mRNA_Ecto-sp13_S_contig12270.1907.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12270.1907.1
Unique NamemRNA_Ecto-sp13_S_contig12270.1907.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12270.1907.1 vs. uniprot
Match: D7FLN0_ECTSI (Holocytochrome c-type synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN0_ECTSI)

HSP 1 Score: 768 bits (1983), Expect = 2.840e-273
Identity = 405/441 (91.84%), Postives = 416/441 (94.33%), Query Frame = 3
Query:   27 SCPVKTLLPGSEAGSAAPASSADAPSSSCPVKEENRSKVAKYLHPHKYNVYSQRIGSKDGLDPTNNMPANPNQQPAPGQEKPLSTARVTSTIPKGGEETTWTYPSPQMFWNALSRKGKAENTEEGDMDIVVSIHNNMNELTWKKILEWEKLRSRGGSGVNGAEPRLLRFLGRPNDTAPKALAKMMLGHPLPFDRHDWVVDRGGDERRYVIDYYYDDGAVDEEGMPGLHAEGAVRSIKVDVRPALDSFRDLADRFVQMPFARLTGRSEFVPLSLRPSPTMKAREPWAKLRMDEGLPSTPPAPAGAGSATXXXASSATGAPLSTRERDARALKRVQKKCAKPLGALRAAEGAGDAELAKAAALKLEYCTARYLCKKEALAYXXXXXYAGSSGSIVGSDTAHAYWAEMALERRLEDMRGALSAFTERQMEARRREKEEGGDGEA 1349
            SCPVKTLLPGS A       SADAP+SSCPVKEENRSKVAKYLHPHKYNVYSQRI ++DGLDPTNNMPANPNQQPAPGQEKPLSTARV STIPKGGEETTWTYPSPQMFWNALSRKGKA+NTEEGDMDIVVSIHNNMNELTW KILEWEKLRSRGGSGV+GAEPRLLRFLGRPNDTAPKALAKMMLGHPLPFDRHDWVVDRGGDERRYVIDYYYDDGAVDEEGMPGLHAEGAV+SIKVDVRPALDSFRDLADRFVQMPFARLTGRSEFVPLSLRPSPTMKAREPWAKLRMD+GLPS PPA A      XXX  SATGAP STRERDARALKRVQKKCAKPLGALRAAEGAGDA LA+AAALKLEYCTARYLCKKEALA XXXXX AGSSGSIVGSDTAHAYWAEMALERRLEDMRGAL+AFTERQMEARRRE+EEGG+GEA
Sbjct:   70 SCPVKTLLPGSGAXXXXXXXSADAPTSSCPVKEENRSKVAKYLHPHKYNVYSQRIDTRDGLDPTNNMPANPNQQPAPGQEKPLSTARVPSTIPKGGEETTWTYPSPQMFWNALSRKGKADNTEEGDMDIVVSIHNNMNELTWTKILEWEKLRSRGGSGVDGAEPRLLRFLGRPNDTAPKALAKMMLGHPLPFDRHDWVVDRGGDERRYVIDYYYDDGAVDEEGMPGLHAEGAVKSIKVDVRPALDSFRDLADRFVQMPFARLTGRSEFVPLSLRPSPTMKAREPWAKLRMDQGLPSPPPAAAXXXXXXXXXXXSATGAPPSTRERDARALKRVQKKCAKPLGALRAAEGAGDAALAEAAALKLEYCTARYLCKKEALAXXXXXXXAGSSGSIVGSDTAHAYWAEMALERRLEDMRGALTAFTERQMEARRREEEEGGEGEA 510          
BLAST of mRNA_Ecto-sp13_S_contig12270.1907.1 vs. uniprot
Match: A0A7S3Y2G6_HETAK (Holocytochrome c-type synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2G6_HETAK)

HSP 1 Score: 287 bits (734), Expect = 5.030e-86
Identity = 147/266 (55.26%), Postives = 181/266 (68.05%), Query Frame = 3
Query:   93 DAPSSSCPVKEE-------NRSKVAKYLHPHKYNVYSQRIGSKDGLDPTNNMPANPNQQPAPGQEKPLSTARVTSTIPKGGEETTWTYPSPQMFWNALSRKGKAENTEEGDMDIVVSIHNNMNELTWKKILEWEKLRSRGGSGVNGAEPRLLRFLGRPNDTAPKALAKMMLGHPLPFDRHDWVVDRGGDERRYVIDYYYDDGAVDEEGMPGLHAEGAVRSIKVDVRPALDSFRDLADRFVQMPFARLTGRSEFVPLSLRPSPTMKA 869
            D+ SS CPVK+E       N     KY +P+ YNVYSQ+I      DPTNNMPA P+Q+   GQ+ PLST RV S IPKGG ++TW YPSPQMF+N+L+RK K       D  +VV+IHNNMNE TW K+LEWE+L     +G  GAEP LLRFLGRP+D +PKA+ + +LG P PFDRHDWVVDRGG E RYVIDYY+D+   +++  PGL  + +V+SI VDVRPALDS     DRF  MP+ R  G + F P+   PS TMKA
Sbjct:   77 DSDSSKCPVKDEKARSGFVNSMAKQKYTNPNVYNVYSQKI------DPTNNMPAKPDQEMVEGQQIPLSTERVQSNIPKGGTDSTWLYPSPQMFYNSLARKNKLGEMAPEDAGVVVAIHNNMNENTWGKVLEWERLHESEYAGRAGAEPHLLRFLGRPHDLSPKAMFRRLLGFPEPFDRHDWVVDRGGKEVRYVIDYYHDEALSEQDKTPGLTDKDSVKSILVDVRPALDSVESAVDRFFMMPYQRRFGTNSFTPMDYLPSKTMKA 336          
