mRNA_Ecto-sp13_S_contig7828.19083.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7828.19083.1
Unique NamemRNA_Ecto-sp13_S_contig7828.19083.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7828.19083.1 vs. uniprot
Match: D8LES6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LES6_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 4.570e-47
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    1 STPTGTLAAERGTWKLQPWRLWPVHQPAAAALVEPCVSSVVAVPELALLRKALAALADRTDKALRMMEGGTSSSASESCGVKRGRGGATAGVGGD 285
            S PTGTLAAERGTWKLQPWRLWPVHQPAAAALVEPCVSSVVAVPELALLRKALAALADRTDKALRMMEGGTSS ASESCGVKRGRGGAT GVGGD
Sbjct: 1538 SAPTGTLAAERGTWKLQPWRLWPVHQPAAAALVEPCVSSVVAVPELALLRKALAALADRTDKALRMMEGGTSS-ASESCGVKRGRGGATVGVGGD 1631
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7828.19083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LES6_ECTSI4.570e-4796.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7828contigEcto-sp13_S_contig7828:2000..2286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score169.9
Seed ortholog evalue5.9e-40
Seed eggNOG ortholog2880.D8LES6
Model size288
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.histone lysine demethylation
EggNOG OGsCOG0055@1,KOG1246@2759
Cds size285
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464053.4499805-CDS-Ecto-sp13_S_contig7828:1999..22841681464053.4499805-CDS-Ecto-sp13_S_contig7828:1999..2284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7828 2000..2284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7828.19083.1prot_Ecto-sp13_S_contig7828.19083.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7828 2000..2284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7828.19083.1

>prot_Ecto-sp13_S_contig7828.19083.1 ID=prot_Ecto-sp13_S_contig7828.19083.1|Name=mRNA_Ecto-sp13_S_contig7828.19083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
STPTGTLAAERGTWKLQPWRLWPVHQPAAAALVEPCVSSVVAVPELALLR
KALAALADRTDKALRMMEGGTSSSASESCGVKRGRGGATAGVGGD
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mRNA from alignment at Ecto-sp13_S_contig7828:2000..2286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7828.19083.1 ID=mRNA_Ecto-sp13_S_contig7828.19083.1|Name=mRNA_Ecto-sp13_S_contig7828.19083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=287bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7828:2000..2286+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGACCCCGACGGGTACGCTGGCGGCGGAGCGCGGCACGTGGAAGCTGCA
GCCGTGGAGGCTGTGGCCCGTGCACCAGCCCGCCGCGGCGGCGCTCGTGG
AGCCCTGCGTCAGCTCCGTGGTGGCGGTGCCGGAGCTGGCGCTCCTGAGA
AAGGCGCTCGCCGCGCTGGCGGACAGGACCGACAAGGCGCTGAGGATGAT
GGAAGGCGGGACGTCGTCGTCCGCGTCTGAGTCTTGCGGGGTTAAGAGAG
GGCGCGGCGGAGCCACAGCTGGTGTGGGCGGGGACTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7828:2000..2286+

>mRNA_Ecto-sp13_S_contig7828.19083.1 ID=mRNA_Ecto-sp13_S_contig7828.19083.1|Name=mRNA_Ecto-sp13_S_contig7828.19083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7828:2000..2286+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGACCCCGACGGGTACGCTGGCGGCGGAGCGCGGCACGTGGAAGCTGCA
GCCGTGGAGGCTGTGGCCCGTGCACCAGCCCGCCGCGGCGGCGCTCGTGG
AGCCCTGCGTCAGCTCCGTGGTGGCGGTGCCGGAGCTGGCGCTCCTGAGA
AAGGCGCTCGCCGCGCTGGCGGACAGGACCGACAAGGCGCTGAGGATGAT
GGAAGGCGGGACGTCGTCGTCCGCGTCTGAGTCTTGCGGGGTTAAGAGAG
GGCGCGGCGGAGCCACAGCTGGTGTGGGCGGGGAC
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