mRNA_Ecto-sp13_S_contig12271.1908.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12271.1908.1
Unique NamemRNA_Ecto-sp13_S_contig12271.1908.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: D7G5K1_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K1_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 1.640e-90
Identity = 152/155 (98.06%), Postives = 154/155 (99.35%), Query Frame = 1
Query:    1 LYRLVHRQKQTVDDDEVLEESEFTPRRLFLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAEAVRLECLTSLDLSCNKIDHSALVLREYVASARCKLQRLSLSNADVDDDECNSLME 465
            LYRLVHRQKQTVDDDE LEESEFTPRRLFLRDTLARGITPSPTMMR+RKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASL+NILAEAVRLECLTSLDLSCNKIDHSALVLREYVASARCKLQRLSLSNADVDDDECNSLME
Sbjct:  214 LYRLVHRQKQTVDDDEALEESEFTPRRLFLRDTLARGITPSPTMMRNRKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLNNILAEAVRLECLTSLDLSCNKIDHSALVLREYVASARCKLQRLSLSNADVDDDECNSLME 368          
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: A0A067CIT8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CIT8_SAPPC)

HSP 1 Score: 89.4 bits (220), Expect = 8.830e-18
Identity = 55/142 (38.73%), Postives = 77/142 (54.23%), Query Frame = 1
Query:   37 DDDE----VLEESEFTPRRLFLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAEAVRLECLTSLDLSCNKIDHSAL-VLREYVASARCKLQRLSLSNADVDDDE 447
            DDDE     +    FT R  F    L R + PS  ++  +     +D+   G+GD +    A ++  +PN+ SLNLR NRLTDA L +I+A  +   C+  LDLS NK+D   +  L  Y+ S  C LQ L +S+ADVDD E
Sbjct:  101 DDDEPDFDTMLCEPFTARHEFASRCLERELPPSAGLLLRKTQTAEIDISHYGMGDDLARVWAASIVDVPNVTSLNLRNNRLTDAGLPSIIAALIAKPCIAILDLSENKLDSECVDALATYLQSPVCALQELRMSHADVDDAE 242          
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: A0A835YQG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG6_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.030e-16
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 1
Query:   58 ESEFTPRRLFLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAEAVRLECLTSLDLSCNKIDHSALVLREYVA 387
            E+  TPR+ FLR  LA G  P P ++R    P  L+L  + LGD++  ++A  LP LP + S+N+ +NRLTDASL  +    V +  L  LDL  NK+D +A ++R Y+A
Sbjct:  724 EAGHTPRQAFLRRLLAVGAPPLPALLRHTAHPDELNLEHKALGDKVVAAVAAVLPRLPCVRSVNVADNRLTDASLVPLCRTVVAMPALARLDLGFNKVDDAARIIRAYLA 833          
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: A0A1V9ZJY5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJY5_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.940e-16
Identity = 53/149 (35.57%), Postives = 76/149 (51.01%), Query Frame = 1
Query:    4 YRLVHRQKQTVDDDEVLEESEFTPRRLFLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAEAVRLECLTSLDLSCNKIDHSAL-VLREYVASARCKLQRLSLSNADVDDDE 447
            YR V  +     D + +    FT R  F    L + + PS  ++        +++   G+GD + +  A  +  +PN+ SLNLR NRLTDA L +++A       +  LDLS NK+D  A+  L  Y+A   C LQ L LS ADVDD E
Sbjct:   93 YRAVVPECDDEPDFDTMLTDPFTARHEFAAQCLTKNVLPSAGLLLRSTISQEINVSHMGIGDDVAVVWAAAIGGVPNVTSLNLRNNRLTDAGLPSVIAALTTKPEIVVLDLSENKLDGEAINALAAYLAEQSCALQELRLSRADVDDIE 241          
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: A0A6A3WSG6_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WSG6_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.510e-14
