mRNA_Ecto-sp13_S_contig78302.19088.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78302.19088.1
Unique NamemRNA_Ecto-sp13_S_contig78302.19088.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig78302.19088.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.210e-17
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 GKYIEAEPLYERSQAIREKVLGPEHPDVATTLNNRALLFGRQVRTERCFQK 153
            GKY EAEPLYERSQAI+E VLGPEHPDV T+LNNRALL  +QVR +RCF K
Sbjct:  661 GKYAEAEPLYERSQAIQENVLGPEHPDVGTSLNNRALLLEKQVRHKRCFYK 711
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BLAST of mRNA_Ecto-sp13_S_contig78302.19088.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.770e-15
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 GKYIEAEPLYERSQAIREKVLGPEHPDVATTLNNRALLFGRQVRTERCFQKTID 162
            GKY +AEPL ERSQ IREKVLGPEHPDVA +LNNRA L   QVR +RCFQ  ++
Sbjct:  499 GKYDDAEPLNERSQTIREKVLGPEHPDVAQSLNNRAGLLEAQVRAKRCFQMLLE 552
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BLAST of mRNA_Ecto-sp13_S_contig78302.19088.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 8.870e-14
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 GKYIEAEPLYERSQAIREKVLGPEHPDVATTLNNRALLFGRQV 129
            GKY+EAEPLYERSQAI+EKVLG EHPDVA++LNNR  L   QV
Sbjct:   19 GKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQV 61
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BLAST of mRNA_Ecto-sp13_S_contig78302.19088.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 4.390e-12
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 GKYIEAEPLYERSQAIREKVLGPEHPDVATTLNNRALLFGR 123
            GKY EAEPLYERS AI+EKVLGPEHPDVAT+L+NRA L  R
Sbjct:  694 GKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLLER 734
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BLAST of mRNA_Ecto-sp13_S_contig78302.19088.1 vs. uniprot
Match: A0A6H5L226_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L226_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 5.930e-12
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 GKYIEAEPLYERSQAIREKVLGPEHPDVATTLNNRALLF 117
            GK+ EAEPLYERSQAIREKVLGP+HPDVA  LNNRA L 
Sbjct:  367 GKHAEAEPLYERSQAIREKVLGPKHPDVAEVLNNRATLL 405
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BLAST of mRNA_Ecto-sp13_S_contig78302.19088.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.120e-11
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 GKYIEAEPLYERSQAIREKVLGPEHPDVATTLNNRALLF 117
            G Y EA+PLYERSQAIR+KVLGP+HPDVAT LNNRA L 
Sbjct:  206 GNYAEAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGLL 244
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BLAST of mRNA_Ecto-sp13_S_contig78302.19088.1 vs. uniprot
Match: A0A6H5KMK1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.230e-11
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 GKYIEAEPLYERSQAIREKVLGPEHPDVATTLNNRALLFGRQ 126
            GKY EAEPLYERSQAIREKVLG EHP VAT+LN+RA L  +Q
Sbjct:   15 GKYTEAEPLYERSQAIREKVLGSEHPRVATSLNDRAKLLCKQ 56
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BLAST of mRNA_Ecto-sp13_S_contig78302.19088.1 vs. uniprot
Match: A0A6H5K8Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.430e-11
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 GKYIEAEPLYERSQAIREKVLGPEHPDVATTLNNRALL 114
            GKY +AE LYERS AIREKVLGPEHPDVA +LNNR LL
Sbjct:   17 GKYDDAEQLYERSLAIREKVLGPEHPDVAQSLNNRELL 54
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BLAST of mRNA_Ecto-sp13_S_contig78302.19088.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.520e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 GKYIEAEPLYERSQAIREKVLGPEHPDVATTLNNRA 108
            GK+ EAEPLY RSQAI+EKVLGPEHPDVAT+LNNRA
Sbjct:  435 GKFTEAEPLYGRSQAIQEKVLGPEHPDVATSLNNRA 470
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BLAST of mRNA_Ecto-sp13_S_contig78302.19088.1 vs. uniprot
Match: A0A6H5KB97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB97_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.060e-11
Identity = 35/48 (72.92%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 GKYIEAEPLYERSQAIREKVLGPEHPDVATTLNNRALLFGRQVRTERC 144
            GKY EAEPLYERSQAIRE VLGPEH DV  +LNN A L  RQV  +RC
Sbjct:  345 GKYAEAEPLYERSQAIRENVLGPEHSDVGRSLNNLAALKMRQV-VDRC 391
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78302.19088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXS7_9PHAE1.210e-1778.43NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KIY6_9PHAE1.770e-1570.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3K8_9PHAE8.870e-1476.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G722_ECTSI4.390e-1280.49NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5L226_9PHAE5.930e-1282.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5H9_9PHAE1.120e-1179.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK1_9PHAE1.230e-1178.57Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K8Z8_9PHAE1.430e-1181.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LJA6_9PHAE1.520e-1186.11NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KB97_9PHAE2.060e-1172.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78302contigEcto-sp13_S_contig78302:67..240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score69.3
Seed ortholog evalue6.6e-10
Seed eggNOG ortholog2880.D7G722
Model size174
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Cds size174
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464053.7900705-CDS-Ecto-sp13_S_contig78302:66..2401681464053.7900705-CDS-Ecto-sp13_S_contig78302:66..240Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78302 67..240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78302.19088.1prot_Ecto-sp13_S_contig78302.19088.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78302 67..240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78302.19088.1

>prot_Ecto-sp13_S_contig78302.19088.1 ID=prot_Ecto-sp13_S_contig78302.19088.1|Name=mRNA_Ecto-sp13_S_contig78302.19088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
GKYIEAEPLYERSQAIREKVLGPEHPDVATTLNNRALLFGRQVRTERCFQ
KTIDHLQR
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mRNA from alignment at Ecto-sp13_S_contig78302:67..240+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78302.19088.1 ID=mRNA_Ecto-sp13_S_contig78302.19088.1|Name=mRNA_Ecto-sp13_S_contig78302.19088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78302:67..240+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAAGTACATCGAGGCCGAGCCACTGTACGAGCGGTCACAGGCCATACG
AGAGAAGGTGTTAGGTCCGGAGCATCCTGATGTGGCCACAACGCTCAACA
ACCGAGCGTTGTTGTTTGGGAGACAGGTGAGAACCGAACGATGCTTCCAG
AAGACAATAGACCACTTGCAACGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78302:67..240+

>mRNA_Ecto-sp13_S_contig78302.19088.1 ID=mRNA_Ecto-sp13_S_contig78302.19088.1|Name=mRNA_Ecto-sp13_S_contig78302.19088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78302:67..240+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAAGTACATCGAGGCCGAGCCACTGTACGAGCGGTCACAGGCCATACG
AGAGAAGGTGTTAGGTCCGGAGCATCCTGATGTGGCCACAACGCTCAACA
ACCGAGCGTTGTTGTTTGGGAGACAGGTGAGAACCGAACGATGCTTCCAG
AAGACAATAGACCACTTGCAACGC
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