mRNA_Ecto-sp13_S_contig12272.1909.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12272.1909.1
Unique NamemRNA_Ecto-sp13_S_contig12272.1909.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12272.1909.1 vs. uniprot
Match: A0A6H5JLY2_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY2_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.310e-45
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 1 
Query:    1 LDPSSSPTRAGSGRGRGDAAGGSRSPNRKRNYSQLATFGDENGAPSPFPSDGGSKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPQMN 282
            LDPSSSP+RAGSGR R +AA GSRSP RKRNYSQLATFGDENGAPSPFPSDGGSKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDP +N
Sbjct:  197 LDPSSSPSRAGSGRRRREAASGSRSPKRKRNYSQLATFGDENGAPSPFPSDGGSKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPHIN 290
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BLAST of mRNA_Ecto-sp13_S_contig12272.1909.1 vs. uniprot
Match: D8LCS2_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS2_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 4.630e-38
Identity = 77/94 (81.91%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:    1 LDPSSSPTRAGSGRGRGDAAGGSRSPNRKRNYSQLATFGDENGAPSPFPSDGGSKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPQMN 282
            LDPSSSP RAG              P RKRNYSQLATFGDENGAPSPFPSDGG KNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPQMN
Sbjct:  167 LDPSSSPARAGXXXXXXXXXXXXXXPKRKRNYSQLATFGDENGAPSPFPSDGGPKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPQMN 260
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12272.1909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLY2_9PHAE1.310e-4591.49MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LCS2_ECTSI4.630e-3881.91Myb-like DNA-binding domain containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12272contigEcto-sp13_S_contig12272:2193..3939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score149.1
Seed ortholog evalue1.1e-33
Seed eggNOG ortholog2880.D8LCS2
Model size282
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
Cds size282
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462652.7808301-CDS-Ecto-sp13_S_contig12272:2192..22721681462652.7808301-CDS-Ecto-sp13_S_contig12272:2192..2272Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12272 2193..2272 +
1681462652.79143-CDS-Ecto-sp13_S_contig12272:3035..31831681462652.79143-CDS-Ecto-sp13_S_contig12272:3035..3183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12272 3036..3183 +
1681462652.8007376-CDS-Ecto-sp13_S_contig12272:3885..39391681462652.8007376-CDS-Ecto-sp13_S_contig12272:3885..3939Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12272 3886..3939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12272.1909.1prot_Ecto-sp13_S_contig12272.1909.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12272 2193..3939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12272.1909.1

>prot_Ecto-sp13_S_contig12272.1909.1 ID=prot_Ecto-sp13_S_contig12272.1909.1|Name=mRNA_Ecto-sp13_S_contig12272.1909.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
