mRNA_Ecto-sp13_S_contig7830.19087.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7830.19087.1
Unique NamemRNA_Ecto-sp13_S_contig7830.19087.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7830.19087.1 vs. uniprot
Match: A0A6H5L721_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L721_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.060e-42
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 IHFLSTYNRNQMKDVFLGKGMWVVLCSGEGAGYDAVYKRFGTASKAMTGSAKFGVVDCAGSLPSGKSILQKFDL 222
            IHFLSTYNRNQMKDVFLGKGMWVVLCSGEGAGYDAVYKRFGTASKAMTGSAKFGVVDCAGSLPSGKSILQKFDL
Sbjct:   47 IHFLSTYNRNQMKDVFLGKGMWVVLCSGEGAGYDAVYKRFGTASKAMTGSAKFGVVDCAGSLPSGKSILQKFDL 120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7830.19087.1 vs. uniprot
Match: D8LFH7_ECTSI (NIMA-like PK similar to Serine/threonine-protein kinase Nek1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH7_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.740e-13
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   64 WVVLCSGEGAGYDAVYKRFGTASKAMTGSAKFGVVDCAGSLPSGKSILQKFDL 222
            WVVLC  +G  Y++ Y RF TAS+ +T S KFGVVDC GSLPSGKSI+QKF L
Sbjct:  363 WVVLCKKKGPDYNSAYGRFETASRTLTESVKFGVVDCFGSLPSGKSIIQKFGL 415
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7830.19087.1 vs. uniprot
Match: A0A835ZG14_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG14_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.370e-10
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:    1 IHFLSTYNRNQMKDVFLGKGMWVVLCSGEGAGYDAVYKRFGTASKAMTGSAKFGVVDCAGSLPSGKSILQKFDL 222
            +H+LS  N +QM+ VFLG   WVVLC    A   A++    TA    +    FGV+DC G+LPSGK++L+KF +
Sbjct:   35 LHYLSARNVDQMRAVFLGNETWVVLCHAGAAAVPALFDA--TARAPPSPGVAFGVLDCGGTLPSGKTVLEKFGI 106
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7830.19087.1 vs. uniprot
Match: A0A7S0YW31_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YW31_9CRYP)

HSP 1 Score: 49.7 bits (117), Expect = 3.690e-5
Identity = 25/65 (38.46%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:   22 NRNQMKDVFLGKGMWVVLCSGEGAGYDAVYKRFGTASKAMTGSAKFGVVDCAGSLPSGKSILQKF 216
            N  Q+K VF G   W++ C  E       ++R    S  + G  K+GV+DCAG LPS K+  Q+F
Sbjct:   88 NPEQLKKVFFGGEPWLLHCMNENTTMSPFFERAAKKSS-VDGVVKYGVIDCAGKLPSNKTFFQRF 151
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7830.19087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L721_9PHAE1.060e-42100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LFH7_ECTSI2.740e-1366.04NIMA-like PK similar to Serine/threonine-protein k... [more]
A0A835ZG14_9STRA1.370e-1044.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0YW31_9CRYP3.690e-538.46Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7830contigEcto-sp13_S_contig7830:98..319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score74.7
Seed ortholog evalue2e-11
Seed eggNOG ortholog2880.D8LFH7
Model size222
KEGG koko:K08857
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0589@1,KOG0589@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002520.1
EC2.7.11.1
Cds size222
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464053.7585497-CDS-Ecto-sp13_S_contig7830:97..3191681464053.7585497-CDS-Ecto-sp13_S_contig7830:97..319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7830 98..319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7830.19087.1prot_Ecto-sp13_S_contig7830.19087.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7830 98..319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7830.19087.1

>prot_Ecto-sp13_S_contig7830.19087.1 ID=prot_Ecto-sp13_S_contig7830.19087.1|Name=mRNA_Ecto-sp13_S_contig7830.19087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
IHFLSTYNRNQMKDVFLGKGMWVVLCSGEGAGYDAVYKRFGTASKAMTGS
AKFGVVDCAGSLPSGKSILQKFDL
back to top

mRNA from alignment at Ecto-sp13_S_contig7830:98..319-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7830.19087.1 ID=mRNA_Ecto-sp13_S_contig7830.19087.1|Name=mRNA_Ecto-sp13_S_contig7830.19087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7830:98..319- (Ectocarpus species13 EcNAP12_S_4_19m)
ATACACTTTCTGTCGACCTACAACCGCAACCAGATGAAGGACGTCTTCCT
AGGCAAAGGGATGTGGGTGGTGCTCTGCAGCGGGGAGGGCGCGGGGTACG
ACGCCGTGTACAAGAGGTTCGGCACGGCCTCCAAGGCCATGACGGGCTCG
GCCAAGTTCGGTGTCGTTGACTGCGCGGGCTCGCTGCCCTCCGGCAAGAG
CATCCTCCAGAAGTTCGACCTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7830:98..319-

>mRNA_Ecto-sp13_S_contig7830.19087.1 ID=mRNA_Ecto-sp13_S_contig7830.19087.1|Name=mRNA_Ecto-sp13_S_contig7830.19087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7830:98..319- (Ectocarpus species13 EcNAP12_S_4_19m)
ATACACTTTCTGTCGACCTACAACCGCAACCAGATGAAGGACGTCTTCCT
AGGCAAAGGGATGTGGGTGGTGCTCTGCAGCGGGGAGGGCGCGGGGTACG
ACGCCGTGTACAAGAGGTTCGGCACGGCCTCCAAGGCCATGACGGGCTCG
GCCAAGTTCGGTGTCGTTGACTGCGCGGGCTCGCTGCCCTCCGGCAAGAG
CATCCTCCAGAAGTTCGACCTT
back to top