BLAST of mRNA_Ecto-sp13_S_contig12270.1907.1 vs. uniprot
Match: A0A7S1XL53_9STRA (Holocytochrome c-type synthase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XL53_9STRA)

HSP 1 Score: 285 bits (729), Expect = 8.190e-86
Identity = 150/289 (51.90%), Postives = 195/289 (67.47%), Query Frame = 3
Query:    9 AASSSSSCPVKTLLPGSEAGSAAPASSADAPSSSCPVKEENRSKVAKYLHPHKYNVYSQRIGSKDGLDPTNNMPANPNQQPAPGQEKPLSTARVTSTIPKGGEETTWTYPSPQMFWNALSRKGKAENTEEGDMDIVVSIHNNMNELTWKKILEWEKLRSRGGSGVNGAEPRLLRFLGRPNDTAPKALAKMMLGHPLPFDRHDWVVDRGGDERRYVIDYYYDDGAVDEEGMPGLHAEGAVRSIKVDVRPALDSFRDLADRFVQMPFARLTGRSEFVPLSLRPSPTMKARE 875
            AA++  +CPV++       G   P ++A    SSCPVK  +   +AKY + + YNVYSQ+I      DP NNMPANPNQ+PAPGQEK LST RV+S IPKGG ++TWTYPSPQMF+NA+ RKGK  +T E DM++VV+IHNNMNE TW +++ WE +     +   G  PRLLRFLGRP++ +P A  KM+ GHP PFDRHDWVVDRGG E RY+IDYY+D     E+  P L  E +V+SI ++VRPALDS     DR+++MP A L G++ + P +   S  M   E
Sbjct:   18 AAAADGACPVRSKPKDVPKGH--PPAAAGDDESSCPVKNAS-GMLAKYRNTNVYNVYSQKI------DPKNNMPANPNQKPAPGQEKALSTHRVSSNIPKGGTDSTWTYPSPQMFYNAIVRKGKKGSTSEDDMEMVVAIHNNMNERTWNQVMAWEAMHQDADAEEKGTAPRLLRFLGRPDEFSPLARLKMLFGHPAPFDRHDWVVDRGGQEVRYIIDYYHDVSRAHEDEKPALRDESSVKSIVLEVRPALDSPEAFLDRYLRMPLALLQGQTSYQPSNFFASAAMVEAE 297          
BLAST of mRNA_Ecto-sp13_S_contig12270.1907.1 vs. uniprot
Match: A0A7S2RHY1_9STRA (Holocytochrome c-type synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHY1_9STRA)

HSP 1 Score: 270 bits (691), Expect = 4.450e-80
Identity = 149/282 (52.84%), Postives = 190/282 (67.38%), Query Frame = 3
Query:    6 AAASSSSSCPVKTLLPGSEAGSAAPASSADAPSSSCPVKEENRSKVAKYLHPHKYNVYSQRIGSKDGLDPTNNMPANPNQQPAPGQEKPLSTARVTSTIPKGGEET-TWTYPSPQMFWNALSRKGKAENTEEGDMDIVVSIHNNMNELTWKKILEWEKLRSRGGSGVNGAEPRLLRFLGRPNDTAPKA-LAKMMLGHPLPFDRHDWVVDRGGDERRYVIDYYYDDGAVDEEGMPGLHAEGAVRSIKVDVRPALDSFRDLADRFVQMPFARLTGRSEFVPLSL 845
            AAA ++S CPV +  PG+   +   ++  D    SCPV  + R +   Y +P  +NVYSQ       L+P NNMPA P Q  A GQE PL+T RV STIPKGG +  TW YPSPQMFWNA+ RKGK   T E DMD+VV+IHNNMNE TW ++L WE L       + GAEP+LLRF GRP++ +PKA L +++ G P PFDRHDWVVDRGG E RY+IDYY+++  VD++ +PGL  +  +RSI++DVRPALDS   +ADR  +MPFA L GR+ F  L L
Sbjct:   25 AAAPAASECPVHSKAPGASLPTKNASNEQDP---SCPVSHDTRKR---YRNPKMFNVYSQE------LNPDNNMPAKPVQTRAAGQEVPLTTERVKSTIPKGGTDAATWEYPSPQMFWNAIVRKGKKGGTSEQDMDMVVAIHNNMNETTWHQVLAWEALHP-VPEDMEGAEPKLLRFTGRPDENSPKAHLKRLIFGCPEPFDRHDWVVDRGGKEVRYIIDYYHNELGVDQDKVPGLKDQDTIRSIRIDVRPALDSIDAVADRIFRMPFAMLQGRAGFSYLPL 293          
BLAST of mRNA_Ecto-sp13_S_contig12270.1907.1 vs. uniprot
Match: A0A0H5R9A0_9EUKA (Holocytochrome c-type synthase (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R9A0_9EUKA)

HSP 1 Score: 266 bits (680), Expect = 6.160e-79
Identity = 128/214 (59.81%), Postives = 157/214 (73.36%), Query Frame = 3
Query:  144 AKYLHPHKYNVYSQRIGSKDGLDPTNNMPANPNQQPAPGQEKPLSTARVTSTIPKGGEETTWTYPSPQMFWNALSRKGKAENTEEGDMDIVVSIHNNMNELTWKKILEWEKLRSRGGSGVNGAEPRLLRFLGRPNDTAPKALAKMMLGHPLPFDRHDWVVDRGGDERRYVIDYYYDDGAVDEEGMPGLHAEGAVRSIKVDVRPALDSFRDLADR 785
