mRNA_Ecto-sp13_S_contig12273.1910.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12273.1910.1
Unique NamemRNA_Ecto-sp13_S_contig12273.1910.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12273.1910.1 vs. uniprot
Match: A0A6H5L7K0_9PHAE (Ribosomal_L12 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7K0_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 6.120e-54
Identity = 95/103 (92.23%), Postives = 97/103 (94.17%), Query Frame = 1 
Query:    1 SGGRRCRTPTPAAAWPLVQRGLDASSKHTAAGPSSTRGCATVVAATPPAVAAAAARGRVLPAGLPPVYRPDTGNINGGRIRFSTTAGADAATEDTSGPPAAEA 309
            SGGRRCRTP PAAAWPLVQRGLD SSKHTA GPSSTRGCATVVAATPPAVAAAAARGRVL AGLPPVYRPD GN NGGR+RFSTTAGADAATEDTSGPPAA+A
Sbjct:   13 SGGRRCRTPAPAAAWPLVQRGLDVSSKHTAVGPSSTRGCATVVAATPPAVAAAAARGRVLQAGLPPVYRPDAGNGNGGRVRFSTTAGADAATEDTSGPPAAKA 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12273.1910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7K0_9PHAE6.120e-5492.23Ribosomal_L12 domain-containing protein n=2 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12273contigEcto-sp13_S_contig12273:1721..2687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score67.0
Seed ortholog evalue5.9e-09
Seed eggNOG ortholog2880.D7FPT9
Model size315
KEGG koko:K02935
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0222@1,KOG1715@2759
Cds size312
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462652.8310745-CDS-Ecto-sp13_S_contig12273:1722..19601681462652.8310745-CDS-Ecto-sp13_S_contig12273:1722..1960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12273 1723..1960 -
1681462652.8413746-CDS-Ecto-sp13_S_contig12273:2613..26871681462652.8413746-CDS-Ecto-sp13_S_contig12273:2613..2687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12273 2614..2687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12273.1910.1prot_Ecto-sp13_S_contig12273.1910.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12273 1723..2687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12273.1910.1

>prot_Ecto-sp13_S_contig12273.1910.1 ID=prot_Ecto-sp13_S_contig12273.1910.1|Name=mRNA_Ecto-sp13_S_contig12273.1910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
SGGRRCRTPTPAAAWPLVQRGLDASSKHTAAGPSSTRGCATVVAATPPAV
AAAAARGRVLPAGLPPVYRPDTGNINGGRIRFSTTAGADAATEDTSGPPA
AEAG
back to top

mRNA from alignment at Ecto-sp13_S_contig12273:1721..2687-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12273.1910.1 ID=mRNA_Ecto-sp13_S_contig12273.1910.1|Name=mRNA_Ecto-sp13_S_contig12273.1910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=967bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12273:1721..2687- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGGGGACGAAGATGTAGGACGCCAACGCCGGCGGCAGCATGGCCACT
GGTGCAACGCGGGCTAGATGCTAGGTGAGAAGCTGGAGGCTGCACGCGGC
GCGCTCCGAGCAGTATGTTTGTGTTTCAGCGCGTGCTGTCCTCAACCGAG
TGGACTCTGTCGGTCGTTTGCAACACGAACAAGCGCGTGCTACGAGAGAC
AGACGTGCGGTGTTGGTTGCTCCAGTGTGTGTCTTCGTCGATTGCCTGTC
TCGGGCATCTACCGTTAAAGTGGCAGGCAATCGGATGACGTACACGCGCT
TTGGTCCCGAAGCTTCTGTTCTTGACGCGAGAATCGCCGTGTTGCTTGTG
GCATCGTCGTCGAACTCGGGTCTCATCGCCTGTGTTCTGTGCGTGTCATG
TGACTAATCGCTGCTGTTCTGTCAGTTATGAATCGCACAGCACAGCACGA
AGGTTTGACTGCCATGCTCTGCTATAGCAGTACCCTAAGAAGATCCAAAG
CAGATTCGTTTCTTGCGAAAATTCGAACGTAGTCGCTCAGCGGCTTCGTG
TTGTCAGCATTAAGTGTGGTACAGCTCCGGTACTCGGCGTCGTTGCGTCT
CTCGAAAAGGGATAAGTGAGTTTTTTACTCCTGTCCTCTTATCAAGCTCA
CGTGCGGAGCGAGTCCTCCATCGAACGTCCTCCCACGCGTCGAACTGCTG
TCTCTTGCTCCCCTTTCGACACAGCAGCAGCAAACACACAGCAGCAGGAC
CTTCCTCTACCAGAGGATGCGCTACGGTGGTAGCGGCGACACCACCAGCA
GTAGCAGCAGCGGCAGCACGAGGAAGAGTTCTGCCGGCAGGACTCCCGCC
TGTCTACAGACCAGACACCGGCAACATCAACGGCGGCCGAATCAGGTTCT
CGACCACCGCTGGTGCTGATGCCGCCACCGAGGACACGAGCGGGCCACCA
GCTGCAGAGGCCGGCAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12273:1721..2687-

>mRNA_Ecto-sp13_S_contig12273.1910.1 ID=mRNA_Ecto-sp13_S_contig12273.1910.1|Name=mRNA_Ecto-sp13_S_contig12273.1910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12273:1721..2687- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGGGGACGAAGATGTAGGACGCCAACGCCGGCGGCAGCATGGCCACT
GGTGCAACGCGGGCTAGATGCTAGCAGCAAACACACAGCAGCAGGACCTT
CCTCTACCAGAGGATGCGCTACGGTGGTAGCGGCGACACCACCAGCAGTA
GCAGCAGCGGCAGCACGAGGAAGAGTTCTGCCGGCAGGACTCCCGCCTGT
CTACAGACCAGACACCGGCAACATCAACGGCGGCCGAATCAGGTTCTCGA
CCACCGCTGGTGCTGATGCCGCCACCGAGGACACGAGCGGGCCACCAGCT
GCAGAGGCCGGC
back to top