mRNA_Ecto-sp13_S_contig78177.19070.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78177.19070.1
Unique NamemRNA_Ecto-sp13_S_contig78177.19070.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78177.19070.1 vs. uniprot
Match: A0A2A4Z475_9PROT (Autotransporter domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2A4Z475_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 2.020e-6
Identity = 59/159 (37.11%), Postives = 87/159 (54.72%), Query Frame = 1 
Query:   46 DADVTAWNIGVS----PASTGQVAFTGDG-VDLSNDSVNFLVSGSLAGVA---TLEDVFAGNMAAITTGATVTDNSFLYDFSLVDDTNNVDVAVTVANTIADTVENPGFAEAGEILLTGALSGSSDPEIILLQSAIGSQSTQEGASKAIEAVTSPNIDG 498
            DAD  A+ +GV       S+ Q+  +  G VD SNDS+   + GSL+      T+  V  GN  A T     +DNS++YDF L  + +NVD+ VTV NTI D + +     A    L   L+GS    I  +QS +G+ ST+E  ++A+E+V  P++DG
Sbjct:  245 DADSAAYTLGVKRTAGSTSSAQITISSGGPVDFSNDSLTIDI-GSLSQALVNETISSVIIGNGGA-TVIPNFSDNSYMYDFVLQQNGDNVDLIVTV-NTI-DELASSSSNRAVVRFLFDDLAGSEVAAINQIQSILGNISTREAFNEALESVL-PDLDG 398
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78177.19070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2A4Z475_9PROT2.020e-637.11Autotransporter domain-containing protein n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78177contigEcto-sp13_S_contig78177:3..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size498
Hectar predicted targeting categoryother localisation
Exons1
Cds size498
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464052.377436-CDS-Ecto-sp13_S_contig78177:2..5001681464052.377436-CDS-Ecto-sp13_S_contig78177:2..500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78177 3..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78177.19070.1prot_Ecto-sp13_S_contig78177.19070.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78177 3..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78177.19070.1

>prot_Ecto-sp13_S_contig78177.19070.1 ID=prot_Ecto-sp13_S_contig78177.19070.1|Name=mRNA_Ecto-sp13_S_contig78177.19070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
VTLGDDVTVTAATQTDADVTAWNIGVSPASTGQVAFTGDGVDLSNDSVNF
LVSGSLAGVATLEDVFAGNMAAITTGATVTDNSFLYDFSLVDDTNNVDVA
VTVANTIADTVENPGFAEAGEILLTGALSGSSDPEIILLQSAIGSQSTQE
GASKAIEAVTSPNIDG
back to top

mRNA from alignment at Ecto-sp13_S_contig78177:3..500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78177.19070.1 ID=mRNA_Ecto-sp13_S_contig78177.19070.1|Name=mRNA_Ecto-sp13_S_contig78177.19070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78177:3..500- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCACGCTTGGCGACGACGTGACCGTGACTGCGGCGACACAGACCGATGC
GGACGTAACAGCCTGGAACATCGGTGTCAGCCCGGCATCCACCGGTCAGG
TGGCCTTTACGGGCGACGGCGTCGATCTGTCCAATGACAGTGTGAACTTC
CTGGTGAGCGGCTCCCTGGCCGGGGTGGCGACCCTGGAAGACGTCTTTGC
CGGGAACATGGCGGCGATTACCACCGGCGCGACGGTGACGGATAACTCTT
TTCTTTATGACTTCAGCCTCGTCGACGACACCAACAATGTCGACGTGGCC
GTCACCGTGGCAAACACCATCGCCGATACGGTGGAGAATCCAGGCTTTGC
CGAAGCCGGCGAGATCCTGTTGACCGGCGCCTTGTCCGGCTCGAGCGACC
CGGAAATCATCCTGCTTCAGTCCGCCATCGGGTCGCAGTCCACCCAGGAA
GGGGCCAGCAAGGCGATCGAGGCGGTGACCTCGCCCAACATCGACGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78177:3..500-

>mRNA_Ecto-sp13_S_contig78177.19070.1 ID=mRNA_Ecto-sp13_S_contig78177.19070.1|Name=mRNA_Ecto-sp13_S_contig78177.19070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78177:3..500- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCACGCTTGGCGACGACGTGACCGTGACTGCGGCGACACAGACCGATGC
GGACGTAACAGCCTGGAACATCGGTGTCAGCCCGGCATCCACCGGTCAGG
TGGCCTTTACGGGCGACGGCGTCGATCTGTCCAATGACAGTGTGAACTTC
CTGGTGAGCGGCTCCCTGGCCGGGGTGGCGACCCTGGAAGACGTCTTTGC
CGGGAACATGGCGGCGATTACCACCGGCGCGACGGTGACGGATAACTCTT
TTCTTTATGACTTCAGCCTCGTCGACGACACCAACAATGTCGACGTGGCC
GTCACCGTGGCAAACACCATCGCCGATACGGTGGAGAATCCAGGCTTTGC
CGAAGCCGGCGAGATCCTGTTGACCGGCGCCTTGTCCGGCTCGAGCGACC
CGGAAATCATCCTGCTTCAGTCCGCCATCGGGTCGCAGTCCACCCAGGAA
GGGGCCAGCAAGGCGATCGAGGCGGTGACCTCGCCCAACATCGACGGC
back to top