mRNA_Ecto-sp13_S_contig78347.19092.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78347.19092.1
Unique NamemRNA_Ecto-sp13_S_contig78347.19092.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig78347.19092.1 vs. uniprot
Match: A0A6H5JPB9_9PHAE (ABC1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPB9_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.070e-42
Identity = 81/87 (93.10%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:    1 LAETLCRMRGAALKLGQMLSIQDESVIPPSLAKALDRVRQGADVMPSKQLHGQLEKNLGMDWRSKLAAFDETPIAAASIGQVRLSLL 261
            LAETLCRMRGAALKLGQMLSIQDESVIPPSLAKALDRVRQGADVMP KQLH QLEKNLGMDWRSKLAAFDETPIAAASIGQV  + L
Sbjct:  297 LAETLCRMRGAALKLGQMLSIQDESVIPPSLAKALDRVRQGADVMPLKQLHRQLEKNLGMDWRSKLAAFDETPIAAASIGQVHRAKL 383
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BLAST of mRNA_Ecto-sp13_S_contig78347.19092.1 vs. uniprot
Match: A0A835YMK7_9STRA (Protein required for ubiquinone biosynthesis and for respiratory growth n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMK7_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.060e-32
Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:    1 LAETLCRMRGAALKLGQMLSIQDESVIPPSLAKALDRVRQGADVMPSKQLHGQLEKNLGMDWRSKLAAFDETPIAAASIGQVRLSLL 261
            LAE LCRMRGAALKLGQMLSIQDE VIPP LAKAL+RVR GAD MP+KQLH QL   LG  WR++LA FDE P+AAASIGQV  + L
Sbjct:  304 LAEALCRMRGAALKLGQMLSIQDEGVIPPQLAKALERVRAGADTMPAKQLHAQLRAALGDGWRARLAEFDEAPLAAASIGQVHRAKL 390
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BLAST of mRNA_Ecto-sp13_S_contig78347.19092.1 vs. uniprot
Match: A0A1V9Z8E2_9STRA (ABC1 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8E2_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.230e-32
Identity = 64/87 (73.56%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:    1 LAETLCRMRGAALKLGQMLSIQDESVIPPSLAKALDRVRQGADVMPSKQLHGQLEKNLGMDWRSKLAAFDETPIAAASIGQVRLSLL 261
            LA+ LC MRGAALKLGQMLSIQDES IPP LA ALDRVRQGA +MP  QLH QL K  G DWRSK  +FDETP+AAASIGQV  ++L
Sbjct:  188 LADALCTMRGAALKLGQMLSIQDESTIPPQLALALDRVRQGAHIMPKAQLHAQLTKAWGDDWRSKFESFDETPVAAASIGQVHQAVL 274
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BLAST of mRNA_Ecto-sp13_S_contig78347.19092.1 vs. uniprot
Match: A0A7S2UK90_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UK90_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.930e-32
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 1 
Query:    1 LAETLCRMRGAALKLGQMLSIQDESVIPPSLAKALDRVRQGADVMPSKQLHGQLEKNLGMDWRSKLAAFDETPIAAASIGQV 246
            LA  LCRMRGAALKLGQMLSIQDES++PP+L+KAL +VRQGAD MPS QL+ QLE+  GMDW SKL+  +ETP AAASIGQV
Sbjct:   26 LALALCRMRGAALKLGQMLSIQDESLLPPALSKALTQVRQGADAMPSYQLNQQLEREWGMDWASKLSNMEETPFAAASIGQV 107
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BLAST of mRNA_Ecto-sp13_S_contig78347.19092.1 vs. uniprot
Match: A0A067CE53_SAPPC (Atypical/ABC1/ABC1-A protein kinase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CE53_SAPPC)

HSP 1 Score: 123 bits (309), Expect = 4.710e-31
