mRNA_Ecto-sp13_S_contig7833.19091.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7833.19091.1
Unique NamemRNA_Ecto-sp13_S_contig7833.19091.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7833.19091.1 vs. uniprot
Match: D7G959_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G959_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 3.040e-45
Identity = 71/83 (85.54%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:    1 MMRAFACLAALVGTKVVSSHPLCFFDDRPTDYDEVLTFCDNSIAAYGACCTDDEEAQVAVDFSAVTPVGEELTGDCSDLYKQV 249
            MMR FACLAALVGTKVVSSHPLCFFDDR  DYD+VLTFCDNSI +YGACCTDDEEA V  +FSAVTP G ELTGDCSDLYKQV
Sbjct:    1 MMRFFACLAALVGTKVVSSHPLCFFDDRQPDYDQVLTFCDNSITSYGACCTDDEEALVMANFSAVTPEGVELTGDCSDLYKQV 83
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BLAST of mRNA_Ecto-sp13_S_contig7833.19091.1 vs. uniprot
Match: D7G961_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.900e-40
Identity = 71/83 (85.54%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    1 MMRAFACLAALVGTKVVSSHPLCFFDDRPTDYDEVLTFCDNSIAAYGACCTDDEEAQVAVDFSAVTPVGEELTGDCSDLYKQV 249
            MMRAFACLAALVG KVV+SHPLCFFDDRPTDY+EVLTFCD SIAAYGACCTDDEE QV  DFS VTP G ELTGDCS+LYK+V
Sbjct:    1 MMRAFACLAALVGIKVVTSHPLCFFDDRPTDYNEVLTFCDTSIAAYGACCTDDEEVQVMKDFSGVTPEGVELTGDCSNLYKEV 83
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BLAST of mRNA_Ecto-sp13_S_contig7833.19091.1 vs. uniprot
Match: D7G957_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 2.010e-39
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:    1 MMRAFACLAALVGTKVVSSHPLCFFDDRPTDYDEVLTFCDNSIAAYGACCTDDEEAQVAVDFSAVTPVGEELTGDCSDLYKQV 249
            MMR+FACLAALV T+V +SHPLCF DD+PTDYD+VLTFCDNSIA+ GACCTDDEEAQV VDF+AVTPVGEELTGDC DLYKQV
Sbjct:    1 MMRSFACLAALVATQV-ASHPLCFIDDKPTDYDQVLTFCDNSIASSGACCTDDEEAQVVVDFNAVTPVGEELTGDCPDLYKQV 82
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BLAST of mRNA_Ecto-sp13_S_contig7833.19091.1 vs. uniprot
Match: A0A6H5K353_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K353_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.010e-29
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    4 MRAFACLAALVGTKVVSSHPLCFFDDRPTDYDEVLTFCDNSIAAYGACCTDDEEAQVAVDFSAVTPVGEELTGDCSDLYKQ 246
            MRA+ACLAAL  TKV ++HPLC+FDDRPTDYD+VLTFCDNSIA  GACCTD+EE QV  +F A    G   + +C+ LYK+
Sbjct:    1 MRAYACLAALAATKV-AAHPLCYFDDRPTDYDQVLTFCDNSIAMSGACCTDEEEGQVEANFDAAFAEGVVPSSECAALYKE 80
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BLAST of mRNA_Ecto-sp13_S_contig7833.19091.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 4.060e-24
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    4 MRAFACLAALVGTKVVSSHPLCFFDDRPTDYDEVLTFCDNSIAAYGACCTDDEEAQVAVDFSAVTPVGEELTGDCSDLYKQV 249
            MRA+ACLAAL  TKV ++HPLCF DD+PTDYD+VLT+CDNSIA  GACCT++EE  V  +F+A   VG   +  C+ LYKQV
Sbjct:    1 MRAYACLAALAATKV-AAHPLCFIDDKPTDYDQVLTYCDNSIAMSGACCTNEEEDIVEANFNAAFGVGVVPSTACAALYKQV 81
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7833.19091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G959_ECTSI3.040e-4585.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G961_ECTSI1.900e-4085.54Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
D7G957_ECTSI2.010e-3984.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K353_9PHAE1.010e-2964.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4P3_ECTSI4.060e-2462.20Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7833contigEcto-sp13_S_contig7833:5612..6067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score151.8
Seed ortholog evalue1.6e-34
Seed eggNOG ortholog2880.D7G961
Model size267
KEGG koko:K21430
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0031224,GO:0031225,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0046658,GO:0071944
Exons2
EggNOG free text desc.scavenger receptor activity
EggNOG OGs2QQKP@2759,COG2133@1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003090.1
Cds size267
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464054.0494218-CDS-Ecto-sp13_S_contig7833:5611..57761681464054.0494218-CDS-Ecto-sp13_S_contig7833:5611..5776Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7833 5612..5776 -
1681464054.065762-CDS-Ecto-sp13_S_contig7833:5965..60671681464054.065762-CDS-Ecto-sp13_S_contig7833:5965..6067Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7833 5966..6067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7833.19091.1prot_Ecto-sp13_S_contig7833.19091.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7833 5612..6067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7833.19091.1

>prot_Ecto-sp13_S_contig7833.19091.1 ID=prot_Ecto-sp13_S_contig7833.19091.1|Name=mRNA_Ecto-sp13_S_contig7833.19091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MMRAFACLAALVGTKVVSSHPLCFFDDRPTDYDEVLTFCDNSIAAYGACC
TDDEEAQVAVDFSAVTPVGEELTGDCSDLYKQVRVHKI*
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mRNA from alignment at Ecto-sp13_S_contig7833:5612..6067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7833.19091.1 ID=mRNA_Ecto-sp13_S_contig7833.19091.1|Name=mRNA_Ecto-sp13_S_contig7833.19091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7833:5612..6067- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCGTGCCTTCGCGTGTCTAGCCGCGCTGGTCGGCACGAAGGTGGT
GTCGTCGCACCCTCTCTGCTTTTTCGACGACAGACCGACGGATTATGACG
AGGTAATAACTCAGTGTTTGCTTATGTAATTACGATATACTTCAATCTTC
GACACAACAAGAATCTGTAAGAGAGTACAGAGTTCCCGGTCGAGATTACC
ACGACTGTACCCTCACACGCTGCCTGCATATCCGGTGTCAACTGCAACAA
GAGCTCATGTACCACCAAACTTTTTTCCGTTGGCACAACAGGTCTTGACC
TTCTGCGACAACTCGATCGCGGCGTACGGCGCTTGCTGCACGGACGATGA
GGAAGCCCAAGTGGCGGTCGACTTCAGCGCTGTGACGCCTGTAGGAGAGG
AACTCACCGGGGATTGCTCTGATCTCTACAAGCAGGTGCGGGTTCACAAA
ATCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7833:5612..6067-

>mRNA_Ecto-sp13_S_contig7833.19091.1 ID=mRNA_Ecto-sp13_S_contig7833.19091.1|Name=mRNA_Ecto-sp13_S_contig7833.19091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7833:5612..6067- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCGTGCCTTCGCGTGTCTAGCCGCGCTGGTCGGCACGAAGGTGGT
GTCGTCGCACCCTCTCTGCTTTTTCGACGACAGACCGACGGATTATGACG
AGGTCTTGACCTTCTGCGACAACTCGATCGCGGCGTACGGCGCTTGCTGC
ACGGACGATGAGGAAGCCCAAGTGGCGGTCGACTTCAGCGCTGTGACGCC
TGTAGGAGAGGAACTCACCGGGGATTGCTCTGATCTCTACAAGCAGGTGC
GGGTTCACAAAATCTAA
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