prot_Ecto-sp13_S_contig7835.19093.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7835.19093.1
Unique Nameprot_Ecto-sp13_S_contig7835.19093.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length376
Homology
BLAST of mRNA_Ecto-sp13_S_contig7835.19093.1 vs. uniprot
Match: A0A6H5K543_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K543_9PHAE)

HSP 1 Score: 529 bits (1363), Expect = 1.220e-186
Identity = 300/352 (85.23%), Postives = 309/352 (87.78%), Query Frame = 0
Query:    1 MMMEEALRFRGYRRRRVGDRRQHQEAARERADFRMSSENTPRTRRWPVAAVGLPLLLLLGSADKRVSALLQLDQVPNRTTNERSATFTYVCTPLDTTEDDGCDVKWSLDSAEWVPVALSANASVTVEDLFDGVHSLSLKNDYTADGRSETESVDYTWTVDTVPPDTIVDTGPSQDGEAPRPEEADPFLFFTFHCSEELCRYRYQFDNRVELTATWDVADGIGLMGQVSVTSVQQASGXXXXXXXXXXXXGSGKLQISVFLTAASSFSDPNDPHLMPSTVSIFNTGGAVPSSAGGTDGAGGVGSXXXXXXXXXXXXXXXXX--GALVVLVLGSPEVDSGTGDTVFSLSAEVEV 350
            MMME+ALR RGYRRRRVGDRRQHQE ARERA F MS+ NT RTRRW VAAVGL    LLG A  RVSALLQLDQVP RTTNERSATFTYVCTPLDTTEDDGCDVKWSLDSA WVPVALSANASVTVEDL DGVHSLSLKNDYTA+GRSETESVDYTWTVDTVPP+TIVDTGPSQDGEAPRPEEADPFLFFTFHCSE+LCRYRYQFDNR+ELTATWDVADGIGLMGQVSVTSVQQASGXXXXXXXXXXXX   KLQI+VFLTAASS+SDP+DP LMPSTVSIFNTGGAV S AG TDGAGGVGS                   GALVVLVLGSPEVDSGTGDTVFSLSAEVEV
Sbjct:    1 MMMEKALRVRGYRRRRVGDRRQHQEVARERAHFHMSTGNTRRTRRWSVAAVGL----LLGCAINRVSALLQLDQVPKRTTNERSATFTYVCTPLDTTEDDGCDVKWSLDSAGWVPVALSANASVTVEDLLDGVHSLSLKNDYTANGRSETESVDYTWTVDTVPPETIVDTGPSQDGEAPRPEEADPFLFFTFHCSEDLCRYRYQFDNRIELTATWDVADGIGLMGQVSVTSVQQASGXXXXXXXXXXXXXXXKLQINVFLTAASSYSDPDDPQLMPSTVSIFNTGGAVSSGAGDTDGAGGVGSSNSDSDGEEAATGGERAEEGALVVLVLGSPEVDSGTGDTVFSLSAEVEV 348          
BLAST of mRNA_Ecto-sp13_S_contig7835.19093.1 vs. uniprot
Match: D8LBK9_ECTSI (OmpA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK9_ECTSI)