LDPSSSPTRAGSGRGRGDAAGGSRSPNRKRNYSQLATFGDENGAPSPFPS
DGGSKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPQMN
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mRNA from alignment at Ecto-sp13_S_contig12272:2193..3939+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12272.1909.1 ID=mRNA_Ecto-sp13_S_contig12272.1909.1|Name=mRNA_Ecto-sp13_S_contig12272.1909.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12272:2193..3939+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGACCCGTCATCGTCCCCGACAAGAGCGGGCTCCGGCAGGGGGCGGGG
AGACGCGGCGGGCGGGTCCAGGTCTCCTAAGTAAGTCGGCTTGTTTGTTG
AGTGGGGGTGGGGGCGGATAGGTTGTTGTTTTCTTCCTCTCATTCCACCT
CGTTTTTTCTGTCCGCTTGGCTTCGTTCGTCGTTCACGAGCCGGCGCAAT
TGGATTGACCAACGGGATGTGTTAGATACTAGCCTGTCGACGGAAAGTGT
TGCGGTCTGTTGTGGATAGAGATGCATGTATGATATGTGGTTTTGTCTTT
TTGATGGTTCGGCCGGTTGTGAGGTGAATGGTAGTTGCTGAGGAGCACAC
CCCGAAAAAGGTCAGCCGTCTTCGCATATTTGTCCCGCTGCATGTAGTGC
ATGACTGACGTATTTTCGTTGCTCAGCGTGTCGCATAGAGCGGGCCACTC
CAATTTAATAAGCACACACACACCACACGAGCTCGAGTCCAACGAATGCA
TAACAATCTTCGTAGACGTGTGCAGTTTTCTTTTTTTGATACCGATTTCT
TTGATCCGGAGAATAGATTGGTCTCCCCCATGCCGCCCGCTGACGCGGTC
CCAGTTAATGACATTTAAAAGTGTTTTGTGTAACCGCACCGAGACTGGCG
GCTTTTCATTGGGCAGCCGGTTAGCGCGGTCGATGCTATTATGTAATTAA
AAGAAACACGCGCACATGACCTTTATGAGCATTTTGTTGTTTCACTGCAC
TGAGATTGACGTCTTTTAATTGGTCGGCCGCTTTGCGTTGTCGATGCTAA
CATAAAACACACACGCTCACACACGCGCGCACACACAAAGCAGCAGGAAG
CGCAACTACTCGCAGCTGGCGACTTTCGGAGACGAGAACGGAGCCCCCTC
CCCATTCCCCAGCGACGGCGGTTCCAAGAACGCTTCCAGAGTGTTGTCGA
ACTCTAGACTCACCGTGCACAAGGACGGGGCGTACATGCAGGTCCGTTGT
GCCTGCCGGATGCCGTGCGGCCGAAAGCTGTTGTCGTTGCCGTGAGATTT
CCTTGTGGGACGTATTAATTTGGCGGGACTGATGGTGGTGCTAGTGCTGC
TGTTCGTGCTGCTGCTGCTGTCCATTTGGCACGGCATGCCCACGATGTCG
AGCTGTAGGGGGTGTTGCTGGTTTTGGTGAGCTTGATCTTACTGTACCCT
TGGCATGAACGGGCTCCGGTAACGAGAGGGGGACGAGGAGACAGGGCGGG
TCCGGCTCTTAGCTTTGCCATGTTTTTGTGGCCACGACTGATGCAGTTCA
TGGGAAGTTCTTGTTGACTTGGGTATTGAATCTGGGGGGCTTCATCCGTC
ATCTCTCACTAGCCATGTCAATATACTTGACCGTCTTGAGGCTTGCGTTT
CAGCTCGCTGTCTTGCTTCCACTCATGGCCCCCGTATTCACCAATTCATG
ACTGCTCTTGTTTTTGCGGAATCGAAGTCGTAAGGCTGTATACCATGCAT
AACATCGTTCCCTTTTCCACCTGCATTAGAGCACGGCGGGACTTGCTACT
TGTGGCTTTTTCCCCCGCCCTTCCGGGCCAAGCTCGTTACCGTTGTCGTC
TCCTCCACCAGCATTACAGCAGGTGGGACTTGCTACATACTCGTGTCTTG
ACCCCCGCCGAAATTTCTTGCCCCCACGACCTGGCTCGCTCAGGTGACGT
TCGACGACACCCACCGCTTCGCTATGGAGGAGGACCCTCAGATGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12272:2193..3939+

>mRNA_Ecto-sp13_S_contig12272.1909.1 ID=mRNA_Ecto-sp13_S_contig12272.1909.1|Name=mRNA_Ecto-sp13_S_contig12272.1909.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12272:2193..3939+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGACCCGTCATCGTCCCCGACAAGAGCGGGCTCCGGCAGGGGGCGGGG
AGACGCGGCGGGCGGGTCCAGGTCTCCTAACAGGAAGCGCAACTACTCGC
AGCTGGCGACTTTCGGAGACGAGAACGGAGCCCCCTCCCCATTCCCCAGC
GACGGCGGTTCCAAGAACGCTTCCAGAGTGTTGTCGAACTCTAGACTCAC
CGTGCACAAGGACGGGGCGTACATGCAGGTGACGTTCGACGACACCCACC
GCTTCGCTATGGAGGAGGACCCTCAGATGAAC
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