Identity = 62/87 (71.26%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    1 LAETLCRMRGAALKLGQMLSIQDESVIPPSLAKALDRVRQGADVMPSKQLHGQLEKNLGMDWRSKLAAFDETPIAAASIGQVRLSLL 261
            LA+ LC MRGAALKLGQMLSIQDES IPP LA ALDRVRQGA +MP  QLH QL K  G DWR+K  +FDE P+AAASIGQV  ++L
Sbjct:  208 LADALCTMRGAALKLGQMLSIQDESTIPPQLALALDRVRQGAHIMPKAQLHAQLTKAWGDDWRAKFESFDENPVAAASIGQVHQAVL 294
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BLAST of mRNA_Ecto-sp13_S_contig78347.19092.1 vs. uniprot
Match: H3GJS1_PHYRM (ABC1 domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GJS1_PHYRM)

HSP 1 Score: 121 bits (304), Expect = 1.970e-30
Identity = 63/87 (72.41%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    1 LAETLCRMRGAALKLGQMLSIQDESVIPPSLAKALDRVRQGADVMPSKQLHGQLEKNLGMDWRSKLAAFDETPIAAASIGQVRLSLL 261
            LAETLC MRGAALKLGQMLSIQDE++IP  LA ALDRVR+ A VMP  QLH QLE  LG DWRSK   FD+ PIAAASIGQV  + L
Sbjct:  175 LAETLCTMRGAALKLGQMLSIQDEAMIPSKLAVALDRVRENAHVMPKDQLHQQLESELGEDWRSKFQEFDDVPIAAASIGQVHRATL 261
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BLAST of mRNA_Ecto-sp13_S_contig78347.19092.1 vs. uniprot
Match: A0A1V9ZC44_9STRA (ABC1 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC44_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.570e-30
Identity = 62/87 (71.26%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:    1 LAETLCRMRGAALKLGQMLSIQDESVIPPSLAKALDRVRQGADVMPSKQLHGQLEKNLGMDWRSKLAAFDETPIAAASIGQVRLSLL 261
            LA+ LC MRGAALKLGQMLSIQDES IPP LA ALDRVRQGA +MP  QLH QL K  G DWRS+   FDE P+AAASIGQV  + L
Sbjct:  233 LADALCTMRGAALKLGQMLSIQDESTIPPQLALALDRVRQGAHIMPKAQLHSQLTKAWGDDWRSQFEEFDENPVAAASIGQVHRATL 319
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BLAST of mRNA_Ecto-sp13_S_contig78347.19092.1 vs. uniprot
Match: A0A7S3DXE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DXE7_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.160e-30
Identity = 56/87 (64.37%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:    1 LAETLCRMRGAALKLGQMLSIQDESVIPPSLAKALDRVRQGADVMPSKQLHGQLEKNLGMDWRSKLAAFDETPIAAASIGQVRLSLL 261
            LA +LCRMRGAALK+GQMLSIQDES++PP+L++AL +VRQGA+ MP +QL  QLE  LG DWRSK  +F+E P AAASIGQ   +++
Sbjct:  228 LAASLCRMRGAALKMGQMLSIQDESLLPPALSRALQQVRQGAEAMPKRQLFQQLESQLGSDWRSKFISFEEAPFAAASIGQCHRAVI 314
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BLAST of mRNA_Ecto-sp13_S_contig78347.19092.1 vs. uniprot
Match: A0A8K1CGC3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGC3_PYTOL)

HSP 1 Score: 121 bits (303), Expect = 3.880e-30
Identity = 61/87 (70.11%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:    1 LAETLCRMRGAALKLGQMLSIQDESVIPPSLAKALDRVRQGADVMPSKQLHGQLEKNLGMDWRSKLAAFDETPIAAASIGQVRLSLL 261
            LAETLC MRGAALKLGQMLSIQDE+++PP LA+ALDRVRQ A VMP  QLH QL   LG DWR     FD+ PIAAASIGQV  + L
Sbjct:  265 LAETLCTMRGAALKLGQMLSIQDENLVPPKLAEALDRVRQNAHVMPKDQLHAQLASELGEDWRDNFLEFDDIPIAAASIGQVHRATL 351
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BLAST of mRNA_Ecto-sp13_S_contig78347.19092.1 vs. uniprot
Match: A0A8K0AGK5_ANDGO (Mitochondrial ubiquinone biosynthesis Coq8 n=1 Tax=Andalucia godoyi TaxID=505711 RepID=A0A8K0AGK5_ANDGO)