            +KY HPH YNVYS+RI      DP N M ANPNQ+PAPGQ++PLST RVTS+IPKGG + TWTYPSPQMF+NAL+RKGK  +  E D+D VV+IHNNMNE TW+++L+WE  +S          P LLRF+G+PN   PKA  K  LG+  PFDRHDW+VDR G E RYVIDYY+D+  V ++ +PGLH   +++SIKVDVRPALDSF    DR
Sbjct:   69 SKYKHPHVYNVYSERI------DPNNQMSANPNQEPAPGQKEPLSTHRVTSSIPKGGTDGTWTYPSPQMFYNALARKGKVSDVSERDVDTVVAIHNNMNERTWRQLLQWESCKS-------CPNPTLLRFMGKPNHLTPKAWIKSKLGYGTPFDRHDWIVDRCGQEVRYVIDYYHDESGVADDKVPGLHDTSSIKSIKVDVRPALDSFESFVDR 269          
BLAST of mRNA_Ecto-sp13_S_contig12270.1907.1 vs. uniprot
Match: W7TSP8_9STRA (Holocytochrome c-type synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSP8_9STRA)

HSP 1 Score: 259 bits (661), Expect = 1.250e-75
Identity = 175/382 (45.81%), Postives = 214/382 (56.02%), Query Frame = 3
Query:  111 CPVKEENRSKVAKYLHPHK-------------------YNVYSQRIGSKDGLDPTNNMPANPNQQPAPGQEKPLSTARVTSTIPKGGEET-TWTYPSPQMFWNALSRKGKAENTEEGDMDIVVSIHNNMNELTWKKILEWEKLRSRGGSGVNGAE------PRLLRFLGRPNDTAPKALAKMMLGHPLPFDRHDWVVDR-GGDERRYVIDYYYDDGAVDEEGMP-GLHAEGAVRSIKVDVRPALDSFRDLADRFVQMPFARLTGRSEFVPLSLRPSPTMKAREPWAKLRMDEGLPSTPPAPAGAGSATXXXASSATGAPL--STRERDARALKR-VQKKCAKPLGALRAAEGAGDAELAKAAALKLEYCTARYLCKKEALAY 1163
            CPVK  N+S +++   P                     YNVY+Q I      DPTN MPAN N +PAPGQ  PLST RV S IPKGG E  TWTYPSPQMFWNAL RKGKAE   E DMD+VV+IHNNMNE TW+K+LEWE L S     ++ A       PRL RFLGRP++ +PKA  K + GHPLPFDRHDWV+ R  G E RYVIDYY+DD A  E  +P  L    +V+SI VDVRPALDS     DR ++MP   + G + F PL   P      ++P        GL    P     G A     ++  G     S +  +  A+ R V   CA+   A++A     +A  A+AA +KL YC    LCKKEA A+
Sbjct:   33 CPVKSRNKSPISESPLPPPSDSSXXXXXSKAGSEGLTVYNVYAQPI------DPTNQMPANANNKPAPGQITPLSTDRVVSRIPKGGTEAETWTYPSPQMFWNALVRKGKAEGANEEDMDVVVAIHNNMNENTWRKVLEWEALNSSSPLQMDPAHSDEANTPRLSRFLGRPDELSPKAWFKSLFGHPLPFDRHDWVIQRQDGTEVRYVIDYYHDDAAAKENQVPKDLVDANSVKSISVDVRPALDSVHAFVDRGMRMPINLVAGSTHFQPL---PFFWTGGKDPAVG-----GLGRVGP-----GVAPFKHMANVGGVEKEGSNKAMELSAISRQVHDSCAENFAAMQACTD--EASCARAA-VKLSYCMGGLLCKKEAAAF 392          
BLAST of mRNA_Ecto-sp13_S_contig12270.1907.1 vs. uniprot
Match: A0A0G4IUD4_PLABS (Holocytochrome c-type synthase n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IUD4_PLABS)

HSP 1 Score: 254 bits (650), Expect = 3.800e-74
Identity = 130/236 (55.08%), Postives = 161/236 (68.22%), Query Frame = 3
Query:   78 PASSADAPSSSCPVKEENRSKVAKYLHPHKYNVYSQRIGSKDGLDPTNNMPANPNQQPAPGQEKPLSTARVTSTIPKGGEETTWTYPSPQMFWNALSRKGKAENTEEGDMDIVVSIHNNMNELTWKKILEWEKLRSRGGSGVNGAEPRLLRFLGRPNDTAPKALAKMMLGHPLPFDRHDWVVDRGGDERRYVIDYYYDDGAVDEEGMPGLHAEGAVRSIKVDVRPALDSFRDLADR 785
            PA  A AP   CPV   +      Y HPH YNVY++RI      DPTN M ANPNQ+P PGQ +PLST RV S+IPKGG ++TW+YPSPQMF+NAL+RKGK +   E D++ +V+IHNNMNE TW+++L+WE  +S         +P LLRF+GRPN   PKA  K  LG+ LPFDRHDW+VDR G E RYVIDYY+D+  V+ + +P L    +V SIKVD RPALDSF    DR
Sbjct:   82 PAKQASAPDG-CPVAHGSG-----YRHPHVYNVYNERI------DPTNQMAANPNQKPGPGQTQPLSTHRVQSSIPKGGTDSTWSYPSPQMFYNALNRKGKLDGVSETDVNAIVAIHNNMNERTWQQVLQWESCKS-------CPDPTLLRFMGRPNQLTPKAYIKSWLGYGLPFDRHDWIVDRCGQEVRYVIDYYHDEQGVEHDQLPSLRDTTSVASIKVDARPALDSFESCFDR 298          
