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP... [more]
D7FSY5_ECTSI5.690e-696.30Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7840contigEcto-sp13_S_contig7840:6350..6704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size153
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_006800.1
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464055.0071263-CDS-Ecto-sp13_S_contig7840:6349..64321681464055.0071263-CDS-Ecto-sp13_S_contig7840:6349..6432Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7840 6350..6432 +
1681464055.0195844-CDS-Ecto-sp13_S_contig7840:6634..67041681464055.0195844-CDS-Ecto-sp13_S_contig7840:6634..6704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7840 6635..6704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7840.19102.1prot_Ecto-sp13_S_contig7840.19102.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7840 6350..6704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7840.19102.1

>prot_Ecto-sp13_S_contig7840.19102.1 ID=prot_Ecto-sp13_S_contig7840.19102.1|Name=mRNA_Ecto-sp13_S_contig7840.19102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
MARFPQQRGLVSALAVGLAMATRVASFSHPYGWQVKLWVSAACNSSVMFY
E
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mRNA from alignment at Ecto-sp13_S_contig7840:6350..6704+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7840.19102.1 ID=mRNA_Ecto-sp13_S_contig7840.19102.1|Name=mRNA_Ecto-sp13_S_contig7840.19102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=355bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7840:6350..6704+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCGATTCCCGCAGCAGAGAGGACTCGTCTCGGCCCTTGCGGTGGG
CCTTGCGATGGCCACGAGGGTGGCTTCTTTTAGGTGAAATATGAATGCAG
TAGTTGATGCACAACGTACGTGAGGCCCTCTCTGTCATCACATCTCACTT
GACTGCTACACGCTGACAACATACAAACACTGCCTGCTGCTGCTGCTGCC
AGTGCTTCACGTAGGCGTCGTTCGTGTGGCACGGCGTGACAATCAAGAAC
GTTGCTTACCGTTGGGAATAATTCAAACTGCCAAGTCATCCTTATGGGTG
GCAGGTGAAGTTATGGGTGTCAGCGGCATGCAACAGCAGCGTTATGTTTT
ACGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7840:6350..6704+

>mRNA_Ecto-sp13_S_contig7840.19102.1 ID=mRNA_Ecto-sp13_S_contig7840.19102.1|Name=mRNA_Ecto-sp13_S_contig7840.19102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7840:6350..6704+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCGATTCCCGCAGCAGAGAGGACTCGTCTCGGCCCTTGCGGTGGG
CCTTGCGATGGCCACGAGGGTGGCTTCTTTTAGTCATCCTTATGGGTGGC
AGGTGAAGTTATGGGTGTCAGCGGCATGCAACAGCAGCGTTATGTTTTAC
GAA
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