mRNA_Ecto-sp13_S_contig78212.19075.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78212.19075.1
Unique NamemRNA_Ecto-sp13_S_contig78212.19075.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78212.19075.1 vs. uniprot
Match: A0A6H5KS36_9PHAE (Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS36_9PHAE)

HSP 1 Score: 269 bits (687), Expect = 6.520e-83
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 1 
Query:    1 DFTEAFSGLRVRNRLLSAEDMRVRMRGRKVHRLDALRAVPPRALESQDPADAWAAIGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGTHWTVCEGTLIAVVGAKVLPDKGSGGGNAPQRLAFSVDSPWQV 426
            DFTEAFSGLRVRNRLLSAEDMRVRMRGRKVHRLD+LR VPPRALESQDPADAWAA+GVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALG+HWTVCEGTLIAVVGAKVLPDKG  GGNAPQRLAFSVDSPWQV
Sbjct:   94 DFTEAFSGLRVRNRLLSAEDMRVRMRGRKVHRLDSLRTVPPRALESQDPADAWAAVGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGSHWTVCEGTLIAVVGAKVLPDKGGDGGNAPQRLAFSVDSPWQV 235
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78212.19075.1 vs. uniprot
Match: D8LM23_ECTSI (Protein MCM10 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM23_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 3.230e-74
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 1 
Query:   61 MRVRMRGRKVHRLDALRAVPPRALESQDPADAWAAIGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGTHWTVCEGTLIAVVGAKVLPDKGSGGGNAPQRLAFSVDSPWQV 426
            MRVRMRGRKVHRLDALRAVPPRALESQDPADAWAA+GVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALG+HWTVCEGTLIAVVGAKVLPDKG GGGNAPQRLAFSVDSPWQV
Sbjct:    1 MRVRMRGRKVHRLDALRAVPPRALESQDPADAWAAVGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGSHWTVCEGTLIAVVGAKVLPDKGGGGGNAPQRLAFSVDSPWQV 122
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78212.19075.1 vs. uniprot
Match: A0A835YRW3_9STRA (Protein MCM10 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW3_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.590e-21
Identity = 56/140 (40.00%), Postives = 81/140 (57.86%), Query Frame = 1 
Query:   10 EAFSGLRVRNRLLSAEDMRVRMR-GRKVHRLDALRAVPPRALESQDPADAWAAIGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGTHWTVCEGTLIAVVGAKVLPDKGSGGGNAPQRLAFSVDSPWQV 426
            E  SG+RV    L  E     +R G K  +LD L ++  +ALES DP  AWA +GVLV KS +R  ++G  F  W LS L+    E +L L ++AL +HW++CEG+++ ++GA  LP +       P  L F+ D+ WQV
Sbjct:    2 ERLSGIRVNKPTLVDEPSLEALRQGYKFFKLDTLPSIARQALESTDPMHAWATVGVLVRKSQQRDTSSGKPFVKWGLSGLAAGSKESTLLLSKDALSSHWSICEGSVLMLLGAHALPKQEQSSAGDP--LVFAADASWQV 139
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78212.19075.1 vs. uniprot
Match: A0A1X7VR66_AMPQE (Protein MCM10 homolog n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VR66_AMPQE)