BLAST of mRNA_Ecto-sp13_S_contig12270.1907.1 vs. uniprot
Match: A0A812PZ14_SYMMI (Holocytochrome c-type synthase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812PZ14_SYMMI)

HSP 1 Score: 252 bits (644), Expect = 5.630e-74
Identity = 137/276 (49.64%), Postives = 174/276 (63.04%), Query Frame = 3
Query:  111 CPVKEENRSKVAKYL---HPHKYNVYSQRIGSKDGLDPTNNMPANPNQQPAPGQEKPLSTARVTSTIPKGGEET-TWTYPSPQMFWNALSRKGKAENTEEGDMDIVVSIHNNMNELTWKKILEWEKLRSRGGSGVNGAEPRLLRFLGRPNDTAPKALAKMMLGHPLPFDRHDWVVDRGGDERRYVIDYYYDDGAVDEEGMPG-LHAEGAVRSIKVDVRPALDSFRDLADRFVQMPFARLTGRSEFVPLSLRPSPTMKAREP---------WAKLRM 896
            CPVK +++          +P+ YNVYSQ+I      +PTN MP  P Q  AP Q + LS  RV+S IPKGG +  TWTYPSPQMFWNAL RKGK E   E DMD VVSIHNNMNE TW++++ WE L    G G    EP+LLRF+G+P+D +PKA  K + GHP PFDRHDW+VDRGG+E RYVIDYY+D+  V  + +P  L    A++SI VDVRPALDS   +  R + MP+A++ G + + P    P   MK+ E          W  +RM
Sbjct:   22 CPVKAKSQQAEXXXXXXKNPNVYNVYSQKI------NPTNQMPDQPMQTAAPSQSQDLSVDRVSSNIPKGGTDADTWTYPSPQMFWNALVRKGKMEGASENDMDTVVSIHNNMNENTWRQVMAWEGLHLVKGPG---REPKLLRFMGKPDDLSPKAYLKTLFGHPAPFDRHDWIVDRGGEEVRYVIDYYHDESKVTHDTVPKQLRDAHAMQSIVVDVRPALDSVGSVVSRLMLMPWAQMRGITHYNPPPFLPPRQMKSAEEARLEELNEMWRSIRM 288          
BLAST of mRNA_Ecto-sp13_S_contig12270.1907.1 vs. uniprot
Match: A0A7S0STW0_9STRA (Holocytochrome c-type synthase (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0STW0_9STRA)

HSP 1 Score: 241 bits (615), Expect = 2.530e-69
Identity = 132/248 (53.23%), Postives = 160/248 (64.52%), Query Frame = 3
Query:  102 SSSCPVKEENRSKVAKYLHPHKYNVYSQRIGSKDGLDPTNNMPANPNQQPAPGQEKPLSTARVTSTIPKGGEET-TWTYPSPQMFWNALSRKGKAENTEEGDMDIVVSIHNNMNELTWKKILEWEKLRSRGGSGVNGAE-PRLLRFLGRPNDTAPKALAKMMLGHPLPFDRHDWVVDRGGDERRYVIDYYYDDGAVDEEGMPG-LHAEGAVRSIKVDVRPALDSFRDLADRFVQMPFARLTGRSEFVP 836
            SS CPVK+ +            YNVY Q+I      DPTNNMP+  NQ  APGQ+ PLST RV S IPKGG +  TW YPSPQMFWNAL RK K E   E  MD VV+IHNNMNE TWK+ILEWE + S    G   ++ P+LL+F GRP++ +PKA  KM+ GH  PFDRHDW+VDR G + RYVIDYY+D+ AV  +  P  L    +++SIKVDVRPALD    L  R V MP  +LT  + + P
Sbjct:   76 SSKCPVKKRDV-----------YNVYGQKI------DPTNNMPSVANQLKAPGQKIPLSTERVPSQIPKGGTDNDTWVYPSPQMFWNALVRKNKVEGAAEEYMDTVVAIHNNMNENTWKQILEWENIYSVKIRGDTSSDLPKLLKFTGRPDELSPKAKIKMLFGHSPPFDRHDWIVDRNGKQIRYVIDYYHDEDAVTSDQKPKTLTDTNSIKSIKVDVRPALDGLEGLISRLVFMPIRQLTSSTSYNP 306          
BLAST of mRNA_Ecto-sp13_S_contig12270.1907.1 vs. uniprot
Match: A0A7S3K0L5_9STRA (Holocytochrome c-type synthase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K0L5_9STRA)

HSP 1 Score: 240 bits (612), Expect = 1.760e-68
Identity = 126/259 (48.65%), Postives = 162/259 (62.55%), Query Frame = 3
Query:   99 PSSSCPVKEENRSKVAKYLHPH---KYNVYSQRIGSKDGLDPTNNMPANPNQQPAPGQEKPLSTARVTSTIPKGGEETTWTYPSPQMFWNALSRKGKAENTEEGDMDIVVSIHNNMNELTWKKILEWEKLRSRGGSGVNGAEPRLLRFLGRPNDTAPKALAKMMLGHPLPFDRHDWVVDRGGDERRYVIDYYYDDGAVDEEGMPGLHAEGAVRSIKVDVRPALDSFRDLADRFVQMPFARLTGRSEFVPLSLRPSPTMK 866
