mRNA_Ecto-sp13_S_contig7828.19081.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7828.19081.1
Unique NamemRNA_Ecto-sp13_S_contig7828.19081.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7828.19081.1 vs. uniprot
Match: D8LES6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LES6_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 4.130e-74
Identity = 167/220 (75.91%), Postives = 169/220 (76.82%), Query Frame = 1 
Query:    1 LCACPASEYTFYQRKDEAQLRRAAKDLTSSEEYTETWVEEARLALAAARSTGGGMVNSFRSVKGAKGSGGSCREDEASQLPRENGTGXXXXXXXXXXXXXXXXXXXXXXXSVRPRLANGADCSPSSDGATECEEETQDLQLSNSSGSIMSVDEDEAPLPSSLLPAGWNERPSLSYIGDLIRVGEELNAPEQTLESLREIVDACAGWVKTIEGILGPDGAA 660
            LCACPASEYTFYQRKDEAQLRR+AKDLTSSEEYTETWVEEARLALAAA+STGGGMVN FR VKGAKGSGGS RED ASQLPRENGTGXXXXXXXXXXXXXXXXXXXXXXX                                             APLPSSLLPAGWNERPSLSYIGDLIRVGEEL APEQTLESLREIVDACAGWVKTIEGILGPDG A
Sbjct: 1086 LCACPASEYTFYQRKDEAQLRRSAKDLTSSEEYTETWVEEARLALAAAKSTGGGMVNGFRPVKGAKGSGGSSREDGASQLPRENGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLPSSLLPAGWNERPSLSYIGDLIRVGEELGAPEQTLESLREIVDACAGWVKTIEGILGPDGTA 1305
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7828.19081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LES6_ECTSI4.130e-7475.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7828contigEcto-sp13_S_contig7828:115..774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score258.1
Seed ortholog evalue3.8e-66
Seed eggNOG ortholog2880.D8LES6
Model size662
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.histone lysine demethylation
EggNOG OGsCOG0055@1,KOG1246@2759
Cds size660
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464053.3736668-CDS-Ecto-sp13_S_contig7828:114..7741681464053.3736668-CDS-Ecto-sp13_S_contig7828:114..774Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7828 115..774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7828.19081.1prot_Ecto-sp13_S_contig7828.19081.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7828 115..774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7828.19081.1

>prot_Ecto-sp13_S_contig7828.19081.1 ID=prot_Ecto-sp13_S_contig7828.19081.1|Name=mRNA_Ecto-sp13_S_contig7828.19081.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=220bp
LCACPASEYTFYQRKDEAQLRRAAKDLTSSEEYTETWVEEARLALAAARS
TGGGMVNSFRSVKGAKGSGGSCREDEASQLPRENGTGGGGGGGGKVKLEA
QPSSAKADSDSVRPRLANGADCSPSSDGATECEEETQDLQLSNSSGSIMS
VDEDEAPLPSSLLPAGWNERPSLSYIGDLIRVGEELNAPEQTLESLREIV
DACAGWVKTIEGILGPDGAA
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mRNA from alignment at Ecto-sp13_S_contig7828:115..774+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7828.19081.1 ID=mRNA_Ecto-sp13_S_contig7828.19081.1|Name=mRNA_Ecto-sp13_S_contig7828.19081.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7828:115..774+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTGCGCGTGCCCGGCTTCGGAGTACACGTTCTACCAGCGCAAGGACGA
GGCGCAGCTCCGGAGGGCGGCCAAGGACCTTACTTCCAGCGAGGAGTATA
CGGAGACGTGGGTGGAGGAGGCTAGGTTAGCGCTGGCGGCGGCGAGGAGC
ACCGGCGGCGGGATGGTTAACAGCTTCCGCTCGGTGAAGGGTGCTAAGGG
CAGCGGAGGTAGTTGTCGTGAAGACGAAGCTTCCCAGTTGCCGAGAGAGA
ACGGAACCGGCGGCGGCGGCGGTGGCGGCGGCAAGGTTAAGCTTGAGGCG
CAGCCTTCTTCGGCCAAGGCCGACAGCGACTCGGTTCGGCCGCGGCTGGC
GAACGGCGCCGATTGCTCGCCGTCCAGCGACGGCGCGACCGAATGCGAAG
AAGAAACGCAGGACCTGCAGCTCAGCAACAGCAGCGGCAGCATCATGTCC
GTGGACGAGGACGAGGCCCCCCTGCCGTCCTCCCTCCTGCCGGCGGGCTG
GAACGAGCGCCCTTCGCTCAGTTACATCGGGGACTTGATCCGCGTCGGGG
AAGAGCTGAACGCGCCGGAGCAGACCCTAGAGAGCCTCCGCGAGATCGTG
GACGCTTGCGCGGGCTGGGTGAAGACCATCGAGGGGATCCTGGGCCCCGA
CGGCGCGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7828:115..774+

>mRNA_Ecto-sp13_S_contig7828.19081.1 ID=mRNA_Ecto-sp13_S_contig7828.19081.1|Name=mRNA_Ecto-sp13_S_contig7828.19081.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7828:115..774+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTGCGCGTGCCCGGCTTCGGAGTACACGTTCTACCAGCGCAAGGACGA
GGCGCAGCTCCGGAGGGCGGCCAAGGACCTTACTTCCAGCGAGGAGTATA
CGGAGACGTGGGTGGAGGAGGCTAGGTTAGCGCTGGCGGCGGCGAGGAGC
ACCGGCGGCGGGATGGTTAACAGCTTCCGCTCGGTGAAGGGTGCTAAGGG
CAGCGGAGGTAGTTGTCGTGAAGACGAAGCTTCCCAGTTGCCGAGAGAGA
ACGGAACCGGCGGCGGCGGCGGTGGCGGCGGCAAGGTTAAGCTTGAGGCG
CAGCCTTCTTCGGCCAAGGCCGACAGCGACTCGGTTCGGCCGCGGCTGGC
GAACGGCGCCGATTGCTCGCCGTCCAGCGACGGCGCGACCGAATGCGAAG
AAGAAACGCAGGACCTGCAGCTCAGCAACAGCAGCGGCAGCATCATGTCC
GTGGACGAGGACGAGGCCCCCCTGCCGTCCTCCCTCCTGCCGGCGGGCTG
GAACGAGCGCCCTTCGCTCAGTTACATCGGGGACTTGATCCGCGTCGGGG
AAGAGCTGAACGCGCCGGAGCAGACCCTAGAGAGCCTCCGCGAGATCGTG
GACGCTTGCGCGGGCTGGGTGAAGACCATCGAGGGGATCCTGGGCCCCGA
CGGCGCGGCC
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