HSP 1 Score: 119 bits (299), Expect = 1.410e-29
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:    1 LAETLCRMRGAALKLGQMLSIQDESVIPPSLAKALDRVRQGADVMPSKQLHGQLEKNLGMDWRSKLAAFDETPIAAASIGQV 246
            LA TLCRMRGAALKLGQ++SIQD+++IPP + K LDRVRQ AD+MP KQL  QLEK LG  WR K  +FDE PIAAASIGQV
Sbjct:  278 LAATLCRMRGAALKLGQIISIQDDALIPPQIQKVLDRVRQQADIMPKKQLFFQLEKELGSKWREKFESFDEDPIAAASIGQV 359
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78347.19092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPB9_9PHAE1.070e-4293.10ABC1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YMK7_9STRA2.060e-3274.71Protein required for ubiquinone biosynthesis and f... [more]
A0A1V9Z8E2_9STRA3.230e-3273.56ABC1 domain-containing protein n=1 Tax=Achlya hypo... [more]
A0A7S2UK90_9STRA3.930e-3274.39Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A067CE53_SAPPC4.710e-3171.26Atypical/ABC1/ABC1-A protein kinase n=2 Tax=Saprol... [more]
H3GJS1_PHYRM1.970e-3072.41ABC1 domain-containing protein n=6 Tax=Phytophthor... [more]
A0A1V9ZC44_9STRA2.570e-3071.26ABC1 domain-containing protein n=1 Tax=Thraustothe... [more]
A0A7S3DXE7_9STRA3.160e-3064.37Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A8K1CGC3_PYTOL3.880e-3070.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8K0AGK5_ANDGO1.410e-2971.95Mitochondrial ubiquinone biosynthesis Coq8 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78347contigEcto-sp13_S_contig78347:2..623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score144.1
Seed ortholog evalue3e-32
Seed eggNOG ortholog2880.D8LRI9
Preferred nameADCK3
Model size264
KEGG koko:K08869
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001655,GO:0001822,GO:0002064,GO:0003674,GO:0003824,GO:0004672,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006464,GO:0006468,GO:0006725,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006753,GO:0006778,GO:0006787,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009888,GO:0009987,GO:0010224,GO:0015980,GO:0015994,GO:0015996,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0019439,GO:0019538,GO:0019637,GO:0019693,GO:0019866,GO:0019898,GO:0021549,GO:0021575,GO:0021587,GO:0021680,GO:0021692,GO:0021695,GO:0021696,GO:0022037,GO:0022900,GO:0022904,GO:0030154,GO:0030198,GO:0030554,GO:0030855,GO:0030902,GO:0031090,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032194,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032835,GO:0032836,GO:0033013,GO:0033015,GO:0034641,GO:0035850,GO:0036094,GO:0036211,GO:0042180,GO:0042181,GO:0042440,GO:0042773,GO:0042775,GO:0043062,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043531,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045333,GO:0046034,GO:0046149,GO:0046483,GO:0046700,GO:0046777,GO:0048468,GO:0048513,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051186,GO:0051187,GO:0051188,GO:0055086,GO:0055114,GO:0060322,GO:0060429,GO:0061005,GO:0061318,GO:0070013,GO:0071704,GO:0071840,GO:0072001,GO:0072006,GO:0072009,GO:0072010,GO:0072015,GO:0072073,GO:0072112,GO:0072310,GO:0072311,GO:0072521,GO:0097159,GO:0097367,GO:0140096,GO:1901004,GO:1901006,GO:1901135,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901661,GO:1901663
