mRNA_Ecto-sp13_S_contig12271.1908.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: D7G5K1_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K1_ECTSI) HSP 1 Score: 297 bits (760), Expect = 1.640e-90 Identity = 152/155 (98.06%), Postives = 154/155 (99.35%), Query Frame = 1
Query: 1 LYRLVHRQKQTVDDDEVLEESEFTPRRLFLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAEAVRLECLTSLDLSCNKIDHSALVLREYVASARCKLQRLSLSNADVDDDECNSLME 465
LYRLVHRQKQTVDDDE LEESEFTPRRLFLRDTLARGITPSPTMMR+RKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASL+NILAEAVRLECLTSLDLSCNKIDHSALVLREYVASARCKLQRLSLSNADVDDDECNSLME
Sbjct: 214 LYRLVHRQKQTVDDDEALEESEFTPRRLFLRDTLARGITPSPTMMRNRKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLNNILAEAVRLECLTSLDLSCNKIDHSALVLREYVASARCKLQRLSLSNADVDDDECNSLME 368
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: A0A067CIT8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CIT8_SAPPC) HSP 1 Score: 89.4 bits (220), Expect = 8.830e-18 Identity = 55/142 (38.73%), Postives = 77/142 (54.23%), Query Frame = 1
Query: 37 DDDE----VLEESEFTPRRLFLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAEAVRLECLTSLDLSCNKIDHSAL-VLREYVASARCKLQRLSLSNADVDDDE 447
DDDE + FT R F L R + PS ++ + +D+ G+GD + A ++ +PN+ SLNLR NRLTDA L +I+A + C+ LDLS NK+D + L Y+ S C LQ L +S+ADVDD E
Sbjct: 101 DDDEPDFDTMLCEPFTARHEFASRCLERELPPSAGLLLRKTQTAEIDISHYGMGDDLARVWAASIVDVPNVTSLNLRNNRLTDAGLPSIIAALIAKPCIAILDLSENKLDSECVDALATYLQSPVCALQELRMSHADVDDAE 242
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: A0A835YQG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG6_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 1.030e-16 Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 1
Query: 58 ESEFTPRRLFLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAEAVRLECLTSLDLSCNKIDHSALVLREYVA 387
E+ TPR+ FLR LA G P P ++R P L+L + LGD++ ++A LP LP + S+N+ +NRLTDASL + V + L LDL NK+D +A ++R Y+A
Sbjct: 724 EAGHTPRQAFLRRLLAVGAPPLPALLRHTAHPDELNLEHKALGDKVVAAVAAVLPRLPCVRSVNVADNRLTDASLVPLCRTVVAMPALARLDLGFNKVDDAARIIRAYLA 833
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: A0A1V9ZJY5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJY5_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.940e-16 Identity = 53/149 (35.57%), Postives = 76/149 (51.01%), Query Frame = 1
Query: 4 YRLVHRQKQTVDDDEVLEESEFTPRRLFLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAEAVRLECLTSLDLSCNKIDHSAL-VLREYVASARCKLQRLSLSNADVDDDE 447
YR V + D + + FT R F L + + PS ++ +++ G+GD + + A + +PN+ SLNLR NRLTDA L +++A + LDLS NK+D A+ L Y+A C LQ L LS ADVDD E
Sbjct: 93 YRAVVPECDDEPDFDTMLTDPFTARHEFAAQCLTKNVLPSAGLLLRSTISQEINVSHMGIGDDVAVVWAAAIGGVPNVTSLNLRNNRLTDAGLPSVIAALTTKPEIVVLDLSENKLDGEAINALAAYLAEQSCALQELRLSRADVDDIE 241
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: A0A6A3WSG6_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WSG6_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.510e-14 Identity = 52/141 (36.88%), Postives = 73/141 (51.77%), Query Frame = 1
Query: 40 DDEVLEESEFTPRRLFLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAEAVRLECLTSLDLSCNKID-HSALVLREYVASARCKLQRLSLSNADVDDDECNSL 459
D +L +PR LFL LA P ++R + D QGLGD + A LP LP + S+N+ +NRLTDA++ +L LTSLD+S N + +A VLR Y+ S C L+ L+L+ + D EC L
Sbjct: 269 DKNLLSAVPRSPRALFLGACLAGSQAPPTLLLRKEHNKRAFDFSHQGLGDNFIVRFAACLPELPLVESINVCDNRLTDAAISCLLRALENKPHLTSLDVSSNPMGVDAASVLRGYIRSNLCTLRVLALNEIALSDHECARL 409
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: G5ABF5_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5ABF5_PHYSP) HSP 1 Score: 76.3 bits (186), Expect = 3.130e-13 Identity = 49/131 (37.40%), Postives = 68/131 (51.91%), Query Frame = 1
Query: 70 TPRRLFLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAEAVRLECLTSLDLSCNKID-HSALVLREYVASARCKLQRLSLSNADVDDDECNSL 459
