mRNA_Ecto-sp13_S_contig7828.19082.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7828.19082.1
Unique NamemRNA_Ecto-sp13_S_contig7828.19082.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7828.19082.1 vs. uniprot
Match: D8LES6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LES6_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 5.070e-43
Identity = 116/141 (82.27%), Postives = 117/141 (82.98%), Query Frame = 1 
Query:    1 GRPVDTTERLCVAIIAACRLRLQVRSLLGLGEDEHTTAARAMCLTIQEAGRTASPVELASRSVRRHPENGPGGAGDGSADSKTSGGGSTGGPRGCSPCRGQXXXXXXXXXXXXXXXXXXXASEAPTTTSSRPGSSRTRTRT 423
            GRPVDTTERLCVAIIAACRLRLQVRSLLGLGEDEHTTAARAMCLTIQEAGRTASPVELASRSVRRHPENG GGAGDGS +SKTSG                XXXXXXXXXXXXXXXXXXX     T TSSRPGSSRTRTRT
Sbjct: 1395 GRPVDTTERLCVAIIAACRLRLQVRSLLGLGEDEHTTAARAMCLTIQEAGRTASPVELASRSVRRHPENGTGGAGDGSGESKTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATSSRPGSSRTRTRT 1535
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7828.19082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LES6_ECTSI5.070e-4382.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7828contigEcto-sp13_S_contig7828:1027..1994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score164.1
Seed ortholog evalue4.8e-38
Seed eggNOG ortholog2880.D8LES6
Model size425
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.histone lysine demethylation
EggNOG OGsCOG0055@1,KOG1246@2759
Cds size423
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464053.4038165-CDS-Ecto-sp13_S_contig7828:1026..11281681464053.4038165-CDS-Ecto-sp13_S_contig7828:1026..1128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7828 1027..1128 +
1681464053.4143445-CDS-Ecto-sp13_S_contig7828:1672..19931681464053.4143445-CDS-Ecto-sp13_S_contig7828:1672..1993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7828 1673..1993 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7828.19082.1prot_Ecto-sp13_S_contig7828.19082.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7828 1027..1993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7828.19082.1

>prot_Ecto-sp13_S_contig7828.19082.1 ID=prot_Ecto-sp13_S_contig7828.19082.1|Name=mRNA_Ecto-sp13_S_contig7828.19082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
GRPVDTTERLCVAIIAACRLRLQVRSLLGLGEDEHTTAARAMCLTIQEAG
RTASPVELASRSVRRHPENGPGGAGDGSADSKTSGGGSTGGPRGCSPCRG
QGGGLNGSSAAPCSGGDSGAASEAPTTTSSRPGSSRTRTRT
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mRNA from alignment at Ecto-sp13_S_contig7828:1027..1994+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7828.19082.1 ID=mRNA_Ecto-sp13_S_contig7828.19082.1|Name=mRNA_Ecto-sp13_S_contig7828.19082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=968bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7828:1027..1994+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGGCCCGTGGACACGACGGAGAGGCTCTGCGTCGCGATCATCGCCGC
CTGCCGCCTGCGCCTGCAGGTTCGGTCGCTCCTCGGGCTGGGCGAAGACG
AGGTGCGTTGCGTGCTGTGTTGGCAGGATCTCTTCGTTCCTTGTGTTGTT
GTGCGGTGAGGCGTGGTGCGGCACGACGTGCCGGGGTTGGCGGCCTGTGT
GTTTGCGCGTTGTTCGTTGCGCTTGCCAACGTTTACCACTCTTTTTCATT
TCGTGCTTTTTTTTTATTTTCCTAATATGACCCAACGAATCCATCTCTTA
TTTATAGAAAAGAATATAGGCTATAAGCTAGACTAGCGATGAATCCATAG
CGTCAGCGTTGGCTACCTGTATTTCCACGATTTCTCGAGCAGCACATAGC
GATGTCTCCCTGTTGTGGTTGTTGTTGTTGTCTTCATTCACATGGGCTTT
TTCGTGGCCGCCTCGCCGCCGCGAGTTGCCTTTCCCCGCCGTATTGGACC
TGACTTAGCTCTTAAGCTCACCTCTGGTGCCTCCTGGTTGATGCCGGCCT
GACACCCTCGTGGTTCGACCATCCACGACCTATTAACATGCTTCTGACGC
GCCCCCCGTCCTCTTTTGCCTCGGAATACTCCCTCGCGCCCCGCAGCACA
CCACGGCTGCGAGGGCGATGTGCCTGACCATCCAGGAAGCCGGGCGGACC
GCCTCTCCCGTGGAACTCGCGTCGAGATCCGTCAGGCGGCACCCCGAGAA
CGGGCCGGGCGGCGCGGGCGACGGCTCCGCCGACTCGAAAACCTCCGGCG
GCGGGTCTACCGGGGGCCCGAGGGGATGCTCCCCGTGCCGCGGACAGGGG
GGGGGGTTGAACGGCTCCTCCGCGGCCCCTTGCTCGGGCGGCGACTCCGG
CGCGGCCTCTGAGGCCCCGACGACAACGTCCTCGCGGCCGGGGTCGTCCC
GCACCCGCACGCGCACCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7828:1027..1994+

>mRNA_Ecto-sp13_S_contig7828.19082.1 ID=mRNA_Ecto-sp13_S_contig7828.19082.1|Name=mRNA_Ecto-sp13_S_contig7828.19082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7828:1027..1994+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGGCCCGTGGACACGACGGAGAGGCTCTGCGTCGCGATCATCGCCGC
CTGCCGCCTGCGCCTGCAGGTTCGGTCGCTCCTCGGGCTGGGCGAAGACG
AGCACACCACGGCTGCGAGGGCGATGTGCCTGACCATCCAGGAAGCCGGG
CGGACCGCCTCTCCCGTGGAACTCGCGTCGAGATCCGTCAGGCGGCACCC
CGAGAACGGGCCGGGCGGCGCGGGCGACGGCTCCGCCGACTCGAAAACCT
CCGGCGGCGGGTCTACCGGGGGCCCGAGGGGATGCTCCCCGTGCCGCGGA
CAGGGGGGGGGGTTGAACGGCTCCTCCGCGGCCCCTTGCTCGGGCGGCGA
CTCCGGCGCGGCCTCTGAGGCCCCGACGACAACGTCCTCGCGGCCGGGGT
CGTCCCGCACCCGCACGCGCACC
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