            P+S CPVK  N              +Y+VY +       LDP N MP +  Q PAP Q   LST RV S IPK G + TW YPSPQMFWNAL RKGK+    E DM+ VV++HNNMNEL+W+ +LEWE+LR +  +  N  EPRL RF GRP++ + KA  K+  GHP PFDRHDW+VDRGG ERRY+IDYY D+     + +P L     ++SI++DVRPA DSF  + D  + MP+ R  G+++   L   PS TM+
Sbjct:   42 PTSGCPVKHTNTXXXXXXXXXXXXXQYDVYGR------ALDPRNKMPVSAQQAPAPDQSIELSTERVQSNIPKAGSDDTWQYPSPQMFWNALVRKGKSVGASEQDMETVVAVHNNMNELSWRNVLEWEQLRDKREATAN-FEPRLSRFTGRPDELSLKAQLKVWAGHPPPFDRHDWIVDRGGHERRYIIDYYSDESQASMDEVPNLSDADKIKSIRLDVRPAPDSFAAILDIILWMPYLRYQGKAQPA-LPFFPSATMR 292          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12270.1907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLN0_ECTSI2.840e-27391.84Holocytochrome c-type synthase n=2 Tax=Ectocarpus ... [more]
A0A7S3Y2G6_HETAK5.030e-8655.26Holocytochrome c-type synthase n=1 Tax=Heterosigma... [more]
A0A7S1XL53_9STRA8.190e-8651.90Holocytochrome c-type synthase n=2 Tax=Phaeomonas ... [more]
A0A7S2RHY1_9STRA4.450e-8052.84Holocytochrome c-type synthase n=1 Tax=Rhizochromu... [more]
A0A0H5R9A0_9EUKA6.160e-7959.81Holocytochrome c-type synthase (Fragment) n=1 Tax=... [more]
W7TSP8_9STRA1.250e-7545.81Holocytochrome c-type synthase n=1 Tax=Nannochloro... [more]
A0A0G4IUD4_PLABS3.800e-7455.08Holocytochrome c-type synthase n=1 Tax=Plasmodioph... [more]
A0A812PZ14_SYMMI5.630e-7449.64Holocytochrome c-type synthase n=1 Tax=Symbiodiniu... [more]
A0A7S0STW0_9STRA2.530e-6953.23Holocytochrome c-type synthase (Fragment) n=1 Tax=... [more]
A0A7S3K0L5_9STRA1.760e-6848.65Holocytochrome c-type synthase n=1 Tax=Aureoumbra ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12270contigEcto-sp13_S_contig12270:2..5119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score673.3
Seed ortholog evalue6.5e-191
Seed eggNOG ortholog2880.D7FLN0
Preferred nameHCCS
Model size2080
KEGG rclassRC00727,RC02130
KEGG koko:K01764
KEGG ReactionR02480
KEGG Pathwayko00860,map00860
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004408,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006464,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0009653,GO:0009887,GO:0009987,GO:0016020,GO:0016043,GO:0016829,GO:0016846,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0019538,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0034622,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:1901564
Exons6
EggNOG free text desc.holocytochrome-c synthase activity
EggNOG OGsKOG3996@1,KOG3996@2759
Ec32 ortholog descriptionCytochrome c/c1 haem-lyase
Ec32 orthologEc-17_000530.1
EC4.4.1.17
Cds size1128
COG Functional cat.H
BiGG ReactioniRC1080.CRv4_Au5_s12_g3580_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12270.1907.1prot_Ecto-sp13_S_contig12270.1907.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12270 730..4895 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462652.5930645-UTR-Ecto-sp13_S_contig12270:1..7291681462652.5930645-UTR-Ecto-sp13_S_contig12270:1..729Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12270 2..729 -