Exons2
EggNOG free text desc.ubiquinone biosynthetic process
EggNOG OGsCOG0661@1,KOG1234@2759
Cds size243
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464054.101443-UTR-Ecto-sp13_S_contig78347:1..221681464054.101443-UTR-Ecto-sp13_S_contig78347:1..22Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig78347 2..22 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464054.114454-CDS-Ecto-sp13_S_contig78347:22..671681464054.114454-CDS-Ecto-sp13_S_contig78347:22..67Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78347 23..67 +
1681464054.1243236-CDS-Ecto-sp13_S_contig78347:425..6231681464054.1243236-CDS-Ecto-sp13_S_contig78347:425..623Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78347 426..623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78347.19092.1prot_Ecto-sp13_S_contig78347.19092.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78347 23..623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78347.19092.1

>prot_Ecto-sp13_S_contig78347.19092.1 ID=prot_Ecto-sp13_S_contig78347.19092.1|Name=mRNA_Ecto-sp13_S_contig78347.19092.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MRGAALKLGQMLSIQDESVIPPSLAKALDRVRQGADVMPSKQLHGQLEKN
LGMDWRSKLAAFDETPIAAASIGQVRLSLL*
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mRNA from alignment at Ecto-sp13_S_contig78347:2..623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78347.19092.1 ID=mRNA_Ecto-sp13_S_contig78347.19092.1|Name=mRNA_Ecto-sp13_S_contig78347.19092.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=622bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78347:2..623+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGCCGAGACCCTCTGCCGCATGCGAGGCGCTGCGCTGAAGCTAGGGCA
GATGCTCTCCATACAGGTGAAGGATGCCGACAAGTGCTAAGCGCACAGAT
TTGGTGCACTACAAACTTTTTCCAACGGTCGCAAGTAGTGCGGGCAACAA
TTCGCTCGTGGTCGGCAGTTCTACGTTGTCATGCGTTTCGAACGACAGGA
TTCGACTGCCGTCAACACACTGCCGTACCACCGCAGACCTCCAATAAAAG
TATCGGATATGGACACCACGGCATAGGTTGACGTTTATGGTAGACACTGT
CGATAGCCATACCAACAGCTTCCTGGTGTGTTTTCTCTCCGGCCAGTGTT
CTTCTTCTTCCTATACTTTCCATCTCCCTGTTCCTCCTGAAACCTTGTGG
TGTGCTTTCTTTTCGGCAACGCAGGACGAGAGTGTCATCCCGCCATCTCT
AGCCAAAGCTCTCGACAGAGTCAGGCAAGGCGCAGACGTGATGCCATCAA
AGCAGCTTCATGGGCAGTTGGAAAAGAACCTCGGCATGGACTGGAGAAGT
AAGCTGGCTGCTTTCGACGAGACTCCCATCGCAGCGGCGAGCATCGGACA
GGTGAGGCTATCCCTGCTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78347:2..623+

>mRNA_Ecto-sp13_S_contig78347.19092.1 ID=mRNA_Ecto-sp13_S_contig78347.19092.1|Name=mRNA_Ecto-sp13_S_contig78347.19092.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78347:2..623+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAGGCGCTGCGCTGAAGCTAGGGCAGATGCTCTCCATACAGGACGA
GAGTGTCATCCCGCCATCTCTAGCCAAAGCTCTCGACAGAGTCAGGCAAG
GCGCAGACGTGATGCCATCAAAGCAGCTTCATGGGCAGTTGGAAAAGAAC
CTCGGCATGGACTGGAGAAGTAAGCTGGCTGCTTTCGACGAGACTCCCAT
CGCAGCGGCGAGCATCGGACAGGTGAGGCTATCCCTGCTGTGA
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