mRNA_Ecto-sp13_S_contig784.19099.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig784.19099.1
Unique NamemRNA_Ecto-sp13_S_contig784.19099.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig784.19099.1 vs. uniprot
Match: D8LEZ2_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ2_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 7.520e-124
Identity = 199/209 (95.22%), Postives = 201/209 (96.17%), Query Frame = -1 
Query:   76 RVLGARIRRLEASDFDLFASDETLWRQSDGPPPAEMALQHGGDVAGVPISRKKLEPFWRWFWQAVTTLRRTPAWSTGLNGPALGFAGFMKKDTALALLSSAEPGTFLVRXXXXXXXXXXXXYVRKRRGTVVSGIVNVSSAGALSVEKRAGERTFHDLDDLVLSTEQLKFLHPGVRKQEVFVRPSRRESWSADIRAEVQGISRRQSMPPM 702
            RVLGARIR LEASDFDLFASDE LWRQSDGPPPAE ALQHGGDVAGVPISRKKLEPFWRWFWQAVTTLRRTPAWSTGL+GPALGFAGFMKKDTAL LLSSAEPGTFLVR XXXXXXXXXX YVRKRRGTVVSGIVNVSSAGALSVEKRAGERTFHDLDDLVLSTEQLKFLHPGVRKQEVF RP RRESWSADIRAEV+GISRRQSMPPM
Sbjct:  514 RVLGARIRPLEASDFDLFASDEALWRQSDGPPPAETALQHGGDVAGVPISRKKLEPFWRWFWQAVTTLRRTPAWSTGLHGPALGFAGFMKKDTALTLLSSAEPGTFLVRFXXXXXXXXXXHYVRKRRGTVVSGIVNVSSAGALSVEKRAGERTFHDLDDLVLSTEQLKFLHPGVRKQEVFARPRRRESWSADIRAEVEGISRRQSMPPM 722
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BLAST of mRNA_Ecto-sp13_S_contig784.19099.1 vs. uniprot
Match: A0A6H5KXM6_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM6_9PHAE)

HSP 1 Score: 371 bits (953), Expect = 4.740e-119
Identity = 185/208 (88.94%), Postives = 190/208 (91.35%), Query Frame = -1 
Query:   79 RVLGARIRRLEASDFDLFASDETLWRQSDGPPPAEMALQHGGDVAGVPISRKKLEPFWRWFWQAVTTLRRTPAWSTGLNGPALGFAGFMKKDTALALLSSAEPGTFLVRXXXXXXXXXXXXYVRKRRGTVVSGIVNVSSAGALSVEKRAGERTFHDLDDLVLSTEQLKFLHPGVRKQEVFVRPSRRESWSADIRAEVQGISRRQSMPP 702
            RVLGARIRRLEASDFDLFASD+ LWRQSDGPPPAEMALQHGGDVAGVPISRKKLEPFWRWFWQAVTTLRRTPAWSTGLNGPALGFAGFMKK+TALALLSS EPGTFLVR            YVRKRRGTVVSGIVNVSSAGALSVEKRAGERTFHDLDDLVLST QLKFLHPG+RKQEVF RP RRESWSAD+RA V+GISRRQSMPP
Sbjct:  799 RVLGARIRRLEASDFDLFASDQALWRQSDGPPPAEMALQHGGDVAGVPISRKKLEPFWRWFWQAVTTLRRTPAWSTGLNGPALGFAGFMKKETALALLSSEEPGTFLVRFSTSKPGALAVHYVRKRRGTVVSGIVNVSSAGALSVEKRAGERTFHDLDDLVLSTGQLKFLHPGLRKQEVFARPRRRESWSADVRAVVEGISRRQSMPP 1006
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig784.19099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEZ2_ECTSI7.520e-12495.22SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KXM6_9PHAE4.740e-11988.94SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig784contigEcto-sp13_S_contig784:17609..18310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size704
Hectar predicted targeting categoryother localisation
Exons1
Cds size480
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464054.4598618-CDS-Ecto-sp13_S_contig784:17608..180881681464054.4598618-CDS-Ecto-sp13_S_contig784:17608..18088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig784 17609..18088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464054.471357-UTR-Ecto-sp13_S_contig784:18088..183101681464054.471357-UTR-Ecto-sp13_S_contig784:18088..18310Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig784 18089..18310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig784.19099.1prot_Ecto-sp13_S_contig784.19099.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig784 17609..18088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig784.19099.1