+PR LFL LA P ++R + D QGL D + A LP LP + S+N+ +NRLTDA + +L LTSLD+S N + +A VLR Y+ S C L+ L+L+ + D EC L
Sbjct: 173 SPRALFLGACLAGSQAPLTLLLRKEHNKRAFDFSHQGLDDNFIVRFAACLPELPLVESINVCDNRLTDAGISCLLRALENKPHLTSLDVSSNPMGIDAANVLRGYIRSNLCTLRVLALNEISLSDQECARL 303
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: A0A835YH25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH25_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 2.910e-12 Identity = 46/111 (41.44%), Postives = 62/111 (55.86%), Query Frame = 1
Query: 160 LDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAEAVRLECLTSLDLSCNKIDHSALVLREYVASA----------RCKLQRLSLSNADVDDDECNSLM 462
L L +GLGD +GL+LA L LLP L +L+LR+NRLTDASL ++ AV ++D +A LR ++A + C L+ L LS ADVDD EC +M
Sbjct: 335 LRLAHRGLGDALGLALARALRLLPGLDTLDLRDNRLTDASLVPLVDAAVXXXXXXXXXXXXXEVDAAAAALRAHLARSGSXXXXXXXXACALRALGLSRADVDDGECAEIM 445
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: A0A225WZX9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZX9_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.830e-11 Identity = 50/138 (36.23%), Postives = 74/138 (53.62%), Query Frame = 1
Query: 64 EFTPRRLFLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPL-LPNLASLNLRENRLTDASLDNIL---AEAVRLECLTSLDLSCNKID-HSALVLREYVASARCKLQRLSLSNADVDDDECNSLM 462
+ +PR FL A+ P ++R+R + D FQ LGD + A +L LP + +++R+NRLTD L+ +L +E L LD+S N+I SA LR Y+ S C ++ L + NAD+DD EC S M
Sbjct: 355 KLSPRAHFLASCTAKSQVVVPFLIRNR-NTKVFDFSFQSLGDASISAFAKSLVHDLPFVEEISVRDNRLTDDGLNELLQAVSEGSSTMSLRRLDISQNQIGPKSAQTLRSYLVSPSCTVEMLHVDNADIDDHECASFM 491
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: A0A7S3ZIZ3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZIZ3_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 3.390e-11 Identity = 48/144 (33.33%), Postives = 77/144 (53.47%), Query Frame = 1
Query: 43 DEVLEESEFTPRRL---FLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAEAVRLECLTSLDLSCNKIDHSAL-VLREYVASARCKLQRLSLSNADVDDDECNSLM 462
DE LEE P+++ F + + G+ P P +++ +D L L D + ++A LP LP+L +++ +NRL D +L I+ +TSLDLS NKID A + + + L+ L +S+ADVDD EC +L+
Sbjct: 271 DEYLEEESDHPQQIARDFNKVLVDLGVAPKPALLKQTRDG-VLALRALCPNDAVARAIAKVLPRLPHLYKVDIADNRLGDVALKEIVDAVNTTSTITSLDLSRNKIDDEASEAIMALIGNHEHGLKELVMSDADVDDGECATLI 413
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: H3GFK2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFK2_PHYRM) HSP 1 Score: 70.5 bits (171), Expect = 3.390e-11 Identity = 54/163 (33.13%), Postives = 86/163 (52.76%), Query Frame = 1
Query: 7 RLVHRQKQTV---DDDEVLEESEFTPRRLFLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPL-LPNLASLNLRENRLTDASLDNIL------AEAVRLECLTSLDLSCNKID-HSALVLREYVASARCKLQRLSLSNADVDDDECNSLM 462
RLV R ++ D ++ + +PR FL A+ P ++R+R + D FQ LGD + A +L LP++ +++R+NRLTD L+ +L + + L CL D+S N+I SA L+ Y+ S RC ++ L + NAD+DD EC + M
Sbjct: 333 RLVSRVSSSIIMEDRPKLPLRDKLSPRAHFLASCAAKSQVVVPFLIRNR-NTKVFDFSFQSLGDASISAFAKSLVHDLPHVEEISVRDNRLTDDGLNELLQAVSDDSSTLNLRCL---DISQNQIGPKSAQTLQLYLVSPRCTVEMLHVDNADIDDHECAAFM 491 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12271.1908.1 >prot_Ecto-sp13_S_contig12271.1908.1 ID=prot_Ecto-sp13_S_contig12271.1908.1|Name=mRNA_Ecto-sp13_S_contig12271.1908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp LYRLVHRQKQTVDDDEVLEESEFTPRRLFLRDTLARGITPSPTMMRSRKDback to top mRNA from alignment at Ecto-sp13_S_contig12271:659..2279+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12271.1908.1 ID=mRNA_Ecto-sp13_S_contig12271.1908.1|Name=mRNA_Ecto-sp13_S_contig12271.1908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12271:659..2279+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12271:659..2279+ >mRNA_Ecto-sp13_S_contig12271.1908.1 ID=mRNA_Ecto-sp13_S_contig12271.1908.1|Name=mRNA_Ecto-sp13_S_contig12271.1908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12271:659..2279+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |