prot_Ecto-sp13_S_contig12272.1909.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12272.1909.1
Unique Nameprot_Ecto-sp13_S_contig12272.1909.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length94
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12272.1909.1 vs. uniprot
Match: A0A6H5JLY2_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY2_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.310e-45
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 0 
Query:    1 LDPSSSPTRAGSGRGRGDAAGGSRSPNRKRNYSQLATFGDENGAPSPFPSDGGSKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPQMN 94
            LDPSSSP+RAGSGR R +AA GSRSP RKRNYSQLATFGDENGAPSPFPSDGGSKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDP +N
Sbjct:  197 LDPSSSPSRAGSGRRRREAASGSRSPKRKRNYSQLATFGDENGAPSPFPSDGGSKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPHIN 290
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BLAST of mRNA_Ecto-sp13_S_contig12272.1909.1 vs. uniprot
Match: D8LCS2_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS2_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 4.630e-38
Identity = 77/94 (81.91%), Postives = 77/94 (81.91%), Query Frame = 0 
Query:    1 LDPSSSPTRAGSGRGRGDAAGGSRSPNRKRNYSQLATFGDENGAPSPFPSDGGSKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPQMN 94
            LDPSSSP RAG              P RKRNYSQLATFGDENGAPSPFPSDGG KNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPQMN
Sbjct:  167 LDPSSSPARAGXXXXXXXXXXXXXXPKRKRNYSQLATFGDENGAPSPFPSDGGPKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPQMN 260
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12272.1909.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLY2_9PHAE1.310e-4591.49MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LCS2_ECTSI4.630e-3881.91Myb-like DNA-binding domain containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12272contigEcto-sp13_S_contig12272:2193..3939 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12272.1909.1mRNA_Ecto-sp13_S_contig12272.1909.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12272 2193..3939 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12272.1909.1 ID=prot_Ecto-sp13_S_contig12272.1909.1|Name=mRNA_Ecto-sp13_S_contig12272.1909.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
LDPSSSPTRAGSGRGRGDAAGGSRSPNRKRNYSQLATFGDENGAPSPFPS
DGGSKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPQMN
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