HSP 1 Score: 555 bits (1429), Expect = 7.390e-178
Identity = 308/342 (90.06%), Postives = 316/342 (92.40%), Query Frame = 0
Query:   35 MSSENTPRTRRWPVAAVGLPLLLLLGSADKRVSALLQLDQVPNRTTNERSATFTYVCTPLDTTEDDGCDVKWSLDSAEWVPVALSANASVTVEDLFDGVHSLSLKNDYTADGRSETESVDYTWTVDTVPPDTIVDTGPSQDGEAPRPEEADPFLFFTFHCSEELCRYRYQFDNRVELTATWDVADGIGLMGQVSVTSVQQASGXXXXXXXXXXXXGSGKLQISVFLTAASSFSDPNDPHLMPSTVSIFNTGGAVPSSAGGTDGAGGVGSXXXXXXXXXXXXXXXXXGALVVLVLGSPEVDSGTGDTVFSLSAEVEVPELIGLNSTSLVVEVSTNSSVLLASA 376
            MSS NTPRTRRWP+AAVGL LLLL+GSA+ RVSALLQLDQVPNRTTNERSATFTYVCTPLDTTEDDGCDV+WSLDSA WVPVALSANASVTVEDL DGVHSLSLKNDYTADGRSETESVDYTWTVDTVPPDTIVDTGPSQDGEAPRPEEADPFLFFTFHCSE+LCRYRYQFDNRVELTATWDVADGIGLMGQVSVTSVQQASGXXXXXXXXXXXX  GKLQISVFLTAASS+SDP+DP LMPSTVSIFNTGGAVPSSAGGTDGAG VGS                 GALVVLVLGSPEVDSGTGDTVFSLSAEVEVP+LIGLNSTSLVVEVSTNSSVLLASA
Sbjct:    1 MSSGNTPRTRRWPLAAVGLLLLLLIGSANNRVSALLQLDQVPNRTTNERSATFTYVCTPLDTTEDDGCDVEWSLDSAVWVPVALSANASVTVEDLLDGVHSLSLKNDYTADGRSETESVDYTWTVDTVPPDTIVDTGPSQDGEAPRPEEADPFLFFTFHCSEDLCRYRYQFDNRVELTATWDVADGIGLMGQVSVTSVQQASGXXXXXXXXXXXXXXGKLQISVFLTAASSYSDPDDPQLMPSTVSIFNTGGAVPSSAGGTDGAGVVGSSNSDSDGEEAATGGGEEGALVVLVLGSPEVDSGTGDTVFSLSAEVEVPDLIGLNSTSLVVEVSTNSSVLLASA 342          
BLAST of mRNA_Ecto-sp13_S_contig7835.19093.1 vs. uniprot
Match: A0A6H5KAC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC7_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 8.920e-45
Identity = 89/107 (83.18%), Postives = 91/107 (85.05%), Query Frame = 0
Query:    1 MMMEEALRFRGYRRRRVGDRRQHQEAARERADFRMSSENTPRTRRWPVAAVGLPLLLLLGSADKRVSALLQLDQVPNRTTNERSATFTYVCTPLDTTEDDGCDVKWS 107
            MMME+ALR RGYRRRRVGDRRQHQE ARERA F MS+ NT RTRRW VAAVGL    LLG A  RVSALLQLDQVP RTTNERSATFTYVCTPLDTTEDDGCDVK S
Sbjct:    1 MMMEKALRVRGYRRRRVGDRRQHQEVARERAHFHMSTGNTRRTRRWSVAAVGL----LLGCAINRVSALLQLDQVPKRTTNERSATFTYVCTPLDTTEDDGCDVKVS 103          
BLAST of mRNA_Ecto-sp13_S_contig7835.19093.1 vs. uniprot
Match: A0A3M0Y1Q7_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=A0A3M0Y1Q7_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 3.120e-5
Identity = 44/128 (34.38%), Postives = 59/128 (46.09%), Query Frame = 0
Query:   99 DDGCDVKWSLDSAEWVPVALSANASVTVEDLFDGVHSLSLKNDYTADGRSETESVDYTWTVDTVPPDTIVDTGPSQDGEAPRPEEADPFLFFTFHCSEELCRYRYQFDNRVELTATWDVADGIGLMGQ 226
            DDG   +  LD  EW     S  + VT+ +L DG H+  ++    A G + TE+V Y+WTVDT PP     +GP+  G A      D  L  TF C+E  C      D  V  T T  V   +   G+
Sbjct:  105 DDGVTFECRLDGGEWS----SCTSPVTLTNLSDGAHTFEIRT-VDAAGNASTETVQYSWTVDTTPPVVTFQSGPAN-GMA-----TDVTL--TFSCNETGCVTECSLDGGVYATCTSPVMYNVPATGE 219          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7835.19093.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K543_9PHAE1.220e-18685.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBK9_ECTSI7.390e-17890.06OmpA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KAC7_9PHAE8.920e-4583.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3M0Y1Q7_9BACT3.120e-534.38Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 48..59
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 60..68
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..68
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 69..376

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7835contigEcto-sp13_S_contig7835:1868..7186 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7835.19093.1mRNA_Ecto-sp13_S_contig7835.19093.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7835 1720..7186 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7835.19093.1 ID=prot_Ecto-sp13_S_contig7835.19093.1|Name=mRNA_Ecto-sp13_S_contig7835.19093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=376bp
MMMEEALRFRGYRRRRVGDRRQHQEAARERADFRMSSENTPRTRRWPVAA
VGLPLLLLLGSADKRVSALLQLDQVPNRTTNERSATFTYVCTPLDTTEDD
GCDVKWSLDSAEWVPVALSANASVTVEDLFDGVHSLSLKNDYTADGRSET
ESVDYTWTVDTVPPDTIVDTGPSQDGEAPRPEEADPFLFFTFHCSEELCR
YRYQFDNRVELTATWDVADGIGLMGQVSVTSVQQASGSGSGGGTGDEEDG
SGKLQISVFLTAASSFSDPNDPHLMPSTVSIFNTGGAVPSSAGGTDGAGG
VGSSNSDSDGEEAAAGEGEGGALVVLVLGSPEVDSGTGDTVFSLSAEVEV
PELIGLNSTSLVVEVSTNSSVLLASA
back to top