HSP 1 Score: 90.1 bits (222), Expect = 2.940e-18
Identity = 51/115 (44.35%), Postives = 70/115 (60.87%), Query Frame = 1 
Query:    7 TEAFSGLRVRNRLLSAEDMRVRMRGRKVHRLDALRAVPPRALESQDPADAWAAIGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGTHWTVCEGTLIAVVGAKV 351
            TE F+GLR++N L+S+E M+ RM GRK+ R+  +   P    E  D A  W   GVLV+K P +    G  FSVW LSDLS + + VSLFLF +A   HW    GT++A++  K+
Sbjct:  126 TERFTGLRIKNPLVSSELMKERMSGRKMIRIPQI--YPNIKKEDFDIAGDWVTGGVLVNKLPPKNTTKGSKFSVWKLSDLSSQNDVVSLFLFDKAFDVHWKTPIGTVVAILNPKI 238
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78212.19075.1 vs. uniprot
Match: A0A485LLY3_9STRA (Aste57867_23134 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLY3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 4.730e-15
Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = 1 
Query:   10 EAFSGLRVRNRLLSAEDMRVRMRGRKVHRLDALRAVPPRALESQDPADAWAAIGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGTHWTVCEGTLIAVVGAKVLPDKGSGGGNAPQRLAFSV 408
            E+FS LR+++RL+SA++MR +M GRK   L AL   P R LESQD  D W  I V+  K+  +  A    + VWTLSDL      +S+FL+  A   HW   EG+++A++   V+P K  G  +    L F V
Sbjct:  137 ESFSSLRIKDRLVSADEMRDQMEGRKFIPLSALEKTPMRELESQD-VD-WVTIAVVSKKTMGK--AEHSPYVVWTLSDLDNAM--ISVFLYGGAYDDHWKELEGSIVALINPMVMPAKEKGKFSLRVTLGFHV 263
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78212.19075.1 vs. uniprot
Match: A0A2D4CFQ3_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFQ3_PYTIN)

HSP 1 Score: 79.0 bits (193), Expect = 1.720e-14
Identity = 48/139 (34.53%), Postives = 73/139 (52.52%), Query Frame = 1 
Query:   10 EAFSGLRVRNRLLSAEDMRVRMRGRKVHRLDALRAVPPRALESQDPADAWAAIGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGTHWTVCEGTLIAVVGAKVLPDKGSGGGNAPQRLAFSVDSPWQV 426
            E FSGLR+  R +SA+++   M GR+  RL  + ++P   L   D    W  IGV+  K+  +  +NG +F VW LSDL     E+ +FLF  A  +HW   EG+++A++ A V+P       +   R A     P +V
Sbjct:   73 ERFSGLRIAERTISADELAGEMTGRRFIRLREMDSIPRDVLT--DEKTDWVTIGVVARKTLSKATSNGSTFMVWGLSDLDT--TELGVFLFDAAYESHWRELEGSIVAILNATVMP------ASEKNRFALKASRPEEV 201
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78212.19075.1 vs. uniprot
Match: A0A4W3J4D2_CALMI (Protein MCM10 homolog n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3J4D2_CALMI)

HSP 1 Score: 79.0 bits (193), Expect = 2.290e-14
Identity = 50/141 (35.46%), Postives = 79/141 (56.03%), Query Frame = 1 
Query:   10 EAFSGLRVRNRLLSAEDMRVRMRGRKVHRLDALRA-VPPRALESQDPADAWAAIGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGTHWTVCEGTLIAVVGAKVL-PDKGSGGGNAPQRLAFSVDSPWQV 426
            + FSGLR+RN L+S+ +M  +M+ RK+ RL  LR+ +    LE+ D    W   GV+  K+  + ++NG +FS+W L+DL      +SLFLF      HW    GT+I ++ A  + P +GS      + +  SVD P ++
Sbjct:   42 DRFSGLRIRNPLVSSTEMERKMQSRKMIRLSQLRSKLATENLEATD----WVTFGVVCKKTTPQSSSNGKTFSIWRLTDLCSSSLNLSLFLFGNVHKEHWKTETGTVIGLLNANPMKPKEGS------EEVCLSVDHPQKI 172
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78212.19075.1 vs. uniprot
Match: V9KEH6_CALMI (Protein MCM10 homolog (Fragment) n=3 Tax=Callorhinchus milii TaxID=7868 RepID=V9KEH6_CALMI)