1681462652.6750698-UTR-Ecto-sp13_S_contig12270:4895..51191681462652.6750698-UTR-Ecto-sp13_S_contig12270:4895..5119Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12270 4896..5119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462652.6070802-CDS-Ecto-sp13_S_contig12270:729..12091681462652.6070802-CDS-Ecto-sp13_S_contig12270:729..1209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12270 730..1209 -
1681462652.6237073-CDS-Ecto-sp13_S_contig12270:1561..16961681462652.6237073-CDS-Ecto-sp13_S_contig12270:1561..1696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12270 1562..1696 -
1681462652.6339827-CDS-Ecto-sp13_S_contig12270:2500..25961681462652.6339827-CDS-Ecto-sp13_S_contig12270:2500..2596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12270 2501..2596 -
1681462652.6455884-CDS-Ecto-sp13_S_contig12270:3016..31731681462652.6455884-CDS-Ecto-sp13_S_contig12270:3016..3173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12270 3017..3173 -
1681462652.6563132-CDS-Ecto-sp13_S_contig12270:4063..41921681462652.6563132-CDS-Ecto-sp13_S_contig12270:4063..4192Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12270 4064..4192 -
1681462652.6654446-CDS-Ecto-sp13_S_contig12270:4764..48951681462652.6654446-CDS-Ecto-sp13_S_contig12270:4764..4895Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12270 4765..4895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12270.1907.1

>prot_Ecto-sp13_S_contig12270.1907.1 ID=prot_Ecto-sp13_S_contig12270.1907.1|Name=mRNA_Ecto-sp13_S_contig12270.1907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=376bp
MPANPNQQPAPGQEKPLSTARVTSTIPKGGEETTWTYPSPQMFWNALSRK
GKAENTEEGDMDIVVSIHNNMNELTWKKILEWEKLRSRGGSGVNGAEPRL
LRFLGRPNDTAPKALAKMMLGHPLPFDRHDWVVDRGGDERRYVIDYYYDD
GAVDEEGMPGLHAEGAVRSIKVDVRPALDSFRDLADRFVQMPFARLTGRS
EFVPLSLRPSPTMKAREPWAKLRMDEGLPSTPPAPAGAGSATAGSASSAT
GAPLSTRERDARALKRVQKKCAKPLGALRAAEGAGDAELAKAAALKLEYC
TARYLCKKEALAYKEALAYAGSSGSIVGSDTAHAYWAEMALERRLEDMRG
ALSAFTERQMEARRREKEEGGDGEA*
back to top

mRNA from alignment at Ecto-sp13_S_contig12270:2..5119-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12270.1907.1 ID=mRNA_Ecto-sp13_S_contig12270.1907.1|Name=mRNA_Ecto-sp13_S_contig12270.1907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5118bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12270:2..5119- (Ectocarpus species13 EcNAP12_S_4_19m)
CACAAGCGGCAGCGTCGTCTTCATCGTCTTGCCCCGTCAAGACGTTGCTT CCCGGCAGCGAGGCCGGCTCCGCAGCACCAGCATCTTCCGCCGACGCTCC CTCTTCCAGCTGCCCGGTCAAGGAAGAGAACCGATCGAAGGTAGCCAAGT ACCTGCACCCACACAAGTACAACGTGTACAGTCAGAGGATAGGCTCCAAG GATGGTCTCGACCCCACCAACAACATGCCGGCCAACCCCAACCAGCAGCC GGCTCCCGGGCAGGAGAAGCCCCTGTCCACGGCGAGGGTCACGAGCACGA TCCCGAAGGGCGGGGAGGAGACCACGTGGACCTACCCGTCACCGCAGATG TTCTGGTGAGTGGTGGTACACCAAGGCTCTAACGCACTGTACAATGCTAA CACGTGACACGATTGTGTGGGACAATCGGTGTAAACAGCATCTACAACAC AGCAGGCTTCCGTAGTCTACTCCGGTGTACTCTGATCTAAAAGCAGTACT