Identity = 52/141 (36.88%), Postives = 73/141 (51.77%), Query Frame = 1
Query:   40 DDEVLEESEFTPRRLFLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAEAVRLECLTSLDLSCNKID-HSALVLREYVASARCKLQRLSLSNADVDDDECNSL 459
            D  +L     +PR LFL   LA    P   ++R   +    D   QGLGD   +  A  LP LP + S+N+ +NRLTDA++  +L        LTSLD+S N +   +A VLR Y+ S  C L+ L+L+   + D EC  L
Sbjct:  269 DKNLLSAVPRSPRALFLGACLAGSQAPPTLLLRKEHNKRAFDFSHQGLGDNFIVRFAACLPELPLVESINVCDNRLTDAAISCLLRALENKPHLTSLDVSSNPMGVDAASVLRGYIRSNLCTLRVLALNEIALSDHECARL 409          
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: G5ABF5_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5ABF5_PHYSP)

HSP 1 Score: 76.3 bits (186), Expect = 3.130e-13
Identity = 49/131 (37.40%), Postives = 68/131 (51.91%), Query Frame = 1
Query:   70 TPRRLFLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAEAVRLECLTSLDLSCNKID-HSALVLREYVASARCKLQRLSLSNADVDDDECNSL 459
            +PR LFL   LA    P   ++R   +    D   QGL D   +  A  LP LP + S+N+ +NRLTDA +  +L        LTSLD+S N +   +A VLR Y+ S  C L+ L+L+   + D EC  L
Sbjct:  173 SPRALFLGACLAGSQAPLTLLLRKEHNKRAFDFSHQGLDDNFIVRFAACLPELPLVESINVCDNRLTDAGISCLLRALENKPHLTSLDVSSNPMGIDAANVLRGYIRSNLCTLRVLALNEISLSDQECARL 303          
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: A0A835YH25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH25_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.910e-12
Identity = 46/111 (41.44%), Postives = 62/111 (55.86%), Query Frame = 1
Query:  160 LDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAEAVRLECLTSLDLSCNKIDHSALVLREYVASA----------RCKLQRLSLSNADVDDDECNSLM 462
            L L  +GLGD +GL+LA  L LLP L +L+LR+NRLTDASL  ++  AV             ++D +A  LR ++A +           C L+ L LS ADVDD EC  +M
Sbjct:  335 LRLAHRGLGDALGLALARALRLLPGLDTLDLRDNRLTDASLVPLVDAAVXXXXXXXXXXXXXEVDAAAAALRAHLARSGSXXXXXXXXACALRALGLSRADVDDGECAEIM 445          
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: A0A225WZX9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZX9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.830e-11
Identity = 50/138 (36.23%), Postives = 74/138 (53.62%), Query Frame = 1
Query:   64 EFTPRRLFLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPL-LPNLASLNLRENRLTDASLDNIL---AEAVRLECLTSLDLSCNKID-HSALVLREYVASARCKLQRLSLSNADVDDDECNSLM 462
            + +PR  FL    A+     P ++R+R +    D  FQ LGD    + A +L   LP +  +++R+NRLTD  L+ +L   +E      L  LD+S N+I   SA  LR Y+ S  C ++ L + NAD+DD EC S M
Sbjct:  355 KLSPRAHFLASCTAKSQVVVPFLIRNR-NTKVFDFSFQSLGDASISAFAKSLVHDLPFVEEISVRDNRLTDDGLNELLQAVSEGSSTMSLRRLDISQNQIGPKSAQTLRSYLVSPSCTVEMLHVDNADIDDHECASFM 491          
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: A0A7S3ZIZ3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZIZ3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.390e-11
Identity = 48/144 (33.33%), Postives = 77/144 (53.47%), Query Frame = 1
Query:   43 DEVLEESEFTPRRL---FLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAEAVRLECLTSLDLSCNKIDHSAL-VLREYVASARCKLQRLSLSNADVDDDECNSLM 462
            DE LEE    P+++   F +  +  G+ P P +++  +D   L L      D +  ++A  LP LP+L  +++ +NRL D +L  I+        +TSLDLS NKID  A   +   + +    L+ L +S+ADVDD EC +L+