HSP 1 Score: 79.0 bits (193), Expect = 2.370e-14
Identity = 50/141 (35.46%), Postives = 79/141 (56.03%), Query Frame = 1 
Query:   10 EAFSGLRVRNRLLSAEDMRVRMRGRKVHRLDALRA-VPPRALESQDPADAWAAIGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGTHWTVCEGTLIAVVGAKVL-PDKGSGGGNAPQRLAFSVDSPWQV 426
            + FSGLR+RN L+S+ +M  +M+ RK+ RL  LR+ +    LE+ D    W   GV+  K+  + ++NG +FS+W L+DL      +SLFLF      HW    GT+I ++ A  + P +GS      + +  SVD P ++
Sbjct:  228 DRFSGLRIRNPLVSSTEMERKMQSRKMIRLSQLRSKLATENLEATD----WVTFGVVCKKTTPQSSSNGKTFSIWRLTDLCSSSLNLSLFLFGNVHKEHWKTETGTVIGLLNANPMKPKEGS------EEVCLSVDHPQKI 358
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78212.19075.1 vs. uniprot
Match: A0A662WYA4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WYA4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.550e-14
Identity = 44/116 (37.93%), Postives = 68/116 (58.62%), Query Frame = 1 
Query:   10 EAFSGLRVRNRLLSAEDMRVRMRGRKVHRLDALRAVPPRALESQDPADAWAAIGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGTHWTVCEGTLIAVVGAKVLP 357
            E +SGLR+ +R +SA+++R  M GRK  +L  +  VP     +      W  IGVL+ K+  +  ANG +F VW LSDL+    E+ +FLF +A   HW    G+++A++ A +LP
Sbjct:   72 ETYSGLRISDRTVSAQELRDEMEGRKYIQLGQMDLVPKDTFTNGT--TDWLTIGVLIRKTLSKPTANGSTFMVWGLSDLTG--TELGVFLFDDAYAAHWKELTGSVVALMNAALLP 183
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78212.19075.1 vs. uniprot
Match: A0A662XXR7_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXR7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.660e-14
Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = 1 
Query:   10 EAFSGLRVRNRLLSAEDMRVRMRGRKVHRLDALRAVPPRALESQDPADAWAAIGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGTHWTVCEGTLIAVVGAKVLP 357
            E +SGLR+ +R +SA+++R  M GRK   L  +  + P+   +    D W  IGVL+ K+  +  ANG +F VW LSDL+    E+ +FLF +A   HW    G+++A++ A +LP
Sbjct:  105 ETYSGLRISDRTVSAQELRDEMEGRKYIHLGQM-DLAPKDTFTNGTTD-WVTIGVLIRKTLSKPTANGSTFMVWGLSDLNG--TELGVFLFDDAYAAHWKELVGSVVALMNAALLP 216
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78212.19075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KS36_9PHAE6.520e-8395.77Protein MCM10 homolog n=1 Tax=Ectocarpus sp. CCAP ... [more]
D8LM23_ECTSI3.230e-7497.54Protein MCM10 homolog n=1 Tax=Ectocarpus siliculos... [more]
A0A835YRW3_9STRA5.590e-2140.00Protein MCM10 homolog n=1 Tax=Tribonema minus TaxI... [more]
A0A1X7VR66_AMPQE2.940e-1844.35Protein MCM10 homolog n=1 Tax=Amphimedon queenslan... [more]
A0A485LLY3_9STRA4.730e-1540.60Aste57867_23134 protein n=1 Tax=Aphanomyces stella... [more]
A0A2D4CFQ3_PYTIN1.720e-1434.53Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A4W3J4D2_CALMI2.290e-1435.46Protein MCM10 homolog n=1 Tax=Callorhinchus milii ... [more]
V9KEH6_CALMI2.370e-1435.46Protein MCM10 homolog (Fragment) n=3 Tax=Callorhin... [more]
A0A662WYA4_9STRA3.550e-1437.93Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A662XXR7_9STRA8.660e-1437.93Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78212contigEcto-sp13_S_contig78212:57..482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score240.0
Seed ortholog evalue6.9e-61
Seed eggNOG ortholog2880.D8LM23
Preferred nameMCM10
Model size426
KEGG koko:K10736
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0003896,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0022616,GO:0030466,GO:0031298,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035861,GO:0040029,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045740,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0090734,GO:0097159,GO:0097747,GO:0140098,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903932,GO:1903934,GO:1904931,GO:1990837,GO:2000105,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001141
Exons1
EggNOG free text desc.DNA replication origin binding
EggNOG OGsKOG3056@1,KOG3056@2759
Cds size426
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464052.8538637-CDS-Ecto-sp13_S_contig78212:56..4821681464052.8538637-CDS-Ecto-sp13_S_contig78212:56..482Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78212 57..482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78212.19075.1prot_Ecto-sp13_S_contig78212.19075.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78212 57..482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78212.19075.1