GTCTGACGCATTCCGTCTTGGGTACACCGACAAGGTGGACAGCGCCGCAA CCATCTATCGAGGCAGATAGTAGTGCTCGACAGGCACACGGCCAGACCCT GCTATTGTGCACAGCAGTTAGAGAGGGACCTGACGCCTATTTACTGCATC AGTATCATAAGCCATCGCCGACCCTAAATATGCATATGCGAGCAACGGAC CGGACACAGACATTCTGCATGGCAGCACCAACACTATTTAGAGCAAAAGT CTTTCAGTCAGCCCGACTCTACTGCCCGTGATTCAGAACTGATTGCATCC GCATCGTTTGCTCTGCATTAGGTAGTCTACAGAAGTCACACCGTTCGCGA TTCTCGGTAGTGTATGTGCTGCCTTACCCGATGAAGCCATCGTATCCCGC ATGTTCTTTTGTTGCGCGGGAACGCAGGAACGCTCTGTCGCGCAAGGGGA AGGCCGAAAACACCGAGGAGGGGGACATGGACATCGTTGTTTCGATCCAC AACAACATGAACGAGCTCACCTGGAAAAAGATATTAGAGTGGGAGAAGTT GCGAAGGTATGTAGACTATAAGACTTGTTTTATTTCAGGTCCATTCAAAT CACCTCATGTTTTAGATACTTTATTGGTCTGCTGCTAGGTAGTCTGTCTC CCTTTGTACACGTACGTGTTTTTTAAGACTTCACACATTTTCGAAATTGC GTATAGCAACACGTTGTTTTGCACCGATCTTTTTTTTATTGAGCTTTTAC AAGGGCTTAATCTTACTTATGATTTTCGCGAAGACAACTTGGGTAGTACT CATTCAAGACTGACACCTCTCGCTTGACGTTGTGTTTGGTGTGGGAGGGG GGGGCCACTTGTGTTTTGCATGTCTTAGCGTATAAACCATTGACCACGCG TCCTCGAGAAAACAGAGGATTGTTCCTGCATGTAGGAACGGTCATCGATG GCCAACCATTCCTTCCTGCTTTGCCAAAGGTGGCTCAAGAATGCTTTCCC TGCCTATATCTATCCTATCGATAATGGAAGAGGGAGGTAGGTATTCGCTT CTTCGCGTTGGAGGAGACAGGTAGCGGCGTCTCCGCCTACATGTTTGGCT TCGCAAGGCACTGGTTGGCACCTTGTTGCATTAGACCGAGGTACGAGGGT TGGGATTAACCCAGGGAGCGTCAATCCTTGACACGATAAGCAATGATACA CACATGTCGCAGACGAGCACTAAAGAAGGAGTGGCAACAGTTTATCGCTG CTCCTACAGTACGTTTTTCGAACATGTGTTGTAGGTTATCAACGATTCAT TCCTGATTGACCGGCCGTACAGGAACAAGCTTTTTTCTGCCTTGTCCTCG AGCGCGTTGGTTTGACACACCGCTAACGCTGACCTCGCCTGTCGAACGCA CGTGTGTCTCGCCACTGTCGTTACCTCCACCGGGTGGTGCGCGAAGTCGT GGAGGGAGCGGTGTCAACGGCGCGGAACCCCGCTTGCTGCGGTTCTTGGG CCGCCCTAACGACACGGCCCCGAAGGCGCTGGCGAAGATGATGCTCGGAC ACCCGTTGCCGTTCGACCGTCACGACTGGGTGGTGGACAGGGGAGGGGAT GAGGTACGACGGGGCTCCGCAGGATGCAGACCGGANNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCTCCTCCGTTGCTGCAA ACATCCAAACATCCCGCTCTCAGCGGCGGTACGTGATCGACTACTATTAC GACGACGGTGCTGTGGACGAAGAGGGGATGCCAGGGCTGCACGCGGAAGG GGCGGTGAGGTCGATCAAGGTAAGGTGATGTGTATTCATTCCCTGTGCTT GCGTCTATGCACCATCGAGCCGTGCACATGGCTTCAGAACGGCTCACTTG TCCTTTGTGGCTTTTCTGGTGGCGCTGTGCTGTGCGACTTTCGGTCGACC GTCAAGGAGTGCAGACTATTGCACCGTATGTTGCATGACGAAAGATGGAT CCCCGTGGCCGATTTTCAAAACTCGATTACTCCGCCACGAAGAGGATGCC GAAATCAAAGGATACGTTCTCGGAAAGCTCTCGACGAGACGGTTCCAACG CCCCTATTTTTCTGCTCCGTCGCTGCTCTTCCCGCCTAGTTATCGAGCTT CGAAAGTCGGTACAGGGGGGGGTGATATCCCATGCAACCTACGGTATGTG CGTATTTGCATGTGACCATGTTGTGCGCTCAGAGGTGAATATTTTCAACA CGCCGGCCGCGCAGTGATATTGCCGCGTACGAAGCCAGCAGGAACAGCTC TTTGCAAGAACGAAAGGTTGGATGTATATGTAGACTGGTGGTGCTGCTAC TACCAAAGCTGTAGCGCAGCTTTCCAACATTGGAGTGTAAGACTGCTGTA ACAGGCTTGTAATTTTTTATTTTGGGTTCGTCGGGCTGTTCGAGTCAAGA TCATGTCAGCTGTGAGCATGGGAAACGTAACACCGCAGCTGGCATGAGTT GGTCCTGCTGTTTACAGCCGTTGTCATTGTGCATCACCCCTTGGTGCTCT CCTGAGACTCGCATCCTGATTGTTCGGATCACTTGTACATGACACTCTGG TACTGCGTGTTGGATCGAAACAGGTTGACGTTCGCCCCGCTTTGGACAGC TTCCGAGACTTGGCAGACCGATTCGTGCAGATGCCTTTCGCGCGCCTGAC GGGAAGGAGTGAGTTCGTCCCTCTCAGCTTGCGCCCCTCTCCGACGATGA AGGCCAGGGTGAGTCTCTGAAATAGGTTTGCGCTTTTTGGTGGATGGTGA CGATGGACTTATCAACGTTAGTTGTTGGTGGGGGGGTGCGGGTTTTTGGT GGAGCATCCACGGCAGGTGGAACATCTCCGTAGCTTCCTCTGACGTCATG