Sbjct:  271 DEYLEEESDHPQQIARDFNKVLVDLGVAPKPALLKQTRDG-VLALRALCPNDAVARAIAKVLPRLPHLYKVDIADNRLGDVALKEIVDAVNTTSTITSLDLSRNKIDDEASEAIMALIGNHEHGLKELVMSDADVDDGECATLI 413          
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Match: H3GFK2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFK2_PHYRM)

HSP 1 Score: 70.5 bits (171), Expect = 3.390e-11
Identity = 54/163 (33.13%), Postives = 86/163 (52.76%), Query Frame = 1
Query:    7 RLVHRQKQTV---DDDEVLEESEFTPRRLFLRDTLARGITPSPTMMRSRKDPHTLDLGFQGLGDQIGLSLATTLPL-LPNLASLNLRENRLTDASLDNIL------AEAVRLECLTSLDLSCNKID-HSALVLREYVASARCKLQRLSLSNADVDDDECNSLM 462
            RLV R   ++   D  ++    + +PR  FL    A+     P ++R+R +    D  FQ LGD    + A +L   LP++  +++R+NRLTD  L+ +L      +  + L CL   D+S N+I   SA  L+ Y+ S RC ++ L + NAD+DD EC + M
Sbjct:  333 RLVSRVSSSIIMEDRPKLPLRDKLSPRAHFLASCAAKSQVVVPFLIRNR-NTKVFDFSFQSLGDASISAFAKSLVHDLPHVEEISVRDNRLTDDGLNELLQAVSDDSSTLNLRCL---DISQNQIGPKSAQTLQLYLVSPRCTVEMLHVDNADIDDHECAAFM 491          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12271.1908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G5K1_ECTSI1.640e-9098.06Hypothetical leucine rich repeat calcium binding p... [more]
A0A067CIT8_SAPPC8.830e-1838.73Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A835YQG6_9STRA1.030e-1641.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1V9ZJY5_9STRA1.940e-1635.57Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6A3WSG6_9STRA1.510e-1436.88Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
G5ABF5_PHYSP3.130e-1337.40Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A835YH25_9STRA2.910e-1241.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A225WZX9_9STRA1.830e-1136.23Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A7S3ZIZ3_9STRA3.390e-1133.33Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
H3GFK2_PHYRM3.390e-1133.13Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12271contigEcto-sp13_S_contig12271:659..2279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score297.7
Seed ortholog evalue3.1e-78
Seed eggNOG ortholog2880.D7G5K1
Model size468
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Cds size465
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462652.715072-CDS-Ecto-sp13_S_contig12271:658..8271681462652.715072-CDS-Ecto-sp13_S_contig12271:658..827Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12271 659..827 +
1681462652.7286975-CDS-Ecto-sp13_S_contig12271:1249..13621681462652.7286975-CDS-Ecto-sp13_S_contig12271:1249..1362Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12271 1250..1362 +
1681462652.7382336-CDS-Ecto-sp13_S_contig12271:1625..17381681462652.7382336-CDS-Ecto-sp13_S_contig12271:1625..1738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12271 1626..1738 +
1681462652.749171-CDS-Ecto-sp13_S_contig12271:2208..22781681462652.749171-CDS-Ecto-sp13_S_contig12271:2208..2278Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12271 2209..2278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12271.1908.1prot_Ecto-sp13_S_contig12271.1908.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12271 659..2278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12271.1908.1