>prot_Ecto-sp13_S_contig784.19099.1 ID=prot_Ecto-sp13_S_contig784.19099.1|Name=mRNA_Ecto-sp13_S_contig784.19099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
PPGGNASRPALYNAVAGGLRPFVPSHRRHGLSPRDPLHFRTDVGRPAFSP
ARPYKHLLLPHPGVQELELLRGQDQVIQVVERPLPRSLLDRQSPGAAHVH
DPANNRSSAFSDVVHGEGPRFAGGEPYQERSGLRAREQGQRRVLLHEPGE
AQRGAVEPR*
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mRNA from alignment at Ecto-sp13_S_contig784:17609..18310+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig784.19099.1 ID=mRNA_Ecto-sp13_S_contig784.19099.1|Name=mRNA_Ecto-sp13_S_contig784.19099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig784:17609..18310+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCCCGGAGGAAATGCCAGCCGGCCTGCTCTCTATAACGCCGTCGCGGG
CGGCTTGCGTCCATTCGTGCCATCACATCGGAGGCATGGACTGTCGCCGC
GAGATCCCCTGCACTTCCGCACGGATGTCGGCCGACCAGCTTTCTCTCCG
GCTCGGCCTTACAAACACCTCCTGCTTCCGCACCCCGGGGTGCAAGAACT
TGAGCTGCTCCGTGGACAGGACCAGGTCATCCAGGTCGTGGAACGTCCGC
TCCCCCGCTCGCTTCTCGACCGACAGAGCCCCGGCGCTGCTCACGTTCAC
GATCCCGCTAACAACCGTTCCTCTGCGTTTTCGGACGTAGTGCACGGCGA
GGGCCCCCGGTTTGCTGGTGGAGAACCGTACCAGGAACGTTCCGGGCTCC
GCGCTCGAGAGCAGGGCCAGCGCCGTGTCCTTCTTCATGAACCCGGCGAA
GCCCAGCGCGGGGCCGTTGAGCCCCGTTGACCACGCCGGTGTCCGCCTCA
GCGTGGTGACCGCCTGCCAGAACCACCGCCAGAAGGGCTCCAGCTTCTTG
CGGGAGATAGGCACCCCGGCCACGTCCCCGCCGTGCTGCAGCGCCATCTC
CGCGGGAGGGGGCCCATCAGACTGCCGCCACAGGGTCTCATCCGACGCGA
AAAGATCGAAGTCGCTAGCTTCGAGGCGGCGGATCCTAGCCCCGAGGACT
CG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig784:17609..18310+

>mRNA_Ecto-sp13_S_contig784.19099.1 ID=mRNA_Ecto-sp13_S_contig784.19099.1|Name=mRNA_Ecto-sp13_S_contig784.19099.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig784:17609..18310+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCCCGGAGGAAATGCCAGCCGGCCTGCTCTCTATAACGCCGTCGCGGG
CGGCTTGCGTCCATTCGTGCCATCACATCGGAGGCATGGACTGTCGCCGC
GAGATCCCCTGCACTTCCGCACGGATGTCGGCCGACCAGCTTTCTCTCCG
GCTCGGCCTTACAAACACCTCCTGCTTCCGCACCCCGGGGTGCAAGAACT
TGAGCTGCTCCGTGGACAGGACCAGGTCATCCAGGTCGTGGAACGTCCGC
TCCCCCGCTCGCTTCTCGACCGACAGAGCCCCGGCGCTGCTCACGTTCAC
GATCCCGCTAACAACCGTTCCTCTGCGTTTTCGGACGTAGTGCACGGCGA
GGGCCCCCGGTTTGCTGGTGGAGAACCGTACCAGGAACGTTCCGGGCTCC
GCGCTCGAGAGCAGGGCCAGCGCCGTGTCCTTCTTCATGAACCCGGCGAA
GCCCAGCGCGGGGCCGTTGAGCCCCGTTGA
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