CGTTACCGAAAAATGCCCCCCGCCCCGTCCCTGATATACAACCCACAACC GAAGTATATATTACACTGCTTCTGGTTACCCCTTGCTCCTGTCCGGCACA AGAGCAGTACTTAAGAATGATTATTTCCGCAGCTTCTTCCGATGTCAGGT GTTGCAATGCCCCCCTCCCCATCCCTGAAATCCGACCATTGTCTCCGCCC CCCCCGGCAGGAGCCGTGGGCAAAGCTTCGAATGGACGAAGGGCTCCCCT CGACGCCCCCCGCTCCTGCCGGTGCGGGCTCAGCAACAGCAGGCAGCGCG AGCTCTGCGACGGGAGCGCCGCTGTCGACCAGAGAACGAGACGCCCGCGC TCTGAAGCGCGTGCAGAAGAAGTGCGCGAAGCCACTGGGCGCCTTGCGGG CGGCGGAAGGCGCCGGAGACGCGGAGCTAGCGAAGGCGGCGGCGCTAAAG CTGGAATACTGCACGGCCCGGTACCTGTGCAAGAAGGAGGCGTTGGCGTA CAAGGAGGCGTTGGCGTACGCCGGGTCCTCGGGGAGCATCGTGGGGAGCG ACACGGCGCACGCGTACTGGGCGGAGATGGCGCTGGAGCGAAGGCTGGAG GACATGCGAGGCGCTCTGTCCGCGTTCACCGAGAGGCAGATGGAGGCGCG GCGAAGAGAAAAGGAGGAAGGCGGAGACGGCGAAGCTTGACGCTTCGCAG AACGGTGGTGGTGCGGAGGAAAACATTGGAGGCGTAAGCAGTGGGTGATG TTGTGGCTGAGAGACGATGGCAGCCAGCGGGGAGCGGTGGGGCGTGACTC TTTGGACTGGATGCTGAGCTCTTCCACATGTGCCCGGGGGGGTAGTAGCG AAATGGATTGCGAGAGAGAGTTGGAAGAGCGTGAGGTCGTGGGCGCGAAG AACGGCGCCACCTTTCCCCTTATGCGCGCTTCTTGTTAGTGGGATAGCAG TTTTACTGCGTCTTGCAGTGCTGCTGAACGTAAGGTGCATCAATGACCCA TATGTTTCACGCAGCATGGCCTGCTACATACACGGTACATTGATGACGCC TCGGTAGGTATCGCGACTTTAAATGAAGCCGGATTCCCCCGGAGACACGG ACCTTGTAGTCGTAGCCAGGACGGGCAGGTTGTGGAGCCTGTAGAGTGCG GGTTACAGAAAGGTGGTCAGTCGGGAATTCCTAGTCGCTCGTCCCTGGCA AAGGAGCAAGCGCGCGATCACGAGGAAAACAACGGGGTAGACTACAATCA CTCCCCCTCCCCAACAAAAAAACATCGACGGTAGACTACTTGCTCTCCCA GGCACTTGAAACGCACGTGAAACTGCACCGCGAAAACATCCACGTCGATA CTACCTACGGCAATTCTTCGGGATACTTTTCTGTCCGGCAGATGCCGCTA TACCCATCCCACATTCGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12270:2..5119-

>mRNA_Ecto-sp13_S_contig12270.1907.1 ID=mRNA_Ecto-sp13_S_contig12270.1907.1|Name=mRNA_Ecto-sp13_S_contig12270.1907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1128bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12270:2..5119- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGCCAACCCCAACCAGCAGCCGGCTCCCGGGCAGGAGAAGCCCCT
GTCCACGGCGAGGGTCACGAGCACGATCCCGAAGGGCGGGGAGGAGACCA
CGTGGACCTACCCGTCACCGCAGATGTTCTGGAACGCTCTGTCGCGCAAG
GGGAAGGCCGAAAACACCGAGGAGGGGGACATGGACATCGTTGTTTCGAT
CCACAACAACATGAACGAGCTCACCTGGAAAAAGATATTAGAGTGGGAGA
AGTTGCGAAGTCGTGGAGGGAGCGGTGTCAACGGCGCGGAACCCCGCTTG
CTGCGGTTCTTGGGCCGCCCTAACGACACGGCCCCGAAGGCGCTGGCGAA
GATGATGCTCGGACACCCGTTGCCGTTCGACCGTCACGACTGGGTGGTGG
ACAGGGGAGGGGATGAGCGGCGGTACGTGATCGACTACTATTACGACGAC
GGTGCTGTGGACGAAGAGGGGATGCCAGGGCTGCACGCGGAAGGGGCGGT
GAGGTCGATCAAGGTTGACGTTCGCCCCGCTTTGGACAGCTTCCGAGACT
TGGCAGACCGATTCGTGCAGATGCCTTTCGCGCGCCTGACGGGAAGGAGT
GAGTTCGTCCCTCTCAGCTTGCGCCCCTCTCCGACGATGAAGGCCAGGGA
GCCGTGGGCAAAGCTTCGAATGGACGAAGGGCTCCCCTCGACGCCCCCCG
CTCCTGCCGGTGCGGGCTCAGCAACAGCAGGCAGCGCGAGCTCTGCGACG
GGAGCGCCGCTGTCGACCAGAGAACGAGACGCCCGCGCTCTGAAGCGCGT
GCAGAAGAAGTGCGCGAAGCCACTGGGCGCCTTGCGGGCGGCGGAAGGCG
CCGGAGACGCGGAGCTAGCGAAGGCGGCGGCGCTAAAGCTGGAATACTGC
ACGGCCCGGTACCTGTGCAAGAAGGAGGCGTTGGCGTACAAGGAGGCGTT
GGCGTACGCCGGGTCCTCGGGGAGCATCGTGGGGAGCGACACGGCGCACG
CGTACTGGGCGGAGATGGCGCTGGAGCGAAGGCTGGAGGACATGCGAGGC
GCTCTGTCCGCGTTCACCGAGAGGCAGATGGAGGCGCGGCGAAGAGAAAA
GGAGGAAGGCGGAGACGGCGAAGCTTGA
back to top