>prot_Ecto-sp13_S_contig78212.19075.1 ID=prot_Ecto-sp13_S_contig78212.19075.1|Name=mRNA_Ecto-sp13_S_contig78212.19075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
DFTEAFSGLRVRNRLLSAEDMRVRMRGRKVHRLDALRAVPPRALESQDPA
DAWAAIGVLVSKSPRRQAANGGSFSVWTLSDLSRRENEVSLFLFQEALGT
HWTVCEGTLIAVVGAKVLPDKGSGGGNAPQRLAFSVDSPWQV
back to top

mRNA from alignment at Ecto-sp13_S_contig78212:57..482-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78212.19075.1 ID=mRNA_Ecto-sp13_S_contig78212.19075.1|Name=mRNA_Ecto-sp13_S_contig78212.19075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78212:57..482- (Ectocarpus species13 EcNAP12_S_4_19m)
GACTTCACGGAGGCCTTCTCCGGGCTGCGCGTCAGGAACAGGCTCCTCTC
CGCCGAGGACATGCGCGTCCGCATGAGGGGGCGCAAGGTGCACCGCCTCG
ATGCCCTGCGGGCGGTCCCGCCGAGGGCCCTCGAGAGCCAGGACCCGGCC
GACGCGTGGGCGGCCATTGGCGTCCTCGTGTCCAAGTCGCCCCGGCGGCA
GGCCGCCAACGGCGGGAGCTTCTCCGTCTGGACGCTGAGCGACCTGTCTC
GCAGGGAGAACGAAGTGTCCCTCTTCCTCTTCCAGGAGGCACTGGGCACG
CACTGGACCGTGTGCGAGGGGACGCTAATCGCCGTGGTTGGCGCCAAAGT
GCTGCCGGACAAGGGCAGCGGCGGCGGGAACGCTCCTCAGAGGCTGGCGT
TCTCGGTGGACTCTCCCTGGCAGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78212:57..482-

>mRNA_Ecto-sp13_S_contig78212.19075.1 ID=mRNA_Ecto-sp13_S_contig78212.19075.1|Name=mRNA_Ecto-sp13_S_contig78212.19075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78212:57..482- (Ectocarpus species13 EcNAP12_S_4_19m)
GACTTCACGGAGGCCTTCTCCGGGCTGCGCGTCAGGAACAGGCTCCTCTC
CGCCGAGGACATGCGCGTCCGCATGAGGGGGCGCAAGGTGCACCGCCTCG
ATGCCCTGCGGGCGGTCCCGCCGAGGGCCCTCGAGAGCCAGGACCCGGCC
GACGCGTGGGCGGCCATTGGCGTCCTCGTGTCCAAGTCGCCCCGGCGGCA
GGCCGCCAACGGCGGGAGCTTCTCCGTCTGGACGCTGAGCGACCTGTCTC
GCAGGGAGAACGAAGTGTCCCTCTTCCTCTTCCAGGAGGCACTGGGCACG
CACTGGACCGTGTGCGAGGGGACGCTAATCGCCGTGGTTGGCGCCAAAGT
GCTGCCGGACAAGGGCAGCGGCGGCGGGAACGCTCCTCAGAGGCTGGCGT
TCTCGGTGGACTCTCCCTGGCAGGTG
back to top