>prot_Ecto-sp13_S_contig12271.1908.1 ID=prot_Ecto-sp13_S_contig12271.1908.1|Name=mRNA_Ecto-sp13_S_contig12271.1908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp
LYRLVHRQKQTVDDDEVLEESEFTPRRLFLRDTLARGITPSPTMMRSRKD
PHTLDLGFQGLGDQIGLSLATTLPLLPNLASLNLRENRLTDASLDNILAE
AVRLECLTSLDLSCNKIDHSALVLREYVASARCKLQRLSLSNADVDDDEC
NSLME
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mRNA from alignment at Ecto-sp13_S_contig12271:659..2279+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12271.1908.1 ID=mRNA_Ecto-sp13_S_contig12271.1908.1|Name=mRNA_Ecto-sp13_S_contig12271.1908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12271:659..2279+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTACCGCCTGGTGCATCGCCAAAAACAAACGGTGGACGATGACGAAGT TCTCGAAGAGTCGGAGTTCACACCACGGAGGCTGTTCCTCCGGGACACGC TAGCGAGAGGAATAACGCCGTCACCCACCATGATGCGGAGCAGGAAAGAC CCGCACACCCTCGATTTAGGTAATACTGCCGCTACTGCTGCTGCTGCTGC TGCATGTGCCCTCATCGTTACTTCTTCGACACAATTCGCTCTGCTTCTTG CACGAAAGGTTTCCGAATCGGAACCCAATCTCGCGGACCACCCTGCTGAC ACGCACTATGGTACATATTTCGAATGTTCTCTTCGGTTCAGAGGACAAGA TACGAGTATTTGCACATGGGTGTATAGGGAAAGATGGGGTGTGAGGAGGA GGTTCAAGTTGAACAGGGCACAGACGGAGATGTATTAAGACAAAACACAT GACGCACTACCTGGTTGAACCCGAAGCTCTTCCAAACGGTCACTTGACCT CCAAATCGGCCTCAAAGGGAGAATTTTTGACAGTGACAACACGGCGTTTG ACCTCCGCGGCGCCCTCTTGCACACGTTTCACGTCCCGCAGGATTTCAGG GCTTGGGAGACCAAATTGGGCTCTCTCTCGCGACCACTCTCCCCCTCCTG CCCAACCTGGCTTCTCTTAATCTCCGAGAGAACCGCCTCACGGACGCCTC CTTGGTAAGTACTTGGTACTCACCGTTGTCGTTGCGGCGTAGAGATCGAG CAACAGGGACAGGCACATGGCTAGGAGCAAAAACAAGTAACGATCAGTGG AAGTGCAAAAGGTTGACAAACCCCGTCAGATAGCTTGCCGTGAAAATCCT CTGTTCTCCGTTGTAGTGCGATACCCCGAAGCCTTGATTTCCCAAAAGTT GCCTGCGCCGCGAGTACAGCGGATCCTGCATCATCAACCGTGATCTCCTC TTGGTGCATGTTGACAGGACAACATCCTCGCCGAGGCTGTCAGGCTCGAG TGCCTCACGTCGCTCGATCTCTCGTGCAACAAGATCGACCACAGCGCGCT GGTTCTCCGAGAATACGTCGCTTCCGCGAGGTATCTACTAAATACTGTTG TCCTCGATAGCAAGCTGATATTATGTGGCACTGTTGAGCTCCAGTCATGC TCGATAGCAACCGTTCTGTGGCGCTGAATAGCACATTCTTGGCGCGGTAA GTGCGGTTAGGACAGACGGAGGTGGAGCACCACTGCCGCTCTCTCAACCC AGGCCAGTTTTTTCTGTCCATTTGTGGCTGGGCAGCCTTTCCGTTGGGGA GACAGAACAGTTTTGTTACCCTCGAGTGACCTTCGTAACACACGGACCGG TGGGAAGATACTAAGCGAAAACCATCACCCTGCCAGCGGTGAAAGTGCCC TCCCGCAACCCGTCTCACCTACGCCAAAGAGCGGTTCCCTCGTGTTTCCT ATAGAAGACCCAACTTTTGTTTCCTCAATCACCCGACATGATTGTTCCAC GGCTCTTGGCCTACCTCCGCGCCCGACGAAAATCGTGTTGCACCCGATAG GTGCAAATTGCAGCGGCTCTCACTGTCGAACGCGGACGTGGATGACGACG AGTGCAACTCTCTCATGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12271:659..2279+

>mRNA_Ecto-sp13_S_contig12271.1908.1 ID=mRNA_Ecto-sp13_S_contig12271.1908.1|Name=mRNA_Ecto-sp13_S_contig12271.1908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12271:659..2279+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTACCGCCTGGTGCATCGCCAAAAACAAACGGTGGACGATGACGAAGT
TCTCGAAGAGTCGGAGTTCACACCACGGAGGCTGTTCCTCCGGGACACGC
TAGCGAGAGGAATAACGCCGTCACCCACCATGATGCGGAGCAGGAAAGAC
CCGCACACCCTCGATTTAGGATTTCAGGGCTTGGGAGACCAAATTGGGCT
CTCTCTCGCGACCACTCTCCCCCTCCTGCCCAACCTGGCTTCTCTTAATC
TCCGAGAGAACCGCCTCACGGACGCCTCCTTGGACAACATCCTCGCCGAG
GCTGTCAGGCTCGAGTGCCTCACGTCGCTCGATCTCTCGTGCAACAAGAT
CGACCACAGCGCGCTGGTTCTCCGAGAATACGTCGCTTCCGCGAGGTGCA
AATTGCAGCGGCTCTCACTGTCGAACGCGGACGTGGATGACGACGAGTGC
AACTCTCTCATGGAG
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